data_8F4A # _model_server_result.job_id GUO-s1lGZWW7yTyAz5EtAA _model_server_result.datetime_utc '2024-11-26 22:41:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f4a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8F4A # _exptl.entry_id 8F4A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8F4A _cell.length_a 174.685 _cell.length_b 174.685 _cell.length_c 124.968 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F4A _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 124.968 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 124.968 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 124.968 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8F4A _atom_sites.fract_transf_matrix[1][1] 0.005725 _atom_sites.fract_transf_matrix[1][2] 0.003305 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00661 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008002 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 502 GOL GOL . C 3 XC9 A 1 502 503 XC9 CLX . D 4 HOH A 1 601 62 HOH HOH . D 4 HOH A 2 602 36 HOH HOH . D 4 HOH A 3 603 79 HOH HOH . D 4 HOH A 4 604 70 HOH HOH . D 4 HOH A 5 605 38 HOH HOH . D 4 HOH A 6 606 23 HOH HOH . D 4 HOH A 7 607 54 HOH HOH . D 4 HOH A 8 608 4 HOH HOH . D 4 HOH A 9 609 86 HOH HOH . D 4 HOH A 10 610 13 HOH HOH . D 4 HOH A 11 611 26 HOH HOH . D 4 HOH A 12 612 52 HOH HOH . D 4 HOH A 13 613 12 HOH HOH . D 4 HOH A 14 614 15 HOH HOH . D 4 HOH A 15 615 8 HOH HOH . D 4 HOH A 16 616 32 HOH HOH . D 4 HOH A 17 617 37 HOH HOH . D 4 HOH A 18 618 3 HOH HOH . D 4 HOH A 19 619 53 HOH HOH . D 4 HOH A 20 620 82 HOH HOH . D 4 HOH A 21 621 57 HOH HOH . D 4 HOH A 22 622 41 HOH HOH . D 4 HOH A 23 623 77 HOH HOH . D 4 HOH A 24 624 66 HOH HOH . D 4 HOH A 25 625 6 HOH HOH . D 4 HOH A 26 626 16 HOH HOH . D 4 HOH A 27 627 47 HOH HOH . D 4 HOH A 28 628 9 HOH HOH . D 4 HOH A 29 629 72 HOH HOH . D 4 HOH A 30 630 51 HOH HOH . D 4 HOH A 31 631 1 HOH HOH . D 4 HOH A 32 632 73 HOH HOH . D 4 HOH A 33 633 83 HOH HOH . D 4 HOH A 34 634 35 HOH HOH . D 4 HOH A 35 635 29 HOH HOH . D 4 HOH A 36 636 55 HOH HOH . D 4 HOH A 37 637 39 HOH HOH . D 4 HOH A 38 638 34 HOH HOH . D 4 HOH A 39 639 56 HOH HOH . D 4 HOH A 40 640 61 HOH HOH . D 4 HOH A 41 641 71 HOH HOH . D 4 HOH A 42 642 49 HOH HOH . D 4 HOH A 43 643 63 HOH HOH . D 4 HOH A 44 644 21 HOH HOH . D 4 HOH A 45 645 58 HOH HOH . D 4 HOH A 46 646 31 HOH HOH . D 4 HOH A 47 647 18 HOH HOH . D 4 HOH A 48 648 44 HOH HOH . D 4 HOH A 49 649 43 HOH HOH . D 4 HOH A 50 650 69 HOH HOH . D 4 HOH A 51 651 20 HOH HOH . D 4 HOH A 52 652 2 HOH HOH . D 4 HOH A 53 653 74 HOH HOH . D 4 HOH A 54 654 68 HOH HOH . D 4 HOH A 55 655 67 HOH HOH . D 4 HOH A 56 656 91 HOH HOH . D 4 HOH A 57 657 60 HOH HOH . D 4 HOH A 58 658 84 HOH HOH . D 4 HOH A 59 659 87 HOH HOH . D 4 HOH A 60 660 22 HOH HOH . D 4 HOH A 61 661 27 HOH HOH . D 4 HOH A 62 662 24 HOH HOH . D 4 HOH A 63 663 25 HOH HOH . D 4 HOH A 64 664 85 HOH HOH . D 4 HOH A 65 665 11 HOH HOH . D 4 HOH A 66 666 59 HOH HOH . D 4 HOH A 67 667 40 HOH HOH . D 4 HOH A 68 668 65 HOH HOH . D 4 HOH A 69 669 33 HOH HOH . D 4 HOH A 70 670 64 HOH HOH . D 4 HOH A 71 671 45 HOH HOH . D 4 HOH A 72 672 7 HOH HOH . D 4 HOH A 73 673 5 HOH HOH . D 4 HOH A 74 674 28 HOH HOH . D 4 HOH A 75 675 19 HOH HOH . D 4 HOH A 76 676 50 HOH HOH . D 4 HOH A 77 677 80 HOH HOH . D 4 HOH A 78 678 17 HOH HOH . D 4 HOH A 79 679 78 HOH HOH . D 4 HOH A 80 680 75 HOH HOH . D 4 HOH A 81 681 81 HOH HOH . D 4 HOH A 82 682 14 HOH HOH . D 4 HOH A 83 683 10 HOH HOH . D 4 HOH A 84 684 88 HOH HOH . D 4 HOH A 85 685 42 HOH HOH . D 4 HOH A 86 686 30 HOH HOH . D 4 HOH A 87 687 76 HOH HOH . D 4 HOH A 88 688 46 HOH HOH . D 4 HOH A 89 689 89 HOH HOH . D 4 HOH A 90 690 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 26.189 -20.499 29.053 1 69 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . B 2 27.184 -21.478 29.343 1 70.01 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . B 2 26.412 -19.848 27.703 1 70.06 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . B 2 25.191 -19.872 26.964 1 71.95 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . B 2 26.923 -18.424 27.8 1 69.52 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . B 2 25.855 -17.476 27.789 1 67.83 ? O3 GOL 501 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #