data_8F4W # _model_server_result.job_id 1Il-TXopIwRd-Eb2k5kyog _model_server_result.datetime_utc '2024-11-27 12:35:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f4w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":511}' # _entry.id 8F4W # _exptl.entry_id 8F4W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8F4W _cell.length_a 175.008 _cell.length_b 175.008 _cell.length_c 124.366 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F4W _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 124.366 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 124.366 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 124.366 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 G N N ? 4 H N N ? 4 J N N ? 4 K N N ? 4 L N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 8F4W _atom_sites.fract_transf_matrix[1][1] 0.005714 _atom_sites.fract_transf_matrix[1][2] 0.003299 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006598 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008041 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VFX A 1 501 502 VFX VFX . C 3 DMS A 1 502 1 DMS DMS . D 4 GOL A 1 503 2 GOL GOL . E 4 GOL A 1 504 3 GOL GOL . F 5 PEG A 1 505 4 PEG PEG . G 4 GOL A 1 506 5 GOL GOL . H 4 GOL A 1 507 6 GOL GOL . I 5 PEG A 1 508 7 PEG PEG . J 4 GOL A 1 509 8 GOL GOL . K 4 GOL A 1 510 9 GOL GOL . L 4 GOL A 1 511 10 GOL GOL . M 6 HOH A 1 601 432 HOH HOH . M 6 HOH A 2 602 361 HOH HOH . M 6 HOH A 3 603 404 HOH HOH . M 6 HOH A 4 604 375 HOH HOH . M 6 HOH A 5 605 444 HOH HOH . M 6 HOH A 6 606 359 HOH HOH . M 6 HOH A 7 607 71 HOH HOH . M 6 HOH A 8 608 155 HOH HOH . M 6 HOH A 9 609 357 HOH HOH . M 6 HOH A 10 610 90 HOH HOH . M 6 HOH A 11 611 430 HOH HOH . M 6 HOH A 12 612 397 HOH HOH . M 6 HOH A 13 613 92 HOH HOH . M 6 HOH A 14 614 151 HOH HOH . M 6 HOH A 15 615 298 HOH HOH . M 6 HOH A 16 616 420 HOH HOH . M 6 HOH A 17 617 96 HOH HOH . M 6 HOH A 18 618 170 HOH HOH . M 6 HOH A 19 619 277 HOH HOH . M 6 HOH A 20 620 406 HOH HOH . M 6 HOH A 21 621 23 HOH HOH . M 6 HOH A 22 622 88 HOH HOH . M 6 HOH A 23 623 424 HOH HOH . M 6 HOH A 24 624 405 HOH HOH . M 6 HOH A 25 625 369 HOH HOH . M 6 HOH A 26 626 29 HOH HOH . M 6 HOH A 27 627 343 HOH HOH . M 6 HOH A 28 628 123 HOH HOH . M 6 HOH A 29 629 153 HOH HOH . M 6 HOH A 30 630 45 HOH HOH . M 6 HOH A 31 631 299 HOH HOH . M 6 HOH A 32 632 113 HOH HOH . M 6 HOH A 33 633 410 HOH HOH . M 6 HOH A 34 634 93 HOH HOH . M 6 HOH A 35 635 179 HOH HOH . M 6 HOH A 36 636 208 HOH HOH . M 6 HOH A 37 637 365 HOH HOH . M 6 HOH A 38 638 154 HOH HOH . M 6 HOH A 39 639 381 HOH HOH . M 6 HOH A 40 640 126 HOH HOH . M 6 HOH A 41 641 80 HOH HOH . M 6 HOH A 42 642 53 HOH HOH . M 6 HOH A 43 643 36 HOH HOH . M 6 HOH A 44 644 47 HOH HOH . M 6 HOH A 45 645 3 HOH HOH . M 6 HOH A 46 646 116 HOH HOH . M 6 HOH A 47 647 335 HOH HOH . M 6 HOH A 48 648 83 HOH HOH . M 6 HOH A 49 649 87 HOH HOH . M 6 HOH A 50 650 349 HOH HOH . M 6 HOH A 51 651 224 HOH HOH . M 6 HOH A 52 652 117 HOH HOH . M 6 HOH A 53 653 144 HOH HOH . M 6 HOH A 54 654 156 HOH HOH . M 6 HOH A 55 655 326 HOH HOH . M 6 HOH A 56 656 382 HOH HOH . M 6 HOH A 57 657 34 HOH HOH . M 6 HOH A 58 658 317 HOH HOH . M 6 HOH A 59 659 139 HOH HOH . M 6 HOH A 60 660 28 HOH HOH . M 6 HOH A 61 661 190 HOH HOH . M 6 HOH A 62 662 433 HOH HOH . M 6 HOH A 63 663 10 HOH HOH . M 6 HOH A 64 664 101 HOH HOH . M 6 HOH A 65 665 242 HOH HOH . M 6 HOH A 66 666 9 HOH HOH . M 6 HOH A 67 667 70 HOH HOH . M 6 HOH A 68 668 20 HOH HOH . M 6 HOH A 69 669 402 HOH HOH . M 6 HOH A 70 670 329 HOH HOH . M 6 HOH A 71 671 62 HOH HOH . M 6 HOH A 72 672 207 HOH HOH . M 6 HOH A 73 673 321 HOH HOH . M 6 HOH A 74 674 46 HOH HOH . M 6 HOH A 75 675 164 HOH HOH . M 6 HOH A 76 676 371 HOH HOH . M 6 HOH A 77 677 394 HOH HOH . M 6 HOH A 78 678 323 HOH HOH . M 6 HOH A 79 679 159 HOH HOH . M 6 HOH A 80 680 35 HOH HOH . M 6 HOH A 81 681 89 HOH HOH . M 6 HOH A 82 682 314 HOH HOH . M 6 HOH A 83 683 219 HOH HOH . M 6 HOH A 84 684 131 HOH HOH . M 6 HOH A 85 685 122 HOH HOH . M 6 HOH A 86 686 436 HOH HOH . M 6 HOH A 87 687 345 HOH HOH . M 6 HOH A 88 688 334 HOH HOH . M 6 HOH A 89 689 133 HOH HOH . M 6 HOH A 90 690 379 HOH HOH . M 6 HOH A 91 691 17 HOH HOH . M 6 HOH A 92 692 48 HOH HOH . M 6 HOH A 93 693 38 HOH HOH . M 6 HOH A 94 694 398 HOH HOH . M 6 HOH A 95 695 166 HOH HOH . M 6 HOH A 96 696 233 HOH HOH . M 6 HOH A 97 697 174 HOH HOH . M 6 HOH A 98 698 189 HOH HOH . M 6 HOH A 99 699 18 HOH HOH . M 6 HOH A 100 700 132 HOH HOH . M 6 HOH A 101 701 78 HOH HOH . M 6 HOH A 102 702 13 HOH HOH . M 6 HOH A 103 703 84 HOH HOH . M 6 HOH A 104 704 8 HOH HOH . M 6 HOH A 105 705 33 HOH HOH . M 6 HOH A 106 706 22 HOH HOH . M 6 HOH A 107 707 43 HOH HOH . M 6 HOH A 108 708 148 HOH HOH . M 6 HOH A 109 709 185 HOH HOH . M 6 HOH A 110 710 187 HOH HOH . M 6 HOH A 111 711 124 HOH HOH . M 6 HOH A 112 712 384 HOH HOH . M 6 HOH A 113 713 200 HOH HOH . M 6 HOH A 114 714 100 HOH HOH . M 6 HOH A 115 715 2 HOH HOH . M 6 HOH A 116 716 319 HOH HOH . M 6 HOH A 117 717 86 HOH HOH . M 6 HOH A 118 718 318 HOH HOH . M 6 HOH A 119 719 40 HOH HOH . M 6 HOH A 120 720 24 HOH HOH . M 6 HOH A 121 721 25 HOH HOH . M 6 HOH A 122 722 74 HOH HOH . M 6 HOH A 123 723 81 HOH HOH . M 6 HOH A 124 724 119 HOH HOH . M 6 HOH A 125 725 56 HOH HOH . M 6 HOH A 126 726 129 HOH HOH . M 6 HOH A 127 727 336 HOH HOH . M 6 HOH A 128 728 12 HOH HOH . M 6 HOH A 129 729 383 HOH HOH . M 6 HOH A 130 730 171 HOH HOH . M 6 HOH A 131 731 19 HOH HOH . M 6 HOH A 132 732 188 HOH HOH . M 6 HOH A 133 733 61 HOH HOH . M 6 HOH A 134 734 152 HOH HOH . M 6 HOH A 135 735 106 HOH HOH . M 6 HOH A 136 736 42 HOH HOH . M 6 HOH A 137 737 218 HOH HOH . M 6 HOH A 138 738 386 HOH HOH . M 6 HOH A 139 739 39 HOH HOH . M 6 HOH A 140 740 391 HOH HOH . M 6 HOH A 141 741 202 HOH HOH . M 6 HOH A 142 742 103 HOH HOH . M 6 HOH A 143 743 14 HOH HOH . M 6 HOH A 144 744 138 HOH HOH . M 6 HOH A 145 745 197 HOH HOH . M 6 HOH A 146 746 264 HOH HOH . M 6 HOH A 147 747 44 HOH HOH . M 6 HOH A 148 748 192 HOH HOH . M 6 HOH A 149 749 407 HOH HOH . M 6 HOH A 150 750 65 HOH HOH . M 6 HOH A 151 751 30 HOH HOH . M 6 HOH A 152 752 147 HOH HOH . M 6 HOH A 153 753 205 HOH HOH . M 6 HOH A 154 754 51 HOH HOH . M 6 HOH A 155 755 285 HOH HOH . M 6 HOH A 156 756 271 HOH HOH . M 6 HOH A 157 757 31 HOH HOH . M 6 HOH A 158 758 395 HOH HOH . M 6 HOH A 159 759 32 HOH HOH . M 6 HOH A 160 760 324 HOH HOH . M 6 HOH A 161 761 186 HOH HOH . M 6 HOH A 162 762 105 HOH HOH . M 6 HOH A 163 763 15 HOH HOH . M 6 HOH A 164 764 337 HOH HOH . M 6 HOH A 165 765 434 HOH HOH . M 6 HOH A 166 766 68 HOH HOH . M 6 HOH A 167 767 182 HOH HOH . M 6 HOH A 168 768 339 HOH HOH . M 6 HOH A 169 769 423 HOH HOH . M 6 HOH A 170 770 130 HOH HOH . M 6 HOH A 171 771 58 HOH HOH . M 6 HOH A 172 772 328 HOH HOH . M 6 HOH A 173 773 309 HOH HOH . M 6 HOH A 174 774 416 HOH HOH . M 6 HOH A 175 775 313 HOH HOH . M 6 HOH A 176 776 370 HOH HOH . M 6 HOH A 177 777 429 HOH HOH . M 6 HOH A 178 778 146 HOH HOH . M 6 HOH A 179 779 59 HOH HOH . M 6 HOH A 180 780 239 HOH HOH . M 6 HOH A 181 781 387 HOH HOH . M 6 HOH A 182 782 27 HOH HOH . M 6 HOH A 183 783 118 HOH HOH . M 6 HOH A 184 784 143 HOH HOH . M 6 HOH A 185 785 104 HOH HOH . M 6 HOH A 186 786 237 HOH HOH . M 6 HOH A 187 787 367 HOH HOH . M 6 HOH A 188 788 217 HOH HOH . M 6 HOH A 189 789 11 HOH HOH . M 6 HOH A 190 790 439 HOH HOH . M 6 HOH A 191 791 5 HOH HOH . M 6 HOH A 192 792 331 HOH HOH . M 6 HOH A 193 793 293 HOH HOH . M 6 HOH A 194 794 308 HOH HOH . M 6 HOH A 195 795 49 HOH HOH . M 6 HOH A 196 796 75 HOH HOH . M 6 HOH A 197 797 98 HOH HOH . M 6 HOH A 198 798 77 HOH HOH . M 6 HOH A 199 799 417 HOH HOH . M 6 HOH A 200 800 388 HOH HOH . M 6 HOH A 201 801 21 HOH HOH . M 6 HOH A 202 802 435 HOH HOH . M 6 HOH A 203 803 372 HOH HOH . M 6 HOH A 204 804 91 HOH HOH . M 6 HOH A 205 805 332 HOH HOH . M 6 HOH A 206 806 302 HOH HOH . M 6 HOH A 207 807 157 HOH HOH . M 6 HOH A 208 808 37 HOH HOH . M 6 HOH A 209 809 169 HOH HOH . M 6 HOH A 210 810 54 HOH HOH . M 6 HOH A 211 811 374 HOH HOH . M 6 HOH A 212 812 199 HOH HOH . M 6 HOH A 213 813 1 HOH HOH . M 6 HOH A 214 814 52 HOH HOH . M 6 HOH A 215 815 419 HOH HOH . M 6 HOH A 216 816 315 HOH HOH . M 6 HOH A 217 817 125 HOH HOH . M 6 HOH A 218 818 443 HOH HOH . M 6 HOH A 219 819 362 HOH HOH . M 6 HOH A 220 820 4 HOH HOH . M 6 HOH A 221 821 167 HOH HOH . M 6 HOH A 222 822 389 HOH HOH . M 6 HOH A 223 823 378 HOH HOH . M 6 HOH A 224 824 175 HOH HOH . M 6 HOH A 225 825 50 HOH HOH . M 6 HOH A 226 826 347 HOH HOH . M 6 HOH A 227 827 64 HOH HOH . M 6 HOH A 228 828 356 HOH HOH . M 6 HOH A 229 829 55 HOH HOH . M 6 HOH A 230 830 266 HOH HOH . M 6 HOH A 231 831 401 HOH HOH . M 6 HOH A 232 832 322 HOH HOH . M 6 HOH A 233 833 342 HOH HOH . M 6 HOH A 234 834 373 HOH HOH . M 6 HOH A 235 835 380 HOH HOH . M 6 HOH A 236 836 428 HOH HOH . M 6 HOH A 237 837 181 HOH HOH . M 6 HOH A 238 838 127 HOH HOH . M 6 HOH A 239 839 57 HOH HOH . M 6 HOH A 240 840 330 HOH HOH . M 6 HOH A 241 841 363 HOH HOH . M 6 HOH A 242 842 7 HOH HOH . M 6 HOH A 243 843 385 HOH HOH . M 6 HOH A 244 844 437 HOH HOH . M 6 HOH A 245 845 163 HOH HOH . M 6 HOH A 246 846 390 HOH HOH . M 6 HOH A 247 847 320 HOH HOH . M 6 HOH A 248 848 442 HOH HOH . M 6 HOH A 249 849 376 HOH HOH . M 6 HOH A 250 850 421 HOH HOH . M 6 HOH A 251 851 295 HOH HOH . M 6 HOH A 252 852 396 HOH HOH . M 6 HOH A 253 853 340 HOH HOH . M 6 HOH A 254 854 441 HOH HOH . M 6 HOH A 255 855 426 HOH HOH . M 6 HOH A 256 856 60 HOH HOH . M 6 HOH A 257 857 296 HOH HOH . M 6 HOH A 258 858 408 HOH HOH . M 6 HOH A 259 859 294 HOH HOH . M 6 HOH A 260 860 352 HOH HOH . M 6 HOH A 261 861 431 HOH HOH . M 6 HOH A 262 862 304 HOH HOH . M 6 HOH A 263 863 216 HOH HOH . M 6 HOH A 264 864 229 HOH HOH . M 6 HOH A 265 865 412 HOH HOH . M 6 HOH A 266 866 392 HOH HOH . M 6 HOH A 267 867 360 HOH HOH . M 6 HOH A 268 868 260 HOH HOH . M 6 HOH A 269 869 418 HOH HOH . M 6 HOH A 270 870 425 HOH HOH . M 6 HOH A 271 871 427 HOH HOH . M 6 HOH A 272 872 206 HOH HOH . M 6 HOH A 273 873 411 HOH HOH . M 6 HOH A 274 874 413 HOH HOH . M 6 HOH A 275 875 338 HOH HOH . M 6 HOH A 276 876 214 HOH HOH . M 6 HOH A 277 877 79 HOH HOH . M 6 HOH A 278 878 377 HOH HOH . M 6 HOH A 279 879 333 HOH HOH . M 6 HOH A 280 880 364 HOH HOH . M 6 HOH A 281 881 191 HOH HOH . M 6 HOH A 282 882 184 HOH HOH . M 6 HOH A 283 883 358 HOH HOH . M 6 HOH A 284 884 409 HOH HOH . M 6 HOH A 285 885 346 HOH HOH . M 6 HOH A 286 886 399 HOH HOH . M 6 HOH A 287 887 168 HOH HOH . M 6 HOH A 288 888 311 HOH HOH . M 6 HOH A 289 889 236 HOH HOH . M 6 HOH A 290 890 16 HOH HOH . M 6 HOH A 291 891 440 HOH HOH . M 6 HOH A 292 892 351 HOH HOH . M 6 HOH A 293 893 136 HOH HOH . M 6 HOH A 294 894 422 HOH HOH . M 6 HOH A 295 895 393 HOH HOH . M 6 HOH A 296 896 41 HOH HOH . M 6 HOH A 297 897 354 HOH HOH . M 6 HOH A 298 898 400 HOH HOH . M 6 HOH A 299 899 350 HOH HOH . M 6 HOH A 300 900 415 HOH HOH . M 6 HOH A 301 901 438 HOH HOH . M 6 HOH A 302 902 414 HOH HOH . M 6 HOH A 303 903 403 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 4 45.617 -22.825 67.447 1 53.55 ? C1 GOL 511 A 1 HETATM 2 O O1 GOL . . . L 4 44.963 -21.965 68.387 1 51.74 ? O1 GOL 511 A 1 HETATM 3 C C2 GOL . . . L 4 46.552 -22.062 66.522 1 52.59 ? C2 GOL 511 A 1 HETATM 4 O O2 GOL . . . L 4 47.905 -22.141 66.994 1 52.44 ? O2 GOL 511 A 1 HETATM 5 C C3 GOL . . . L 4 46.514 -22.568 65.092 1 51.09 ? C3 GOL 511 A 1 HETATM 6 O O3 GOL . . . L 4 46.607 -24 65.03 1 57.01 ? O3 GOL 511 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #