data_8F4S # _model_server_result.job_id fj85nT2_kDu3QQDx1ryTPw _model_server_result.datetime_utc '2024-11-21 09:26:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f4s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":7104}' # _entry.id 8F4S # _exptl.entry_id 8F4S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8F4S _cell.length_a 170.847 _cell.length_b 170.847 _cell.length_c 51.881 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F4S _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ARG 89 A ARG 6884 1_555 C NA NA . A NA 7101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc2 A O GLN 90 A GLN 6885 1_555 C NA NA . A NA 7101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc3 A O LEU 92 A LEU 6887 1_555 C NA NA . A NA 7101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc4 C NA NA . A NA 7101 1_555 L O HOH . A HOH 7322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc5 C NA NA . A NA 7101 1_555 L O HOH . A HOH 7351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc6 B SG CYS 77 B CYS 4327 1_555 J ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc7 B SG CYS 80 B CYS 4330 1_555 J ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc8 B NE2 HIS 86 B HIS 4336 1_555 J ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc9 B SG CYS 93 B CYS 4343 1_555 J ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc10 B SG CYS 120 B CYS 4370 1_555 K ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc11 B SG CYS 123 B CYS 4373 1_555 K ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc12 B SG CYS 131 B CYS 4381 1_555 K ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc13 B SG CYS 133 B CYS 4383 1_555 K ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 83 n n C O2 FMT sing 84 n n C H FMT sing 85 n n O2 HO2 FMT sing 86 n n # _atom_sites.entry_id 8F4S _atom_sites.fract_transf_matrix[1][1] 0.005853 _atom_sites.fract_transf_matrix[1][2] 0.003379 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006759 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019275 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA A 1 7101 3 NA NA . D 4 XDU A 1 7102 4 XDU MC6 . E 5 FMT A 1 7103 5 FMT FMT . F 5 FMT A 1 7104 6 FMT FMT . G 5 FMT A 1 7105 7 FMT FMT . H 5 FMT A 1 7106 8 FMT FMT . I 5 FMT A 1 7107 9 FMT FMT . J 6 ZN B 1 4401 1 ZN ZN . K 6 ZN B 1 4402 2 ZN ZN . L 7 HOH A 1 7201 154 HOH HOH . L 7 HOH A 2 7202 151 HOH HOH . L 7 HOH A 3 7203 126 HOH HOH . L 7 HOH A 4 7204 193 HOH HOH . L 7 HOH A 5 7205 17 HOH HOH . L 7 HOH A 6 7206 23 HOH HOH . L 7 HOH A 7 7207 20 HOH HOH . L 7 HOH A 8 7208 169 HOH HOH . L 7 HOH A 9 7209 47 HOH HOH . L 7 HOH A 10 7210 185 HOH HOH . L 7 HOH A 11 7211 84 HOH HOH . L 7 HOH A 12 7212 54 HOH HOH . L 7 HOH A 13 7213 122 HOH HOH . L 7 HOH A 14 7214 194 HOH HOH . L 7 HOH A 15 7215 69 HOH HOH . L 7 HOH A 16 7216 59 HOH HOH . L 7 HOH A 17 7217 76 HOH HOH . L 7 HOH A 18 7218 184 HOH HOH . L 7 HOH A 19 7219 65 HOH HOH . L 7 HOH A 20 7220 110 HOH HOH . L 7 HOH A 21 7221 186 HOH HOH . L 7 HOH A 22 7222 137 HOH HOH . L 7 HOH A 23 7223 139 HOH HOH . L 7 HOH A 24 7224 125 HOH HOH . L 7 HOH A 25 7225 158 HOH HOH . L 7 HOH A 26 7226 70 HOH HOH . L 7 HOH A 27 7227 115 HOH HOH . L 7 HOH A 28 7228 162 HOH HOH . L 7 HOH A 29 7229 46 HOH HOH . L 7 HOH A 30 7230 81 HOH HOH . L 7 HOH A 31 7231 92 HOH HOH . L 7 HOH A 32 7232 62 HOH HOH . L 7 HOH A 33 7233 66 HOH HOH . L 7 HOH A 34 7234 33 HOH HOH . L 7 HOH A 35 7235 134 HOH HOH . L 7 HOH A 36 7236 138 HOH HOH . L 7 HOH A 37 7237 39 HOH HOH . L 7 HOH A 38 7238 87 HOH HOH . L 7 HOH A 39 7239 131 HOH HOH . L 7 HOH A 40 7240 191 HOH HOH . L 7 HOH A 41 7241 97 HOH HOH . L 7 HOH A 42 7242 41 HOH HOH . L 7 HOH A 43 7243 14 HOH HOH . L 7 HOH A 44 7244 61 HOH HOH . L 7 HOH A 45 7245 89 HOH HOH . L 7 HOH A 46 7246 18 HOH HOH . L 7 HOH A 47 7247 98 HOH HOH . L 7 HOH A 48 7248 103 HOH HOH . L 7 HOH A 49 7249 44 HOH HOH . L 7 HOH A 50 7250 10 HOH HOH . L 7 HOH A 51 7251 99 HOH HOH . L 7 HOH A 52 7252 157 HOH HOH . L 7 HOH A 53 7253 56 HOH HOH . L 7 HOH A 54 7254 173 HOH HOH . L 7 HOH A 55 7255 30 HOH HOH . L 7 HOH A 56 7256 207 HOH HOH . L 7 HOH A 57 7257 74 HOH HOH . L 7 HOH A 58 7258 120 HOH HOH . L 7 HOH A 59 7259 43 HOH HOH . L 7 HOH A 60 7260 11 HOH HOH . L 7 HOH A 61 7261 104 HOH HOH . L 7 HOH A 62 7262 93 HOH HOH . L 7 HOH A 63 7263 170 HOH HOH . L 7 HOH A 64 7264 22 HOH HOH . L 7 HOH A 65 7265 85 HOH HOH . L 7 HOH A 66 7266 51 HOH HOH . L 7 HOH A 67 7267 29 HOH HOH . L 7 HOH A 68 7268 188 HOH HOH . L 7 HOH A 69 7269 40 HOH HOH . L 7 HOH A 70 7270 166 HOH HOH . L 7 HOH A 71 7271 128 HOH HOH . L 7 HOH A 72 7272 77 HOH HOH . L 7 HOH A 73 7273 35 HOH HOH . L 7 HOH A 74 7274 15 HOH HOH . L 7 HOH A 75 7275 183 HOH HOH . L 7 HOH A 76 7276 136 HOH HOH . L 7 HOH A 77 7277 12 HOH HOH . L 7 HOH A 78 7278 147 HOH HOH . L 7 HOH A 79 7279 111 HOH HOH . L 7 HOH A 80 7280 112 HOH HOH . L 7 HOH A 81 7281 100 HOH HOH . L 7 HOH A 82 7282 187 HOH HOH . L 7 HOH A 83 7283 109 HOH HOH . L 7 HOH A 84 7284 24 HOH HOH . L 7 HOH A 85 7285 75 HOH HOH . L 7 HOH A 86 7286 16 HOH HOH . L 7 HOH A 87 7287 135 HOH HOH . L 7 HOH A 88 7288 13 HOH HOH . L 7 HOH A 89 7289 53 HOH HOH . L 7 HOH A 90 7290 71 HOH HOH . L 7 HOH A 91 7291 108 HOH HOH . L 7 HOH A 92 7292 83 HOH HOH . L 7 HOH A 93 7293 34 HOH HOH . L 7 HOH A 94 7294 168 HOH HOH . L 7 HOH A 95 7295 123 HOH HOH . L 7 HOH A 96 7296 67 HOH HOH . L 7 HOH A 97 7297 64 HOH HOH . L 7 HOH A 98 7298 106 HOH HOH . L 7 HOH A 99 7299 49 HOH HOH . L 7 HOH A 100 7300 212 HOH HOH . L 7 HOH A 101 7301 165 HOH HOH . L 7 HOH A 102 7302 48 HOH HOH . L 7 HOH A 103 7303 57 HOH HOH . L 7 HOH A 104 7304 42 HOH HOH . L 7 HOH A 105 7305 130 HOH HOH . L 7 HOH A 106 7306 25 HOH HOH . L 7 HOH A 107 7307 78 HOH HOH . L 7 HOH A 108 7308 171 HOH HOH . L 7 HOH A 109 7309 37 HOH HOH . L 7 HOH A 110 7310 88 HOH HOH . L 7 HOH A 111 7311 113 HOH HOH . L 7 HOH A 112 7312 156 HOH HOH . L 7 HOH A 113 7313 215 HOH HOH . L 7 HOH A 114 7314 176 HOH HOH . L 7 HOH A 115 7315 197 HOH HOH . L 7 HOH A 116 7316 96 HOH HOH . L 7 HOH A 117 7317 150 HOH HOH . L 7 HOH A 118 7318 145 HOH HOH . L 7 HOH A 119 7319 146 HOH HOH . L 7 HOH A 120 7320 50 HOH HOH . L 7 HOH A 121 7321 206 HOH HOH . L 7 HOH A 122 7322 90 HOH HOH . L 7 HOH A 123 7323 80 HOH HOH . L 7 HOH A 124 7324 192 HOH HOH . L 7 HOH A 125 7325 195 HOH HOH . L 7 HOH A 126 7326 107 HOH HOH . L 7 HOH A 127 7327 129 HOH HOH . L 7 HOH A 128 7328 178 HOH HOH . L 7 HOH A 129 7329 117 HOH HOH . L 7 HOH A 130 7330 82 HOH HOH . L 7 HOH A 131 7331 73 HOH HOH . L 7 HOH A 132 7332 132 HOH HOH . L 7 HOH A 133 7333 189 HOH HOH . L 7 HOH A 134 7334 21 HOH HOH . L 7 HOH A 135 7335 60 HOH HOH . L 7 HOH A 136 7336 72 HOH HOH . L 7 HOH A 137 7337 127 HOH HOH . L 7 HOH A 138 7338 36 HOH HOH . L 7 HOH A 139 7339 63 HOH HOH . L 7 HOH A 140 7340 172 HOH HOH . L 7 HOH A 141 7341 155 HOH HOH . L 7 HOH A 142 7342 190 HOH HOH . L 7 HOH A 143 7343 205 HOH HOH . L 7 HOH A 144 7344 32 HOH HOH . L 7 HOH A 145 7345 160 HOH HOH . L 7 HOH A 146 7346 105 HOH HOH . L 7 HOH A 147 7347 179 HOH HOH . L 7 HOH A 148 7348 209 HOH HOH . L 7 HOH A 149 7349 181 HOH HOH . L 7 HOH A 150 7350 211 HOH HOH . L 7 HOH A 151 7351 148 HOH HOH . L 7 HOH A 152 7352 167 HOH HOH . L 7 HOH A 153 7353 45 HOH HOH . L 7 HOH A 154 7354 79 HOH HOH . L 7 HOH A 155 7355 68 HOH HOH . L 7 HOH A 156 7356 124 HOH HOH . L 7 HOH A 157 7357 204 HOH HOH . L 7 HOH A 158 7358 203 HOH HOH . L 7 HOH A 159 7359 196 HOH HOH . L 7 HOH A 160 7360 149 HOH HOH . L 7 HOH A 161 7361 161 HOH HOH . L 7 HOH A 162 7362 121 HOH HOH . L 7 HOH A 163 7363 159 HOH HOH . L 7 HOH A 164 7364 177 HOH HOH . L 7 HOH A 165 7365 152 HOH HOH . L 7 HOH A 166 7366 86 HOH HOH . L 7 HOH A 167 7367 52 HOH HOH . L 7 HOH A 168 7368 133 HOH HOH . L 7 HOH A 169 7369 216 HOH HOH . L 7 HOH A 170 7370 118 HOH HOH . L 7 HOH A 171 7371 164 HOH HOH . L 7 HOH A 172 7372 208 HOH HOH . L 7 HOH A 173 7373 114 HOH HOH . L 7 HOH A 174 7374 55 HOH HOH . L 7 HOH A 175 7375 102 HOH HOH . L 7 HOH A 176 7376 116 HOH HOH . L 7 HOH A 177 7377 180 HOH HOH . L 7 HOH A 178 7378 213 HOH HOH . L 7 HOH A 179 7379 119 HOH HOH . M 7 HOH B 1 4501 142 HOH HOH . M 7 HOH B 2 4502 27 HOH HOH . M 7 HOH B 3 4503 19 HOH HOH . M 7 HOH B 4 4504 214 HOH HOH . M 7 HOH B 5 4505 26 HOH HOH . M 7 HOH B 6 4506 198 HOH HOH . M 7 HOH B 7 4507 28 HOH HOH . M 7 HOH B 8 4508 31 HOH HOH . M 7 HOH B 9 4509 141 HOH HOH . M 7 HOH B 10 4510 174 HOH HOH . M 7 HOH B 11 4511 94 HOH HOH . M 7 HOH B 12 4512 95 HOH HOH . M 7 HOH B 13 4513 175 HOH HOH . M 7 HOH B 14 4514 140 HOH HOH . M 7 HOH B 15 4515 101 HOH HOH . M 7 HOH B 16 4516 163 HOH HOH . M 7 HOH B 17 4517 201 HOH HOH . M 7 HOH B 18 4518 91 HOH HOH . M 7 HOH B 19 4519 153 HOH HOH . M 7 HOH B 20 4520 58 HOH HOH . M 7 HOH B 21 4521 210 HOH HOH . M 7 HOH B 22 4522 202 HOH HOH . M 7 HOH B 23 4523 199 HOH HOH . M 7 HOH B 24 4524 144 HOH HOH . M 7 HOH B 25 4525 200 HOH HOH . M 7 HOH B 26 4526 38 HOH HOH . M 7 HOH B 27 4527 182 HOH HOH . M 7 HOH B 28 4528 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . F 5 103.054 12.199 9.144 1 64.42 ? C FMT 7104 A 1 HETATM 2 O O1 FMT . . . F 5 103.213 12.831 10.167 1 60.29 ? O1 FMT 7104 A 1 HETATM 3 O O2 FMT . . . F 5 101.956 12.202 8.455 1 64.78 ? O2 FMT 7104 A 1 # _model_server_stats.io_time_ms 99 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 3 #