data_8F3T # _model_server_result.job_id u-_rX0tTrjq_UmB8lH5OWQ _model_server_result.datetime_utc '2024-10-20 20:51:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f3t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":720}' # _entry.id 8F3T # _exptl.entry_id 8F3T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8F3T _cell.length_a 192.777 _cell.length_b 192.777 _cell.length_c 155.427 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F3T _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 U N N ? 3 V N N ? 3 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 447 A SER 480 1_555 W NA NA . A NA 722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.032 ? metalc ? metalc2 A OE2 GLU 491 A GLU 524 1_555 V NA NA . A NA 721 12_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.9 ? metalc ? metalc3 A OE1 GLU 509 A GLU 542 1_555 U NA NA . A NA 720 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? metalc ? metalc4 A OE2 GLU 509 A GLU 542 1_555 U NA NA . A NA 720 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.17 ? metalc ? metalc5 A OG1 THR 585 A THR 618 1_555 W NA NA . A NA 722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc6 U NA NA . A NA 720 1_555 X O HOH . A HOH 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.054 ? metalc ? metalc7 U NA NA . A NA 720 1_555 X O HOH . A HOH 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc8 U NA NA . A NA 720 1_555 X O HOH . A HOH 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc9 U NA NA . A NA 720 1_555 X O HOH . A HOH 1047 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc10 V NA NA . A NA 721 1_555 X O HOH . A HOH 973 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc11 V NA NA . A NA 721 1_555 X O HOH . A HOH 987 12_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc12 W NA NA . A NA 722 1_555 X O HOH . A HOH 875 11_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8F3T _atom_sites.fract_transf_matrix[1][1] 0.005187 _atom_sites.fract_transf_matrix[1][2] 0.002995 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00599 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 701 1 SO4 SO4 . C 2 SO4 A 1 702 2 SO4 SO4 . D 2 SO4 A 1 703 3 SO4 SO4 . E 2 SO4 A 1 704 4 SO4 SO4 . F 2 SO4 A 1 705 5 SO4 SO4 . G 2 SO4 A 1 706 6 SO4 SO4 . H 2 SO4 A 1 707 7 SO4 SO4 . I 2 SO4 A 1 708 8 SO4 SO4 . J 2 SO4 A 1 709 9 SO4 SO4 . K 2 SO4 A 1 710 10 SO4 SO4 . L 2 SO4 A 1 711 11 SO4 SO4 . M 2 SO4 A 1 712 12 SO4 SO4 . N 2 SO4 A 1 713 13 SO4 SO4 . O 2 SO4 A 1 714 14 SO4 SO4 . P 2 SO4 A 1 715 15 SO4 SO4 . Q 2 SO4 A 1 716 16 SO4 SO4 . R 2 SO4 A 1 717 18 SO4 SO4 . S 2 SO4 A 1 718 35 SO4 SO4 . T 2 SO4 A 1 719 37 SO4 SO4 . U 3 NA A 1 720 1 NA NA . V 3 NA A 1 721 2 NA NA . W 3 NA A 1 722 3 NA NA . X 4 HOH A 1 801 299 HOH HOH . X 4 HOH A 2 802 209 HOH HOH . X 4 HOH A 3 803 327 HOH HOH . X 4 HOH A 4 804 326 HOH HOH . X 4 HOH A 5 805 127 HOH HOH . X 4 HOH A 6 806 300 HOH HOH . X 4 HOH A 7 807 191 HOH HOH . X 4 HOH A 8 808 206 HOH HOH . X 4 HOH A 9 809 63 HOH HOH . X 4 HOH A 10 810 340 HOH HOH . X 4 HOH A 11 811 323 HOH HOH . X 4 HOH A 12 812 66 HOH HOH . X 4 HOH A 13 813 239 HOH HOH . X 4 HOH A 14 814 29 HOH HOH . X 4 HOH A 15 815 110 HOH HOH . X 4 HOH A 16 816 18 HOH HOH . X 4 HOH A 17 817 132 HOH HOH . X 4 HOH A 18 818 54 HOH HOH . X 4 HOH A 19 819 14 HOH HOH . X 4 HOH A 20 820 322 HOH HOH . X 4 HOH A 21 821 91 HOH HOH . X 4 HOH A 22 822 20 HOH HOH . X 4 HOH A 23 823 40 HOH HOH . X 4 HOH A 24 824 12 HOH HOH . X 4 HOH A 25 825 37 HOH HOH . X 4 HOH A 26 826 121 HOH HOH . X 4 HOH A 27 827 70 HOH HOH . X 4 HOH A 28 828 45 HOH HOH . X 4 HOH A 29 829 44 HOH HOH . X 4 HOH A 30 830 301 HOH HOH . X 4 HOH A 31 831 144 HOH HOH . X 4 HOH A 32 832 9 HOH HOH . X 4 HOH A 33 833 72 HOH HOH . X 4 HOH A 34 834 36 HOH HOH . X 4 HOH A 35 835 105 HOH HOH . X 4 HOH A 36 836 21 HOH HOH . X 4 HOH A 37 837 32 HOH HOH . X 4 HOH A 38 838 26 HOH HOH . X 4 HOH A 39 839 11 HOH HOH . X 4 HOH A 40 840 19 HOH HOH . X 4 HOH A 41 841 331 HOH HOH . X 4 HOH A 42 842 51 HOH HOH . X 4 HOH A 43 843 25 HOH HOH . X 4 HOH A 44 844 226 HOH HOH . X 4 HOH A 45 845 13 HOH HOH . X 4 HOH A 46 846 208 HOH HOH . X 4 HOH A 47 847 17 HOH HOH . X 4 HOH A 48 848 27 HOH HOH . X 4 HOH A 49 849 109 HOH HOH . X 4 HOH A 50 850 128 HOH HOH . X 4 HOH A 51 851 274 HOH HOH . X 4 HOH A 52 852 28 HOH HOH . X 4 HOH A 53 853 114 HOH HOH . X 4 HOH A 54 854 218 HOH HOH . X 4 HOH A 55 855 101 HOH HOH . X 4 HOH A 56 856 332 HOH HOH . X 4 HOH A 57 857 106 HOH HOH . X 4 HOH A 58 858 1 HOH HOH . X 4 HOH A 59 859 116 HOH HOH . X 4 HOH A 60 860 35 HOH HOH . X 4 HOH A 61 861 23 HOH HOH . X 4 HOH A 62 862 4 HOH HOH . X 4 HOH A 63 863 60 HOH HOH . X 4 HOH A 64 864 46 HOH HOH . X 4 HOH A 65 865 201 HOH HOH . X 4 HOH A 66 866 67 HOH HOH . X 4 HOH A 67 867 7 HOH HOH . X 4 HOH A 68 868 64 HOH HOH . X 4 HOH A 69 869 84 HOH HOH . X 4 HOH A 70 870 62 HOH HOH . X 4 HOH A 71 871 33 HOH HOH . X 4 HOH A 72 872 47 HOH HOH . X 4 HOH A 73 873 6 HOH HOH . X 4 HOH A 74 874 2 HOH HOH . X 4 HOH A 75 875 265 HOH HOH . X 4 HOH A 76 876 240 HOH HOH . X 4 HOH A 77 877 52 HOH HOH . X 4 HOH A 78 878 136 HOH HOH . X 4 HOH A 79 879 43 HOH HOH . X 4 HOH A 80 880 123 HOH HOH . X 4 HOH A 81 881 76 HOH HOH . X 4 HOH A 82 882 272 HOH HOH . X 4 HOH A 83 883 48 HOH HOH . X 4 HOH A 84 884 311 HOH HOH . X 4 HOH A 85 885 75 HOH HOH . X 4 HOH A 86 886 169 HOH HOH . X 4 HOH A 87 887 8 HOH HOH . X 4 HOH A 88 888 10 HOH HOH . X 4 HOH A 89 889 3 HOH HOH . X 4 HOH A 90 890 55 HOH HOH . X 4 HOH A 91 891 167 HOH HOH . X 4 HOH A 92 892 107 HOH HOH . X 4 HOH A 93 893 58 HOH HOH . X 4 HOH A 94 894 94 HOH HOH . X 4 HOH A 95 895 88 HOH HOH . X 4 HOH A 96 896 81 HOH HOH . X 4 HOH A 97 897 34 HOH HOH . X 4 HOH A 98 898 92 HOH HOH . X 4 HOH A 99 899 5 HOH HOH . X 4 HOH A 100 900 103 HOH HOH . X 4 HOH A 101 901 131 HOH HOH . X 4 HOH A 102 902 42 HOH HOH . X 4 HOH A 103 903 39 HOH HOH . X 4 HOH A 104 904 266 HOH HOH . X 4 HOH A 105 905 135 HOH HOH . X 4 HOH A 106 906 65 HOH HOH . X 4 HOH A 107 907 181 HOH HOH . X 4 HOH A 108 908 89 HOH HOH . X 4 HOH A 109 909 86 HOH HOH . X 4 HOH A 110 910 175 HOH HOH . X 4 HOH A 111 911 74 HOH HOH . X 4 HOH A 112 912 211 HOH HOH . X 4 HOH A 113 913 24 HOH HOH . X 4 HOH A 114 914 49 HOH HOH . X 4 HOH A 115 915 104 HOH HOH . X 4 HOH A 116 916 155 HOH HOH . X 4 HOH A 117 917 61 HOH HOH . X 4 HOH A 118 918 15 HOH HOH . X 4 HOH A 119 919 118 HOH HOH . X 4 HOH A 120 920 87 HOH HOH . X 4 HOH A 121 921 329 HOH HOH . X 4 HOH A 122 922 53 HOH HOH . X 4 HOH A 123 923 22 HOH HOH . X 4 HOH A 124 924 202 HOH HOH . X 4 HOH A 125 925 56 HOH HOH . X 4 HOH A 126 926 30 HOH HOH . X 4 HOH A 127 927 111 HOH HOH . X 4 HOH A 128 928 119 HOH HOH . X 4 HOH A 129 929 99 HOH HOH . X 4 HOH A 130 930 318 HOH HOH . X 4 HOH A 131 931 148 HOH HOH . X 4 HOH A 132 932 124 HOH HOH . X 4 HOH A 133 933 342 HOH HOH . X 4 HOH A 134 934 31 HOH HOH . X 4 HOH A 135 935 50 HOH HOH . X 4 HOH A 136 936 149 HOH HOH . X 4 HOH A 137 937 97 HOH HOH . X 4 HOH A 138 938 38 HOH HOH . X 4 HOH A 139 939 108 HOH HOH . X 4 HOH A 140 940 305 HOH HOH . X 4 HOH A 141 941 16 HOH HOH . X 4 HOH A 142 942 142 HOH HOH . X 4 HOH A 143 943 165 HOH HOH . X 4 HOH A 144 944 160 HOH HOH . X 4 HOH A 145 945 98 HOH HOH . X 4 HOH A 146 946 102 HOH HOH . X 4 HOH A 147 947 190 HOH HOH . X 4 HOH A 148 948 321 HOH HOH . X 4 HOH A 149 949 140 HOH HOH . X 4 HOH A 150 950 141 HOH HOH . X 4 HOH A 151 951 307 HOH HOH . X 4 HOH A 152 952 164 HOH HOH . X 4 HOH A 153 953 122 HOH HOH . X 4 HOH A 154 954 41 HOH HOH . X 4 HOH A 155 955 152 HOH HOH . X 4 HOH A 156 956 173 HOH HOH . X 4 HOH A 157 957 96 HOH HOH . X 4 HOH A 158 958 333 HOH HOH . X 4 HOH A 159 959 352 HOH HOH . X 4 HOH A 160 960 290 HOH HOH . X 4 HOH A 161 961 268 HOH HOH . X 4 HOH A 162 962 284 HOH HOH . X 4 HOH A 163 963 69 HOH HOH . X 4 HOH A 164 964 57 HOH HOH . X 4 HOH A 165 965 276 HOH HOH . X 4 HOH A 166 966 163 HOH HOH . X 4 HOH A 167 967 194 HOH HOH . X 4 HOH A 168 968 77 HOH HOH . X 4 HOH A 169 969 317 HOH HOH . X 4 HOH A 170 970 79 HOH HOH . X 4 HOH A 171 971 225 HOH HOH . X 4 HOH A 172 972 224 HOH HOH . X 4 HOH A 173 973 172 HOH HOH . X 4 HOH A 174 974 330 HOH HOH . X 4 HOH A 175 975 282 HOH HOH . X 4 HOH A 176 976 196 HOH HOH . X 4 HOH A 177 977 220 HOH HOH . X 4 HOH A 178 978 341 HOH HOH . X 4 HOH A 179 979 68 HOH HOH . X 4 HOH A 180 980 183 HOH HOH . X 4 HOH A 181 981 320 HOH HOH . X 4 HOH A 182 982 253 HOH HOH . X 4 HOH A 183 983 80 HOH HOH . X 4 HOH A 184 984 312 HOH HOH . X 4 HOH A 185 985 281 HOH HOH . X 4 HOH A 186 986 293 HOH HOH . X 4 HOH A 187 987 267 HOH HOH . X 4 HOH A 188 988 174 HOH HOH . X 4 HOH A 189 989 90 HOH HOH . X 4 HOH A 190 990 335 HOH HOH . X 4 HOH A 191 991 221 HOH HOH . X 4 HOH A 192 992 216 HOH HOH . X 4 HOH A 193 993 347 HOH HOH . X 4 HOH A 194 994 346 HOH HOH . X 4 HOH A 195 995 205 HOH HOH . X 4 HOH A 196 996 204 HOH HOH . X 4 HOH A 197 997 129 HOH HOH . X 4 HOH A 198 998 198 HOH HOH . X 4 HOH A 199 999 179 HOH HOH . X 4 HOH A 200 1000 310 HOH HOH . X 4 HOH A 201 1001 344 HOH HOH . X 4 HOH A 202 1002 159 HOH HOH . X 4 HOH A 203 1003 328 HOH HOH . X 4 HOH A 204 1004 315 HOH HOH . X 4 HOH A 205 1005 338 HOH HOH . X 4 HOH A 206 1006 336 HOH HOH . X 4 HOH A 207 1007 292 HOH HOH . X 4 HOH A 208 1008 309 HOH HOH . X 4 HOH A 209 1009 264 HOH HOH . X 4 HOH A 210 1010 246 HOH HOH . X 4 HOH A 211 1011 150 HOH HOH . X 4 HOH A 212 1012 319 HOH HOH . X 4 HOH A 213 1013 275 HOH HOH . X 4 HOH A 214 1014 343 HOH HOH . X 4 HOH A 215 1015 337 HOH HOH . X 4 HOH A 216 1016 186 HOH HOH . X 4 HOH A 217 1017 334 HOH HOH . X 4 HOH A 218 1018 295 HOH HOH . X 4 HOH A 219 1019 249 HOH HOH . X 4 HOH A 220 1020 306 HOH HOH . X 4 HOH A 221 1021 139 HOH HOH . X 4 HOH A 222 1022 308 HOH HOH . X 4 HOH A 223 1023 353 HOH HOH . X 4 HOH A 224 1024 302 HOH HOH . X 4 HOH A 225 1025 134 HOH HOH . X 4 HOH A 226 1026 351 HOH HOH . X 4 HOH A 227 1027 313 HOH HOH . X 4 HOH A 228 1028 197 HOH HOH . X 4 HOH A 229 1029 193 HOH HOH . X 4 HOH A 230 1030 348 HOH HOH . X 4 HOH A 231 1031 349 HOH HOH . X 4 HOH A 232 1032 113 HOH HOH . X 4 HOH A 233 1033 339 HOH HOH . X 4 HOH A 234 1034 303 HOH HOH . X 4 HOH A 235 1035 115 HOH HOH . X 4 HOH A 236 1036 298 HOH HOH . X 4 HOH A 237 1037 177 HOH HOH . X 4 HOH A 238 1038 350 HOH HOH . X 4 HOH A 239 1039 189 HOH HOH . X 4 HOH A 240 1040 157 HOH HOH . X 4 HOH A 241 1041 192 HOH HOH . X 4 HOH A 242 1042 162 HOH HOH . X 4 HOH A 243 1043 259 HOH HOH . X 4 HOH A 244 1044 241 HOH HOH . X 4 HOH A 245 1045 304 HOH HOH . X 4 HOH A 246 1046 263 HOH HOH . X 4 HOH A 247 1047 130 HOH HOH . X 4 HOH A 248 1048 117 HOH HOH . X 4 HOH A 249 1049 345 HOH HOH . X 4 HOH A 250 1050 153 HOH HOH . X 4 HOH A 251 1051 146 HOH HOH . X 4 HOH A 252 1052 233 HOH HOH . X 4 HOH A 253 1053 188 HOH HOH . X 4 HOH A 254 1054 325 HOH HOH . X 4 HOH A 255 1055 324 HOH HOH . X 4 HOH A 256 1056 262 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id U _atom_site.label_entity_id 3 _atom_site.Cartn_x 26.585 _atom_site.Cartn_y -99.457 _atom_site.Cartn_z -46.696 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 66.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 720 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #