data_8F3L # _model_server_result.job_id Med7MHLVMhWsYhdgrC_7EQ _model_server_result.datetime_utc '2024-11-26 07:39:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f3l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 8F3L # _exptl.entry_id 8F3L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 336.406 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'OPEN FORM - PENICILLIN G' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation T485A _entity.pdbx_fragment ? _entity.pdbx_ec 3.4.16.4 # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8F3L _cell.length_a 193.182 _cell.length_b 193.182 _cell.length_c 156.401 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F3L _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 389 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 422 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C7 _struct_conn.ptnr2_label_comp_id PNM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PNM _struct_conn.ptnr2_auth_seq_id 701 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.357 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H20 N2 O4 S' _chem_comp.formula_weight 336.406 _chem_comp.id PNM _chem_comp.mon_nstd_flag . _chem_comp.name 'OPEN FORM - PENICILLIN G' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O8 C7 PNM doub 247 n n C7 C6 PNM sing 248 n n C7 HC7 PNM sing 249 n n N4 C3 PNM sing 250 n n N4 C5 PNM sing 251 n n N4 H4 PNM sing 252 n n C3 C11 PNM sing 253 n n C3 C2 PNM sing 254 n n C3 HC3 PNM sing 255 n n C11 O13 PNM sing 256 n n C11 O12 PNM doub 257 n n O13 HXT PNM sing 258 n n C2 C10 PNM sing 259 n n C2 C9 PNM sing 260 n n C2 S1 PNM sing 261 n n C10 H101 PNM sing 262 n n C10 H102 PNM sing 263 n n C10 H103 PNM sing 264 n n C9 HC91 PNM sing 265 n n C9 HC92 PNM sing 266 n n C9 HC93 PNM sing 267 n n S1 C5 PNM sing 268 n n C5 C6 PNM sing 269 n n C5 HC5 PNM sing 270 n n C6 N14 PNM sing 271 n n C6 HC6 PNM sing 272 n n N14 C15 PNM sing 273 n n N14 H14 PNM sing 274 n n C15 O16 PNM doub 275 n n C15 C17 PNM sing 276 n n C17 C18 PNM sing 277 n n C17 H171 PNM sing 278 n n C17 H172 PNM sing 279 n n C18 C19 PNM doub 280 n y C18 C23 PNM sing 281 n y C19 C20 PNM sing 282 n y C19 H19 PNM sing 283 n n C20 C21 PNM doub 284 n y C20 H20 PNM sing 285 n n C21 C22 PNM sing 286 n y C21 H21 PNM sing 287 n n C22 C23 PNM doub 288 n y C22 H22 PNM sing 289 n n C23 H23 PNM sing 290 n n # _atom_sites.entry_id 8F3L _atom_sites.fract_transf_matrix[1][1] 0.005176 _atom_sites.fract_transf_matrix[1][2] 0.002989 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PNM A 1 701 422 PNM SER . C 3 SO4 A 1 702 1 SO4 SO4 . D 3 SO4 A 1 703 2 SO4 SO4 . E 3 SO4 A 1 704 3 SO4 SO4 . F 3 SO4 A 1 705 4 SO4 SO4 . G 3 SO4 A 1 706 5 SO4 SO4 . H 3 SO4 A 1 707 6 SO4 SO4 . I 3 SO4 A 1 708 7 SO4 SO4 . J 3 SO4 A 1 709 8 SO4 SO4 . K 4 HOH A 1 801 43 HOH HOH . K 4 HOH A 2 802 46 HOH HOH . K 4 HOH A 3 803 7 HOH HOH . K 4 HOH A 4 804 49 HOH HOH . K 4 HOH A 5 805 11 HOH HOH . K 4 HOH A 6 806 19 HOH HOH . K 4 HOH A 7 807 45 HOH HOH . K 4 HOH A 8 808 10 HOH HOH . K 4 HOH A 9 809 9 HOH HOH . K 4 HOH A 10 810 56 HOH HOH . K 4 HOH A 11 811 28 HOH HOH . K 4 HOH A 12 812 17 HOH HOH . K 4 HOH A 13 813 39 HOH HOH . K 4 HOH A 14 814 40 HOH HOH . K 4 HOH A 15 815 50 HOH HOH . K 4 HOH A 16 816 57 HOH HOH . K 4 HOH A 17 817 44 HOH HOH . K 4 HOH A 18 818 38 HOH HOH . K 4 HOH A 19 819 47 HOH HOH . K 4 HOH A 20 820 48 HOH HOH . K 4 HOH A 21 821 54 HOH HOH . K 4 HOH A 22 822 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O8 PNM . . . B 2 9.747 -87.369 -45.313 1 104.05 ? O8 PNM 701 A 1 HETATM 2 C C7 PNM . . . B 2 9.715 -87.287 -46.536 1 99.12 ? C7 PNM 701 A 1 HETATM 3 N N4 PNM . . . B 2 7.86 -85.452 -46.518 1 113.68 ? N4 PNM 701 A 1 HETATM 4 C C3 PNM . . . B 2 6.917 -85.422 -45.391 1 106.66 ? C3 PNM 701 A 1 HETATM 5 C C11 PNM . . . B 2 6.971 -84.036 -44.812 1 122.08 ? C11 PNM 701 A 1 HETATM 6 O O13 PNM . . . B 2 6.691 -83.932 -43.582 1 121.78 ? O13 PNM 701 A 1 HETATM 7 O O12 PNM . . . B 2 7.305 -83.133 -45.633 1 130.41 ? O12 PNM 701 A 1 HETATM 8 C C2 PNM . . . B 2 5.506 -85.871 -45.837 1 86.66 ? C2 PNM 701 A 1 HETATM 9 C C10 PNM . . . B 2 4.683 -86.573 -44.754 1 120.56 ? C10 PNM 701 A 1 HETATM 10 C C9 PNM . . . B 2 4.702 -84.74 -46.477 1 130.04 ? C9 PNM 701 A 1 HETATM 11 S S1 PNM . . . B 2 5.847 -87.182 -47.058 1 111.6 ? S1 PNM 701 A 1 HETATM 12 C C5 PNM . . . B 2 7.512 -86.551 -47.431 1 112.13 ? C5 PNM 701 A 1 HETATM 13 C C6 PNM . . . B 2 8.524 -87.691 -47.384 1 106.73 ? C6 PNM 701 A 1 HETATM 14 N N14 PNM . . . B 2 7.906 -88.941 -47.005 1 109.79 ? N14 PNM 701 A 1 HETATM 15 C C15 PNM . . . B 2 8.586 -90.073 -46.556 1 120.46 ? C15 PNM 701 A 1 HETATM 16 O O16 PNM . . . B 2 9.804 -90.176 -46.396 1 130.59 ? O16 PNM 701 A 1 HETATM 17 C C17 PNM . . . B 2 7.609 -91.195 -46.271 1 116.54 ? C17 PNM 701 A 1 HETATM 18 C C18 PNM . . . B 2 6.759 -90.973 -45.051 1 140.34 ? C18 PNM 701 A 1 HETATM 19 C C19 PNM . . . B 2 5.496 -90.407 -45.19 1 151.75 ? C19 PNM 701 A 1 HETATM 20 C C20 PNM . . . B 2 4.712 -90.203 -44.055 1 122.89 ? C20 PNM 701 A 1 HETATM 21 C C21 PNM . . . B 2 5.208 -90.566 -42.804 1 131.51 ? C21 PNM 701 A 1 HETATM 22 C C22 PNM . . . B 2 6.477 -91.131 -42.675 1 147.39 ? C22 PNM 701 A 1 HETATM 23 C C23 PNM . . . B 2 7.26 -91.337 -43.809 1 136.5 ? C23 PNM 701 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #