data_8F4T # _model_server_result.job_id ABAbbkjdXxjDWdfKjXc5rQ _model_server_result.datetime_utc '2024-10-16 08:02:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f4t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 8F4T # _exptl.entry_id 8F4T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8F4T _cell.length_a 175.088 _cell.length_b 175.088 _cell.length_c 123.104 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F4T _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 123.104 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 123.104 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 123.104 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 8F4T _atom_sites.fract_transf_matrix[1][1] 0.005711 _atom_sites.fract_transf_matrix[1][2] 0.003297 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006595 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008123 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XEW A 1 501 502 XEW PGL . C 3 GOL A 1 502 14 GOL GOL . D 3 GOL A 1 503 15 GOL GOL . E 3 GOL A 1 504 16 GOL GOL . F 4 PEG A 1 505 17 PEG PEG . G 5 DMS A 1 506 1 DMS DMS . H 3 GOL A 1 507 12 GOL GOL . I 6 HOH A 1 601 297 HOH HOH . I 6 HOH A 2 602 414 HOH HOH . I 6 HOH A 3 603 89 HOH HOH . I 6 HOH A 4 604 428 HOH HOH . I 6 HOH A 5 605 418 HOH HOH . I 6 HOH A 6 606 477 HOH HOH . I 6 HOH A 7 607 432 HOH HOH . I 6 HOH A 8 608 479 HOH HOH . I 6 HOH A 9 609 456 HOH HOH . I 6 HOH A 10 610 90 HOH HOH . I 6 HOH A 11 611 434 HOH HOH . I 6 HOH A 12 612 366 HOH HOH . I 6 HOH A 13 613 439 HOH HOH . I 6 HOH A 14 614 58 HOH HOH . I 6 HOH A 15 615 159 HOH HOH . I 6 HOH A 16 616 423 HOH HOH . I 6 HOH A 17 617 126 HOH HOH . I 6 HOH A 18 618 106 HOH HOH . I 6 HOH A 19 619 160 HOH HOH . I 6 HOH A 20 620 88 HOH HOH . I 6 HOH A 21 621 296 HOH HOH . I 6 HOH A 22 622 270 HOH HOH . I 6 HOH A 23 623 47 HOH HOH . I 6 HOH A 24 624 165 HOH HOH . I 6 HOH A 25 625 148 HOH HOH . I 6 HOH A 26 626 117 HOH HOH . I 6 HOH A 27 627 400 HOH HOH . I 6 HOH A 28 628 99 HOH HOH . I 6 HOH A 29 629 112 HOH HOH . I 6 HOH A 30 630 116 HOH HOH . I 6 HOH A 31 631 62 HOH HOH . I 6 HOH A 32 632 34 HOH HOH . I 6 HOH A 33 633 409 HOH HOH . I 6 HOH A 34 634 77 HOH HOH . I 6 HOH A 35 635 295 HOH HOH . I 6 HOH A 36 636 114 HOH HOH . I 6 HOH A 37 637 403 HOH HOH . I 6 HOH A 38 638 164 HOH HOH . I 6 HOH A 39 639 449 HOH HOH . I 6 HOH A 40 640 52 HOH HOH . I 6 HOH A 41 641 56 HOH HOH . I 6 HOH A 42 642 18 HOH HOH . I 6 HOH A 43 643 424 HOH HOH . I 6 HOH A 44 644 59 HOH HOH . I 6 HOH A 45 645 113 HOH HOH . I 6 HOH A 46 646 42 HOH HOH . I 6 HOH A 47 647 86 HOH HOH . I 6 HOH A 48 648 422 HOH HOH . I 6 HOH A 49 649 140 HOH HOH . I 6 HOH A 50 650 15 HOH HOH . I 6 HOH A 51 651 421 HOH HOH . I 6 HOH A 52 652 110 HOH HOH . I 6 HOH A 53 653 72 HOH HOH . I 6 HOH A 54 654 185 HOH HOH . I 6 HOH A 55 655 170 HOH HOH . I 6 HOH A 56 656 53 HOH HOH . I 6 HOH A 57 657 17 HOH HOH . I 6 HOH A 58 658 433 HOH HOH . I 6 HOH A 59 659 478 HOH HOH . I 6 HOH A 60 660 20 HOH HOH . I 6 HOH A 61 661 105 HOH HOH . I 6 HOH A 62 662 183 HOH HOH . I 6 HOH A 63 663 75 HOH HOH . I 6 HOH A 64 664 150 HOH HOH . I 6 HOH A 65 665 468 HOH HOH . I 6 HOH A 66 666 93 HOH HOH . I 6 HOH A 67 667 6 HOH HOH . I 6 HOH A 68 668 41 HOH HOH . I 6 HOH A 69 669 102 HOH HOH . I 6 HOH A 70 670 29 HOH HOH . I 6 HOH A 71 671 231 HOH HOH . I 6 HOH A 72 672 111 HOH HOH . I 6 HOH A 73 673 199 HOH HOH . I 6 HOH A 74 674 152 HOH HOH . I 6 HOH A 75 675 248 HOH HOH . I 6 HOH A 76 676 31 HOH HOH . I 6 HOH A 77 677 471 HOH HOH . I 6 HOH A 78 678 32 HOH HOH . I 6 HOH A 79 679 71 HOH HOH . I 6 HOH A 80 680 408 HOH HOH . I 6 HOH A 81 681 8 HOH HOH . I 6 HOH A 82 682 35 HOH HOH . I 6 HOH A 83 683 37 HOH HOH . I 6 HOH A 84 684 215 HOH HOH . I 6 HOH A 85 685 5 HOH HOH . I 6 HOH A 86 686 144 HOH HOH . I 6 HOH A 87 687 33 HOH HOH . I 6 HOH A 88 688 448 HOH HOH . I 6 HOH A 89 689 84 HOH HOH . I 6 HOH A 90 690 410 HOH HOH . I 6 HOH A 91 691 133 HOH HOH . I 6 HOH A 92 692 66 HOH HOH . I 6 HOH A 93 693 68 HOH HOH . I 6 HOH A 94 694 95 HOH HOH . I 6 HOH A 95 695 252 HOH HOH . I 6 HOH A 96 696 73 HOH HOH . I 6 HOH A 97 697 64 HOH HOH . I 6 HOH A 98 698 1 HOH HOH . I 6 HOH A 99 699 143 HOH HOH . I 6 HOH A 100 700 119 HOH HOH . I 6 HOH A 101 701 426 HOH HOH . I 6 HOH A 102 702 209 HOH HOH . I 6 HOH A 103 703 134 HOH HOH . I 6 HOH A 104 704 153 HOH HOH . I 6 HOH A 105 705 427 HOH HOH . I 6 HOH A 106 706 11 HOH HOH . I 6 HOH A 107 707 14 HOH HOH . I 6 HOH A 108 708 19 HOH HOH . I 6 HOH A 109 709 450 HOH HOH . I 6 HOH A 110 710 236 HOH HOH . I 6 HOH A 111 711 129 HOH HOH . I 6 HOH A 112 712 51 HOH HOH . I 6 HOH A 113 713 12 HOH HOH . I 6 HOH A 114 714 473 HOH HOH . I 6 HOH A 115 715 191 HOH HOH . I 6 HOH A 116 716 67 HOH HOH . I 6 HOH A 117 717 3 HOH HOH . I 6 HOH A 118 718 104 HOH HOH . I 6 HOH A 119 719 420 HOH HOH . I 6 HOH A 120 720 425 HOH HOH . I 6 HOH A 121 721 39 HOH HOH . I 6 HOH A 122 722 82 HOH HOH . I 6 HOH A 123 723 85 HOH HOH . I 6 HOH A 124 724 22 HOH HOH . I 6 HOH A 125 725 60 HOH HOH . I 6 HOH A 126 726 46 HOH HOH . I 6 HOH A 127 727 131 HOH HOH . I 6 HOH A 128 728 453 HOH HOH . I 6 HOH A 129 729 24 HOH HOH . I 6 HOH A 130 730 480 HOH HOH . I 6 HOH A 131 731 36 HOH HOH . I 6 HOH A 132 732 118 HOH HOH . I 6 HOH A 133 733 438 HOH HOH . I 6 HOH A 134 734 128 HOH HOH . I 6 HOH A 135 735 55 HOH HOH . I 6 HOH A 136 736 419 HOH HOH . I 6 HOH A 137 737 161 HOH HOH . I 6 HOH A 138 738 178 HOH HOH . I 6 HOH A 139 739 313 HOH HOH . I 6 HOH A 140 740 202 HOH HOH . I 6 HOH A 141 741 38 HOH HOH . I 6 HOH A 142 742 155 HOH HOH . I 6 HOH A 143 743 132 HOH HOH . I 6 HOH A 144 744 87 HOH HOH . I 6 HOH A 145 745 4 HOH HOH . I 6 HOH A 146 746 49 HOH HOH . I 6 HOH A 147 747 25 HOH HOH . I 6 HOH A 148 748 174 HOH HOH . I 6 HOH A 149 749 402 HOH HOH . I 6 HOH A 150 750 466 HOH HOH . I 6 HOH A 151 751 81 HOH HOH . I 6 HOH A 152 752 141 HOH HOH . I 6 HOH A 153 753 69 HOH HOH . I 6 HOH A 154 754 122 HOH HOH . I 6 HOH A 155 755 48 HOH HOH . I 6 HOH A 156 756 399 HOH HOH . I 6 HOH A 157 757 40 HOH HOH . I 6 HOH A 158 758 83 HOH HOH . I 6 HOH A 159 759 204 HOH HOH . I 6 HOH A 160 760 120 HOH HOH . I 6 HOH A 161 761 330 HOH HOH . I 6 HOH A 162 762 13 HOH HOH . I 6 HOH A 163 763 184 HOH HOH . I 6 HOH A 164 764 65 HOH HOH . I 6 HOH A 165 765 171 HOH HOH . I 6 HOH A 166 766 157 HOH HOH . I 6 HOH A 167 767 445 HOH HOH . I 6 HOH A 168 768 212 HOH HOH . I 6 HOH A 169 769 190 HOH HOH . I 6 HOH A 170 770 27 HOH HOH . I 6 HOH A 171 771 115 HOH HOH . I 6 HOH A 172 772 163 HOH HOH . I 6 HOH A 173 773 462 HOH HOH . I 6 HOH A 174 774 224 HOH HOH . I 6 HOH A 175 775 43 HOH HOH . I 6 HOH A 176 776 45 HOH HOH . I 6 HOH A 177 777 124 HOH HOH . I 6 HOH A 178 778 329 HOH HOH . I 6 HOH A 179 779 476 HOH HOH . I 6 HOH A 180 780 123 HOH HOH . I 6 HOH A 181 781 440 HOH HOH . I 6 HOH A 182 782 80 HOH HOH . I 6 HOH A 183 783 23 HOH HOH . I 6 HOH A 184 784 415 HOH HOH . I 6 HOH A 185 785 57 HOH HOH . I 6 HOH A 186 786 469 HOH HOH . I 6 HOH A 187 787 109 HOH HOH . I 6 HOH A 188 788 373 HOH HOH . I 6 HOH A 189 789 28 HOH HOH . I 6 HOH A 190 790 100 HOH HOH . I 6 HOH A 191 791 76 HOH HOH . I 6 HOH A 192 792 214 HOH HOH . I 6 HOH A 193 793 465 HOH HOH . I 6 HOH A 194 794 7 HOH HOH . I 6 HOH A 195 795 429 HOH HOH . I 6 HOH A 196 796 26 HOH HOH . I 6 HOH A 197 797 151 HOH HOH . I 6 HOH A 198 798 101 HOH HOH . I 6 HOH A 199 799 30 HOH HOH . I 6 HOH A 200 800 244 HOH HOH . I 6 HOH A 201 801 158 HOH HOH . I 6 HOH A 202 802 103 HOH HOH . I 6 HOH A 203 803 320 HOH HOH . I 6 HOH A 204 804 326 HOH HOH . I 6 HOH A 205 805 166 HOH HOH . I 6 HOH A 206 806 200 HOH HOH . I 6 HOH A 207 807 79 HOH HOH . I 6 HOH A 208 808 9 HOH HOH . I 6 HOH A 209 809 2 HOH HOH . I 6 HOH A 210 810 44 HOH HOH . I 6 HOH A 211 811 54 HOH HOH . I 6 HOH A 212 812 138 HOH HOH . I 6 HOH A 213 813 201 HOH HOH . I 6 HOH A 214 814 436 HOH HOH . I 6 HOH A 215 815 475 HOH HOH . I 6 HOH A 216 816 272 HOH HOH . I 6 HOH A 217 817 130 HOH HOH . I 6 HOH A 218 818 198 HOH HOH . I 6 HOH A 219 819 257 HOH HOH . I 6 HOH A 220 820 457 HOH HOH . I 6 HOH A 221 821 401 HOH HOH . I 6 HOH A 222 822 92 HOH HOH . I 6 HOH A 223 823 10 HOH HOH . I 6 HOH A 224 824 472 HOH HOH . I 6 HOH A 225 825 107 HOH HOH . I 6 HOH A 226 826 127 HOH HOH . I 6 HOH A 227 827 435 HOH HOH . I 6 HOH A 228 828 173 HOH HOH . I 6 HOH A 229 829 121 HOH HOH . I 6 HOH A 230 830 441 HOH HOH . I 6 HOH A 231 831 247 HOH HOH . I 6 HOH A 232 832 265 HOH HOH . I 6 HOH A 233 833 442 HOH HOH . I 6 HOH A 234 834 197 HOH HOH . I 6 HOH A 235 835 63 HOH HOH . I 6 HOH A 236 836 108 HOH HOH . I 6 HOH A 237 837 455 HOH HOH . I 6 HOH A 238 838 368 HOH HOH . I 6 HOH A 239 839 225 HOH HOH . I 6 HOH A 240 840 228 HOH HOH . I 6 HOH A 241 841 417 HOH HOH . I 6 HOH A 242 842 407 HOH HOH . I 6 HOH A 243 843 16 HOH HOH . I 6 HOH A 244 844 280 HOH HOH . I 6 HOH A 245 845 470 HOH HOH . I 6 HOH A 246 846 169 HOH HOH . I 6 HOH A 247 847 357 HOH HOH . I 6 HOH A 248 848 463 HOH HOH . I 6 HOH A 249 849 452 HOH HOH . I 6 HOH A 250 850 389 HOH HOH . I 6 HOH A 251 851 430 HOH HOH . I 6 HOH A 252 852 437 HOH HOH . I 6 HOH A 253 853 411 HOH HOH . I 6 HOH A 254 854 404 HOH HOH . I 6 HOH A 255 855 398 HOH HOH . I 6 HOH A 256 856 182 HOH HOH . I 6 HOH A 257 857 286 HOH HOH . I 6 HOH A 258 858 361 HOH HOH . I 6 HOH A 259 859 139 HOH HOH . I 6 HOH A 260 860 97 HOH HOH . I 6 HOH A 261 861 243 HOH HOH . I 6 HOH A 262 862 207 HOH HOH . I 6 HOH A 263 863 240 HOH HOH . I 6 HOH A 264 864 287 HOH HOH . I 6 HOH A 265 865 291 HOH HOH . I 6 HOH A 266 866 316 HOH HOH . I 6 HOH A 267 867 431 HOH HOH . I 6 HOH A 268 868 136 HOH HOH . I 6 HOH A 269 869 474 HOH HOH . I 6 HOH A 270 870 245 HOH HOH . I 6 HOH A 271 871 239 HOH HOH . I 6 HOH A 272 872 416 HOH HOH . I 6 HOH A 273 873 268 HOH HOH . I 6 HOH A 274 874 382 HOH HOH . I 6 HOH A 275 875 362 HOH HOH . I 6 HOH A 276 876 360 HOH HOH . I 6 HOH A 277 877 223 HOH HOH . I 6 HOH A 278 878 444 HOH HOH . I 6 HOH A 279 879 446 HOH HOH . I 6 HOH A 280 880 211 HOH HOH . I 6 HOH A 281 881 390 HOH HOH . I 6 HOH A 282 882 358 HOH HOH . I 6 HOH A 283 883 250 HOH HOH . I 6 HOH A 284 884 460 HOH HOH . I 6 HOH A 285 885 258 HOH HOH . I 6 HOH A 286 886 375 HOH HOH . I 6 HOH A 287 887 351 HOH HOH . I 6 HOH A 288 888 189 HOH HOH . I 6 HOH A 289 889 369 HOH HOH . I 6 HOH A 290 890 304 HOH HOH . I 6 HOH A 291 891 464 HOH HOH . I 6 HOH A 292 892 406 HOH HOH . I 6 HOH A 293 893 412 HOH HOH . I 6 HOH A 294 894 364 HOH HOH . I 6 HOH A 295 895 194 HOH HOH . I 6 HOH A 296 896 331 HOH HOH . I 6 HOH A 297 897 230 HOH HOH . I 6 HOH A 298 898 363 HOH HOH . I 6 HOH A 299 899 405 HOH HOH . I 6 HOH A 300 900 279 HOH HOH . I 6 HOH A 301 901 378 HOH HOH . I 6 HOH A 302 902 175 HOH HOH . I 6 HOH A 303 903 162 HOH HOH . I 6 HOH A 304 904 443 HOH HOH . I 6 HOH A 305 905 188 HOH HOH . I 6 HOH A 306 906 376 HOH HOH . I 6 HOH A 307 907 365 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 3 25.764 -20.622 28.323 1 56.9 ? C1 GOL 507 A 1 HETATM 2 O O1 GOL . . . H 3 26.206 -21.971 28.436 1 60.56 ? O1 GOL 507 A 1 HETATM 3 C C2 GOL . . . H 3 26.857 -19.769 27.732 1 56.62 ? C2 GOL 507 A 1 HETATM 4 O O2 GOL . . . H 3 27.128 -20.235 26.415 1 64.7 ? O2 GOL 507 A 1 HETATM 5 C C3 GOL . . . H 3 26.541 -18.296 27.669 1 51.93 ? C3 GOL 507 A 1 HETATM 6 O O3 GOL . . . H 3 25.292 -18.059 27.037 1 53.32 ? O3 GOL 507 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #