data_8F4A
#
_model_server_result.job_id            2TFW17EUosMVZHlJ0ruLuQ 
_model_server_result.datetime_utc      '2024-11-30 06:22:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8f4a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    8F4A 
#
_exptl.entry_id    8F4A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              505.447 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-[6-[azanylidene-[[azanylidene-[[(4-chlorophenyl)amino]methyl]-$l^{4}-azanyl]methyl]-$l^{4}-azanyl]hexyl]-3-[~{N}-(4-chlorophenyl)carbamimidoyl]guanidine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8F4A 
_cell.length_a            174.685 
_cell.length_b            174.685 
_cell.length_c            124.968 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8F4A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 124.968 
5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 124.968 
6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 124.968 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C22 H30 Cl2 N10' 
_chem_comp.formula_weight    505.447 
_chem_comp.id                XC9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-[6-[azanylidene-[[azanylidene-[[(4-chlorophenyl)amino]methyl]-$l^{4}-azanyl]methyl]-$l^{4}-azanyl]hexyl]-3-[~{N}-(4-chlorophenyl)carbamimidoyl]guanidine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL2 C18 XC9 sing 389 n n 
C18 C19 XC9 doub 390 n y 
C18 C17 XC9 sing 391 n y 
C19 C20 XC9 sing 392 n y 
C17 C16 XC9 doub 393 n y 
C20 C15 XC9 doub 394 n y 
C16 C15 XC9 sing 395 n y 
C15 N10 XC9 sing 396 n n 
C12 C11 XC9 sing 397 n n 
C12 N6 XC9 sing 398 n n 
N10 C14 XC9 sing 399 n n 
C11 C10 XC9 sing 400 n n 
N8 C14 XC9 sing 401 n n 
N8 C13 XC9 sing 402 n n 
N6 C13 XC9 sing 403 n n 
C14 N9 XC9 doub 404 n n 
C13 N7 XC9 doub 405 n n 
C10 H1 XC9 sing 406 n n 
C10 H2 XC9 sing 407 n n 
C11 H4 XC9 sing 408 n n 
C11 H5 XC9 sing 409 n n 
C12 H6 XC9 sing 410 n n 
C12 H7 XC9 sing 411 n n 
N6 H8 XC9 sing 412 n n 
N7 H9 XC9 sing 413 n n 
N8 H10 XC9 sing 414 n n 
N9 H11 XC9 sing 415 n n 
N10 H12 XC9 sing 416 n n 
C16 H13 XC9 sing 417 n n 
C17 H14 XC9 sing 418 n n 
C19 H15 XC9 sing 419 n n 
C20 H16 XC9 sing 420 n n 
C10 C1 XC9 sing 421 n n 
C1 C2 XC9 sing 422 n n 
C2 C3 XC9 sing 423 n n 
C3 N1 XC9 sing 424 n n 
N1 C4 XC9 sing 425 n n 
C4 N2 XC9 sing 426 n n 
N2 C5 XC9 sing 427 n n 
C5 N3 XC9 sing 428 n n 
N3 C6 XC9 sing 429 n n 
C6 C7 XC9 sing 430 n y 
C7 C8 XC9 doub 431 n y 
C8 C9 XC9 sing 432 n y 
C9 C21 XC9 doub 433 n y 
C21 C22 XC9 sing 434 n y 
C22 C6 XC9 doub 435 n y 
C9 CL1 XC9 sing 436 n n 
C1 H3 XC9 sing 437 n n 
C1 H17 XC9 sing 438 n n 
C2 H18 XC9 sing 439 n n 
C2 H19 XC9 sing 440 n n 
C3 H20 XC9 sing 441 n n 
C3 H21 XC9 sing 442 n n 
N3 H26 XC9 sing 443 n n 
C7 H27 XC9 sing 444 n n 
C8 H28 XC9 sing 445 n n 
C21 H29 XC9 sing 446 n n 
C22 H30 XC9 sing 447 n n 
C4 N4 XC9 doub 448 n n 
C5 N5 XC9 doub 449 n n 
N1 H31 XC9 sing 450 n n 
N2 H22 XC9 sing 451 n n 
N4 H23 XC9 sing 452 n n 
N5 H24 XC9 sing 453 n n 
#
_atom_sites.entry_id                     8F4A 
_atom_sites.fract_transf_matrix[1][1]    0.005725 
_atom_sites.fract_transf_matrix[1][2]    0.003305 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00661 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008002 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 501 502 GOL GOL . 
C 3 XC9 A 1 502 503 XC9 CLX . 
D 4 HOH A 1 601 62 HOH HOH . 
D 4 HOH A 2 602 36 HOH HOH . 
D 4 HOH A 3 603 79 HOH HOH . 
D 4 HOH A 4 604 70 HOH HOH . 
D 4 HOH A 5 605 38 HOH HOH . 
D 4 HOH A 6 606 23 HOH HOH . 
D 4 HOH A 7 607 54 HOH HOH . 
D 4 HOH A 8 608 4 HOH HOH . 
D 4 HOH A 9 609 86 HOH HOH . 
D 4 HOH A 10 610 13 HOH HOH . 
D 4 HOH A 11 611 26 HOH HOH . 
D 4 HOH A 12 612 52 HOH HOH . 
D 4 HOH A 13 613 12 HOH HOH . 
D 4 HOH A 14 614 15 HOH HOH . 
D 4 HOH A 15 615 8 HOH HOH . 
D 4 HOH A 16 616 32 HOH HOH . 
D 4 HOH A 17 617 37 HOH HOH . 
D 4 HOH A 18 618 3 HOH HOH . 
D 4 HOH A 19 619 53 HOH HOH . 
D 4 HOH A 20 620 82 HOH HOH . 
D 4 HOH A 21 621 57 HOH HOH . 
D 4 HOH A 22 622 41 HOH HOH . 
D 4 HOH A 23 623 77 HOH HOH . 
D 4 HOH A 24 624 66 HOH HOH . 
D 4 HOH A 25 625 6 HOH HOH . 
D 4 HOH A 26 626 16 HOH HOH . 
D 4 HOH A 27 627 47 HOH HOH . 
D 4 HOH A 28 628 9 HOH HOH . 
D 4 HOH A 29 629 72 HOH HOH . 
D 4 HOH A 30 630 51 HOH HOH . 
D 4 HOH A 31 631 1 HOH HOH . 
D 4 HOH A 32 632 73 HOH HOH . 
D 4 HOH A 33 633 83 HOH HOH . 
D 4 HOH A 34 634 35 HOH HOH . 
D 4 HOH A 35 635 29 HOH HOH . 
D 4 HOH A 36 636 55 HOH HOH . 
D 4 HOH A 37 637 39 HOH HOH . 
D 4 HOH A 38 638 34 HOH HOH . 
D 4 HOH A 39 639 56 HOH HOH . 
D 4 HOH A 40 640 61 HOH HOH . 
D 4 HOH A 41 641 71 HOH HOH . 
D 4 HOH A 42 642 49 HOH HOH . 
D 4 HOH A 43 643 63 HOH HOH . 
D 4 HOH A 44 644 21 HOH HOH . 
D 4 HOH A 45 645 58 HOH HOH . 
D 4 HOH A 46 646 31 HOH HOH . 
D 4 HOH A 47 647 18 HOH HOH . 
D 4 HOH A 48 648 44 HOH HOH . 
D 4 HOH A 49 649 43 HOH HOH . 
D 4 HOH A 50 650 69 HOH HOH . 
D 4 HOH A 51 651 20 HOH HOH . 
D 4 HOH A 52 652 2 HOH HOH . 
D 4 HOH A 53 653 74 HOH HOH . 
D 4 HOH A 54 654 68 HOH HOH . 
D 4 HOH A 55 655 67 HOH HOH . 
D 4 HOH A 56 656 91 HOH HOH . 
D 4 HOH A 57 657 60 HOH HOH . 
D 4 HOH A 58 658 84 HOH HOH . 
D 4 HOH A 59 659 87 HOH HOH . 
D 4 HOH A 60 660 22 HOH HOH . 
D 4 HOH A 61 661 27 HOH HOH . 
D 4 HOH A 62 662 24 HOH HOH . 
D 4 HOH A 63 663 25 HOH HOH . 
D 4 HOH A 64 664 85 HOH HOH . 
D 4 HOH A 65 665 11 HOH HOH . 
D 4 HOH A 66 666 59 HOH HOH . 
D 4 HOH A 67 667 40 HOH HOH . 
D 4 HOH A 68 668 65 HOH HOH . 
D 4 HOH A 69 669 33 HOH HOH . 
D 4 HOH A 70 670 64 HOH HOH . 
D 4 HOH A 71 671 45 HOH HOH . 
D 4 HOH A 72 672 7 HOH HOH . 
D 4 HOH A 73 673 5 HOH HOH . 
D 4 HOH A 74 674 28 HOH HOH . 
D 4 HOH A 75 675 19 HOH HOH . 
D 4 HOH A 76 676 50 HOH HOH . 
D 4 HOH A 77 677 80 HOH HOH . 
D 4 HOH A 78 678 17 HOH HOH . 
D 4 HOH A 79 679 78 HOH HOH . 
D 4 HOH A 80 680 75 HOH HOH . 
D 4 HOH A 81 681 81 HOH HOH . 
D 4 HOH A 82 682 14 HOH HOH . 
D 4 HOH A 83 683 10 HOH HOH . 
D 4 HOH A 84 684 88 HOH HOH . 
D 4 HOH A 85 685 42 HOH HOH . 
D 4 HOH A 86 686 30 HOH HOH . 
D 4 HOH A 87 687 76 HOH HOH . 
D 4 HOH A 88 688 46 HOH HOH . 
D 4 HOH A 89 689 89 HOH HOH . 
D 4 HOH A 90 690 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 CL CL2 XC9 . . . C 3 21.613 -15.098 32.193 1 41.53 ? CL2 XC9 502 A 1 
HETATM 2 C C10 XC9 . . . C 3 18.488 -7.628 38.169 1 49.85 ? C10 XC9 502 A 1 
HETATM 3 C C11 XC9 . . . C 3 17.305 -8.082 37.319 1 50.17 ? C11 XC9 502 A 1 
HETATM 4 C C12 XC9 . . . C 3 17.463 -9.491 36.763 1 50.11 ? C12 XC9 502 A 1 
HETATM 5 N N6 XC9 . . . C 3 17.03 -10.52 37.758 1 48.66 ? N6 XC9 502 A 1 
HETATM 6 C C13 XC9 . . . C 3 17.884 -11.409 38.262 1 47.51 ? C13 XC9 502 A 1 
HETATM 7 N N7 XC9 . . . C 3 17.579 -12.066 39.394 1 47.05 ? N7 XC9 502 A 1 
HETATM 8 N N8 XC9 . . . C 3 19.015 -11.74 37.639 1 46.53 ? N8 XC9 502 A 1 
HETATM 9 C C14 XC9 . . . C 3 20.273 -11.681 38.062 1 43.55 ? C14 XC9 502 A 1 
HETATM 10 N N9 XC9 . . . C 3 20.625 -11.197 39.26 1 42.58 ? N9 XC9 502 A 1 
HETATM 11 N N10 XC9 . . . C 3 21.304 -12.055 37.263 1 42.86 ? N10 XC9 502 A 1 
HETATM 12 C C15 XC9 . . . C 3 21.324 -12.793 36.049 1 40.87 ? C15 XC9 502 A 1 
HETATM 13 C C16 XC9 . . . C 3 22.556 -13.25 35.594 1 39.63 ? C16 XC9 502 A 1 
HETATM 14 C C17 XC9 . . . C 3 22.652 -13.96 34.41 1 39.17 ? C17 XC9 502 A 1 
HETATM 15 C C18 XC9 . . . C 3 21.513 -14.204 33.68 1 39.57 ? C18 XC9 502 A 1 
HETATM 16 C C19 XC9 . . . C 3 20.284 -13.753 34.101 1 40.31 ? C19 XC9 502 A 1 
HETATM 17 C C20 XC9 . . . C 3 20.189 -13.042 35.284 1 40.29 ? C20 XC9 502 A 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           17 
#