data_8F42 # _model_server_result.job_id 2XkkRxF-brjbxndXX8pSeQ _model_server_result.datetime_utc '2024-11-14 23:27:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f42 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 8F42 # _exptl.entry_id 8F42 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 452.551 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8F42 _cell.length_a 35.363 _cell.length_b 35.363 _cell.length_c 103.291 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F42 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall 'P 4cw' _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N3 DC 3 A DC 3 1_555 B N1 DG 8 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 3 A DC 3 1_555 B O6 DG 8 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 3 A DC 3 1_555 B N2 DG 8 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DT 4 A DT 4 1_555 B N1 DA 7 B DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O4 DT 4 A DT 4 1_555 B N6 DA 7 B DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DT 5 A DT 5 1_555 B N1 DA 6 B DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O4 DT 5 A DT 5 1_555 B N6 DA 6 B DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N1 DA 6 A DA 6 1_555 B N3 DT 5 B DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N6 DA 6 A DA 6 1_555 B O4 DT 5 B DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DA 7 A DA 7 1_555 B N3 DT 4 B DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N6 DA 7 A DA 7 1_555 B O4 DT 4 B DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 DG 8 A DG 8 1_555 B N3 DC 3 B DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N2 DG 8 A DG 8 1_555 B O2 DC 3 B DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O6 DG 8 A DG 8 1_555 B N4 DC 3 B DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DG 9 A DG 9 1_555 B N3 DC 14 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N2 DG 9 A DG 9 1_555 B O2 DC 14 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O6 DG 9 A DG 9 1_555 B N4 DC 14 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 DA 10 A DA 10 1_555 B N3 DT 13 B DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N6 DA 10 A DA 10 1_555 B O4 DT 13 B DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 DA 11 A DA 11 1_555 B N3 DT 12 B DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N6 DA 11 A DA 11 1_555 B O4 DT 12 B DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 DT 12 A DT 12 1_555 B N1 DA 11 B DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O4 DT 12 A DT 12 1_555 B N6 DA 11 B DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N3 DT 13 A DT 13 1_555 B N1 DA 10 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O4 DT 13 A DT 13 1_555 B N6 DA 10 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N3 DC 14 A DC 14 1_555 B N1 DG 9 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N4 DC 14 A DC 14 1_555 B O6 DG 9 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A O2 DC 14 A DC 14 1_555 B N2 DG 9 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C27 H28 N6 O' _chem_comp.formula_weight 452.551 _chem_comp.id HT1 _chem_comp.mon_nstd_flag . _chem_comp.name "2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'HOECHST 33342' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 HT1 sing 150 n n C1 C2 HT1 doub 151 n y C1 C6 HT1 sing 152 n y O1 C26 HT1 sing 153 n n C2 C3 HT1 sing 154 n y C2 H2 HT1 sing 155 n n C3 C4 HT1 doub 156 n y C3 H3 HT1 sing 157 n n C4 C5 HT1 sing 158 n y C4 C7 HT1 sing 159 n y C5 C6 HT1 doub 160 n y C5 H5 HT1 sing 161 n n C6 H6 HT1 sing 162 n n C7 N1 HT1 sing 163 n y C7 N2 HT1 doub 164 n y N1 C8 HT1 sing 165 n y N1 HN1 HT1 sing 166 n n C8 C9 HT1 doub 167 n y C8 C13 HT1 sing 168 n y C9 N2 HT1 sing 169 n y C9 C10 HT1 sing 170 n y C10 C11 HT1 doub 171 n y C10 H10 HT1 sing 172 n n C11 C12 HT1 sing 173 n y C11 H11 HT1 sing 174 n n C12 C13 HT1 doub 175 n y C12 C14 HT1 sing 176 n y C13 H13 HT1 sing 177 n n C14 N3 HT1 sing 178 n y C14 N4 HT1 doub 179 n y N3 C15 HT1 sing 180 n y N3 HN3 HT1 sing 181 n n C15 C16 HT1 doub 182 n y C15 C20 HT1 sing 183 n y C16 N4 HT1 sing 184 n y C16 C17 HT1 sing 185 n y C17 C18 HT1 doub 186 n y C17 H17 HT1 sing 187 n n C18 C19 HT1 sing 188 n y C18 H18 HT1 sing 189 n n C19 C20 HT1 doub 190 n y C19 N5 HT1 sing 191 n n C20 H20 HT1 sing 192 n n N5 C21 HT1 sing 193 n n N5 C24 HT1 sing 194 n n C21 C22 HT1 sing 195 n n C21 H211 HT1 sing 196 n n C21 H212 HT1 sing 197 n n C22 N6 HT1 sing 198 n n C22 H221 HT1 sing 199 n n C22 H222 HT1 sing 200 n n N6 C23 HT1 sing 201 n n N6 C25 HT1 sing 202 n n C23 C24 HT1 sing 203 n n C23 H231 HT1 sing 204 n n C23 H232 HT1 sing 205 n n C24 H241 HT1 sing 206 n n C24 H242 HT1 sing 207 n n C25 H251 HT1 sing 208 n n C25 H252 HT1 sing 209 n n C25 H253 HT1 sing 210 n n C26 C27 HT1 sing 211 n n C26 H261 HT1 sing 212 n n C26 H262 HT1 sing 213 n n C27 H271 HT1 sing 214 n n C27 H272 HT1 sing 215 n n C27 H273 HT1 sing 216 n n # _atom_sites.entry_id 8F42 _atom_sites.fract_transf_matrix[1][1] 0.028278 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028278 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009681 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HT1 _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 25 _pdbx_nonpoly_scheme.pdb_mon_id HT1 _pdbx_nonpoly_scheme.auth_mon_id HT1 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HT1 . . . C 2 -5.06 -6.793 -7.661 1 76.04 ? C1 HT1 101 B 1 HETATM 2 O O1 HT1 . . . C 2 -5.219 -8.011 -6.937 1 75.49 ? O1 HT1 101 B 1 HETATM 3 C C2 HT1 . . . C 2 -6.168 -6.043 -8.094 1 77.95 ? C2 HT1 101 B 1 HETATM 4 C C3 HT1 . . . C 2 -6.024 -4.846 -8.816 1 72.68 ? C3 HT1 101 B 1 HETATM 5 C C4 HT1 . . . C 2 -4.747 -4.394 -9.121 1 70.56 ? C4 HT1 101 B 1 HETATM 6 C C5 HT1 . . . C 2 -3.651 -5.141 -8.685 1 65.88 ? C5 HT1 101 B 1 HETATM 7 C C6 HT1 . . . C 2 -3.788 -6.323 -7.975 1 62.64 ? C6 HT1 101 B 1 HETATM 8 C C7 HT1 . . . C 2 -4.475 -3.199 -9.809 1 68.95 ? C7 HT1 101 B 1 HETATM 9 N N1 HT1 . . . C 2 -3.303 -2.706 -10.276 1 65.72 ? N1 HT1 101 B 1 HETATM 10 C C8 HT1 . . . C 2 -3.505 -1.515 -10.834 1 66.64 ? C8 HT1 101 B 1 HETATM 11 C C9 HT1 . . . C 2 -4.82 -1.227 -10.711 1 71.66 ? C9 HT1 101 B 1 HETATM 12 N N2 HT1 . . . C 2 -5.423 -2.259 -10.07 1 73.56 ? N2 HT1 101 B 1 HETATM 13 C C10 HT1 . . . C 2 -5.272 0.004 -11.243 1 68.31 ? C10 HT1 101 B 1 HETATM 14 C C11 HT1 . . . C 2 -4.401 0.89 -11.869 1 64.71 ? C11 HT1 101 B 1 HETATM 15 C C12 HT1 . . . C 2 -3.065 0.579 -11.972 1 62.52 ? C12 HT1 101 B 1 HETATM 16 C C13 HT1 . . . C 2 -2.622 -0.624 -11.469 1 62.91 ? C13 HT1 101 B 1 HETATM 17 C C14 HT1 . . . C 2 -2.235 1.491 -12.622 1 63.38 ? C14 HT1 101 B 1 HETATM 18 N N3 HT1 . . . C 2 -1.036 1.204 -13.141 1 60.01 ? N3 HT1 101 B 1 HETATM 19 C C15 HT1 . . . C 2 -0.52 2.292 -13.697 1 60.46 ? C15 HT1 101 B 1 HETATM 20 C C16 HT1 . . . C 2 -1.398 3.3 -13.542 1 63.51 ? C16 HT1 101 B 1 HETATM 21 N N4 HT1 . . . C 2 -2.471 2.806 -12.876 1 64.44 ? N4 HT1 101 B 1 HETATM 22 C C17 HT1 . . . C 2 -1.031 4.564 -14.07 1 65.72 ? C17 HT1 101 B 1 HETATM 23 C C18 HT1 . . . C 2 0.187 4.763 -14.73 1 64.18 ? C18 HT1 101 B 1 HETATM 24 C C19 HT1 . . . C 2 1.077 3.707 -14.879 1 63.76 ? C19 HT1 101 B 1 HETATM 25 C C20 HT1 . . . C 2 0.699 2.486 -14.365 1 63.53 ? C20 HT1 101 B 1 HETATM 26 N N5 HT1 . . . C 2 2.194 4.324 -15.618 1 66.81 ? N5 HT1 101 B 1 HETATM 27 C C21 HT1 . . . C 2 3.422 3.711 -15.157 1 66.68 ? C21 HT1 101 B 1 HETATM 28 C C22 HT1 . . . C 2 4.595 3.932 -16.116 1 72.87 ? C22 HT1 101 B 1 HETATM 29 N N6 HT1 . . . C 2 4.411 5.046 -17.021 1 82.06 ? N6 HT1 101 B 1 HETATM 30 C C23 HT1 . . . C 2 3.604 6.155 -16.496 1 76.51 ? C23 HT1 101 B 1 HETATM 31 C C24 HT1 . . . C 2 2.399 5.763 -15.616 1 75.71 ? C24 HT1 101 B 1 HETATM 32 C C25 HT1 . . . C 2 5.709 5.447 -17.557 1 78.67 ? C25 HT1 101 B 1 HETATM 33 C C26 HT1 . . . C 2 -4.453 -8.168 -5.761 1 69.5 ? C26 HT1 101 B 1 HETATM 34 C C27 HT1 . . . C 2 -3.453 -9.322 -5.918 1 60.27 ? C27 HT1 101 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #