data_8F51 # _model_server_result.job_id SDXaFBYW4k0jEEZJKIeYww _model_server_result.datetime_utc '2024-10-15 03:23:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f51 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 8F51 # _exptl.entry_id 8F51 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8F51 _cell.length_a 175.313 _cell.length_b 175.313 _cell.length_c 123.308 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F51 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 123.308 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 123.308 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 123.308 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 8F51 _atom_sites.fract_transf_matrix[1][1] 0.005704 _atom_sites.fract_transf_matrix[1][2] 0.003293 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006587 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00811 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YMZ A 1 501 502 YMZ MFQ . C 3 DMS A 1 502 1 DMS DMS . D 4 PEG A 1 503 2 PEG PEG . E 4 PEG A 1 504 3 PEG PEG . F 5 GOL A 1 505 4 GOL GOL . G 5 GOL A 1 506 5 GOL GOL . H 5 GOL A 1 507 6 GOL GOL . I 6 HOH A 1 601 13 HOH HOH . I 6 HOH A 2 602 262 HOH HOH . I 6 HOH A 3 603 97 HOH HOH . I 6 HOH A 4 604 355 HOH HOH . I 6 HOH A 5 605 412 HOH HOH . I 6 HOH A 6 606 5 HOH HOH . I 6 HOH A 7 607 4 HOH HOH . I 6 HOH A 8 608 64 HOH HOH . I 6 HOH A 9 609 301 HOH HOH . I 6 HOH A 10 610 25 HOH HOH . I 6 HOH A 11 611 321 HOH HOH . I 6 HOH A 12 612 98 HOH HOH . I 6 HOH A 13 613 22 HOH HOH . I 6 HOH A 14 614 96 HOH HOH . I 6 HOH A 15 615 451 HOH HOH . I 6 HOH A 16 616 184 HOH HOH . I 6 HOH A 17 617 67 HOH HOH . I 6 HOH A 18 618 42 HOH HOH . I 6 HOH A 19 619 444 HOH HOH . I 6 HOH A 20 620 20 HOH HOH . I 6 HOH A 21 621 63 HOH HOH . I 6 HOH A 22 622 345 HOH HOH . I 6 HOH A 23 623 33 HOH HOH . I 6 HOH A 24 624 404 HOH HOH . I 6 HOH A 25 625 29 HOH HOH . I 6 HOH A 26 626 120 HOH HOH . I 6 HOH A 27 627 289 HOH HOH . I 6 HOH A 28 628 313 HOH HOH . I 6 HOH A 29 629 350 HOH HOH . I 6 HOH A 30 630 3 HOH HOH . I 6 HOH A 31 631 100 HOH HOH . I 6 HOH A 32 632 255 HOH HOH . I 6 HOH A 33 633 86 HOH HOH . I 6 HOH A 34 634 259 HOH HOH . I 6 HOH A 35 635 267 HOH HOH . I 6 HOH A 36 636 286 HOH HOH . I 6 HOH A 37 637 124 HOH HOH . I 6 HOH A 38 638 304 HOH HOH . I 6 HOH A 39 639 282 HOH HOH . I 6 HOH A 40 640 323 HOH HOH . I 6 HOH A 41 641 258 HOH HOH . I 6 HOH A 42 642 62 HOH HOH . I 6 HOH A 43 643 306 HOH HOH . I 6 HOH A 44 644 276 HOH HOH . I 6 HOH A 45 645 340 HOH HOH . I 6 HOH A 46 646 16 HOH HOH . I 6 HOH A 47 647 88 HOH HOH . I 6 HOH A 48 648 215 HOH HOH . I 6 HOH A 49 649 58 HOH HOH . I 6 HOH A 50 650 9 HOH HOH . I 6 HOH A 51 651 318 HOH HOH . I 6 HOH A 52 652 27 HOH HOH . I 6 HOH A 53 653 15 HOH HOH . I 6 HOH A 54 654 450 HOH HOH . I 6 HOH A 55 655 314 HOH HOH . I 6 HOH A 56 656 273 HOH HOH . I 6 HOH A 57 657 55 HOH HOH . I 6 HOH A 58 658 69 HOH HOH . I 6 HOH A 59 659 11 HOH HOH . I 6 HOH A 60 660 85 HOH HOH . I 6 HOH A 61 661 60 HOH HOH . I 6 HOH A 62 662 332 HOH HOH . I 6 HOH A 63 663 266 HOH HOH . I 6 HOH A 64 664 416 HOH HOH . I 6 HOH A 65 665 32 HOH HOH . I 6 HOH A 66 666 302 HOH HOH . I 6 HOH A 67 667 14 HOH HOH . I 6 HOH A 68 668 347 HOH HOH . I 6 HOH A 69 669 163 HOH HOH . I 6 HOH A 70 670 79 HOH HOH . I 6 HOH A 71 671 23 HOH HOH . I 6 HOH A 72 672 300 HOH HOH . I 6 HOH A 73 673 428 HOH HOH . I 6 HOH A 74 674 118 HOH HOH . I 6 HOH A 75 675 161 HOH HOH . I 6 HOH A 76 676 8 HOH HOH . I 6 HOH A 77 677 401 HOH HOH . I 6 HOH A 78 678 278 HOH HOH . I 6 HOH A 79 679 280 HOH HOH . I 6 HOH A 80 680 168 HOH HOH . I 6 HOH A 81 681 443 HOH HOH . I 6 HOH A 82 682 65 HOH HOH . I 6 HOH A 83 683 7 HOH HOH . I 6 HOH A 84 684 61 HOH HOH . I 6 HOH A 85 685 107 HOH HOH . I 6 HOH A 86 686 336 HOH HOH . I 6 HOH A 87 687 297 HOH HOH . I 6 HOH A 88 688 30 HOH HOH . I 6 HOH A 89 689 48 HOH HOH . I 6 HOH A 90 690 153 HOH HOH . I 6 HOH A 91 691 152 HOH HOH . I 6 HOH A 92 692 50 HOH HOH . I 6 HOH A 93 693 410 HOH HOH . I 6 HOH A 94 694 349 HOH HOH . I 6 HOH A 95 695 309 HOH HOH . I 6 HOH A 96 696 402 HOH HOH . I 6 HOH A 97 697 405 HOH HOH . I 6 HOH A 98 698 12 HOH HOH . I 6 HOH A 99 699 10 HOH HOH . I 6 HOH A 100 700 129 HOH HOH . I 6 HOH A 101 701 26 HOH HOH . I 6 HOH A 102 702 327 HOH HOH . I 6 HOH A 103 703 46 HOH HOH . I 6 HOH A 104 704 326 HOH HOH . I 6 HOH A 105 705 91 HOH HOH . I 6 HOH A 106 706 101 HOH HOH . I 6 HOH A 107 707 357 HOH HOH . I 6 HOH A 108 708 81 HOH HOH . I 6 HOH A 109 709 272 HOH HOH . I 6 HOH A 110 710 436 HOH HOH . I 6 HOH A 111 711 305 HOH HOH . I 6 HOH A 112 712 333 HOH HOH . I 6 HOH A 113 713 70 HOH HOH . I 6 HOH A 114 714 320 HOH HOH . I 6 HOH A 115 715 138 HOH HOH . I 6 HOH A 116 716 170 HOH HOH . I 6 HOH A 117 717 265 HOH HOH . I 6 HOH A 118 718 281 HOH HOH . I 6 HOH A 119 719 429 HOH HOH . I 6 HOH A 120 720 114 HOH HOH . I 6 HOH A 121 721 312 HOH HOH . I 6 HOH A 122 722 206 HOH HOH . I 6 HOH A 123 723 311 HOH HOH . I 6 HOH A 124 724 49 HOH HOH . I 6 HOH A 125 725 223 HOH HOH . I 6 HOH A 126 726 56 HOH HOH . I 6 HOH A 127 727 6 HOH HOH . I 6 HOH A 128 728 423 HOH HOH . I 6 HOH A 129 729 293 HOH HOH . I 6 HOH A 130 730 189 HOH HOH . I 6 HOH A 131 731 57 HOH HOH . I 6 HOH A 132 732 275 HOH HOH . I 6 HOH A 133 733 59 HOH HOH . I 6 HOH A 134 734 453 HOH HOH . I 6 HOH A 135 735 112 HOH HOH . I 6 HOH A 136 736 199 HOH HOH . I 6 HOH A 137 737 119 HOH HOH . I 6 HOH A 138 738 310 HOH HOH . I 6 HOH A 139 739 122 HOH HOH . I 6 HOH A 140 740 346 HOH HOH . I 6 HOH A 141 741 116 HOH HOH . I 6 HOH A 142 742 28 HOH HOH . I 6 HOH A 143 743 248 HOH HOH . I 6 HOH A 144 744 54 HOH HOH . I 6 HOH A 145 745 155 HOH HOH . I 6 HOH A 146 746 439 HOH HOH . I 6 HOH A 147 747 415 HOH HOH . I 6 HOH A 148 748 66 HOH HOH . I 6 HOH A 149 749 319 HOH HOH . I 6 HOH A 150 750 19 HOH HOH . I 6 HOH A 151 751 322 HOH HOH . I 6 HOH A 152 752 208 HOH HOH . I 6 HOH A 153 753 339 HOH HOH . I 6 HOH A 154 754 352 HOH HOH . I 6 HOH A 155 755 317 HOH HOH . I 6 HOH A 156 756 147 HOH HOH . I 6 HOH A 157 757 403 HOH HOH . I 6 HOH A 158 758 39 HOH HOH . I 6 HOH A 159 759 341 HOH HOH . I 6 HOH A 160 760 90 HOH HOH . I 6 HOH A 161 761 325 HOH HOH . I 6 HOH A 162 762 424 HOH HOH . I 6 HOH A 163 763 342 HOH HOH . I 6 HOH A 164 764 287 HOH HOH . I 6 HOH A 165 765 40 HOH HOH . I 6 HOH A 166 766 102 HOH HOH . I 6 HOH A 167 767 354 HOH HOH . I 6 HOH A 168 768 264 HOH HOH . I 6 HOH A 169 769 407 HOH HOH . I 6 HOH A 170 770 35 HOH HOH . I 6 HOH A 171 771 263 HOH HOH . I 6 HOH A 172 772 406 HOH HOH . I 6 HOH A 173 773 400 HOH HOH . I 6 HOH A 174 774 284 HOH HOH . I 6 HOH A 175 775 438 HOH HOH . I 6 HOH A 176 776 78 HOH HOH . I 6 HOH A 177 777 421 HOH HOH . I 6 HOH A 178 778 316 HOH HOH . I 6 HOH A 179 779 356 HOH HOH . I 6 HOH A 180 780 93 HOH HOH . I 6 HOH A 181 781 277 HOH HOH . I 6 HOH A 182 782 427 HOH HOH . I 6 HOH A 183 783 1 HOH HOH . I 6 HOH A 184 784 84 HOH HOH . I 6 HOH A 185 785 413 HOH HOH . I 6 HOH A 186 786 324 HOH HOH . I 6 HOH A 187 787 172 HOH HOH . I 6 HOH A 188 788 45 HOH HOH . I 6 HOH A 189 789 126 HOH HOH . I 6 HOH A 190 790 337 HOH HOH . I 6 HOH A 191 791 446 HOH HOH . I 6 HOH A 192 792 121 HOH HOH . I 6 HOH A 193 793 409 HOH HOH . I 6 HOH A 194 794 2 HOH HOH . I 6 HOH A 195 795 271 HOH HOH . I 6 HOH A 196 796 330 HOH HOH . I 6 HOH A 197 797 104 HOH HOH . I 6 HOH A 198 798 44 HOH HOH . I 6 HOH A 199 799 143 HOH HOH . I 6 HOH A 200 800 445 HOH HOH . I 6 HOH A 201 801 432 HOH HOH . I 6 HOH A 202 802 141 HOH HOH . I 6 HOH A 203 803 411 HOH HOH . I 6 HOH A 204 804 77 HOH HOH . I 6 HOH A 205 805 295 HOH HOH . I 6 HOH A 206 806 334 HOH HOH . I 6 HOH A 207 807 292 HOH HOH . I 6 HOH A 208 808 452 HOH HOH . I 6 HOH A 209 809 213 HOH HOH . I 6 HOH A 210 810 167 HOH HOH . I 6 HOH A 211 811 408 HOH HOH . I 6 HOH A 212 812 279 HOH HOH . I 6 HOH A 213 813 331 HOH HOH . I 6 HOH A 214 814 291 HOH HOH . I 6 HOH A 215 815 433 HOH HOH . I 6 HOH A 216 816 17 HOH HOH . I 6 HOH A 217 817 298 HOH HOH . I 6 HOH A 218 818 335 HOH HOH . I 6 HOH A 219 819 251 HOH HOH . I 6 HOH A 220 820 420 HOH HOH . I 6 HOH A 221 821 425 HOH HOH . I 6 HOH A 222 822 274 HOH HOH . I 6 HOH A 223 823 417 HOH HOH . I 6 HOH A 224 824 290 HOH HOH . I 6 HOH A 225 825 435 HOH HOH . I 6 HOH A 226 826 440 HOH HOH . I 6 HOH A 227 827 329 HOH HOH . I 6 HOH A 228 828 307 HOH HOH . I 6 HOH A 229 829 348 HOH HOH . I 6 HOH A 230 830 419 HOH HOH . I 6 HOH A 231 831 431 HOH HOH . I 6 HOH A 232 832 426 HOH HOH . I 6 HOH A 233 833 288 HOH HOH . I 6 HOH A 234 834 448 HOH HOH . I 6 HOH A 235 835 414 HOH HOH . I 6 HOH A 236 836 338 HOH HOH . I 6 HOH A 237 837 422 HOH HOH . I 6 HOH A 238 838 442 HOH HOH . I 6 HOH A 239 839 434 HOH HOH . I 6 HOH A 240 840 308 HOH HOH . I 6 HOH A 241 841 447 HOH HOH . I 6 HOH A 242 842 246 HOH HOH . I 6 HOH A 243 843 285 HOH HOH . I 6 HOH A 244 844 441 HOH HOH . I 6 HOH A 245 845 353 HOH HOH . I 6 HOH A 246 846 430 HOH HOH . I 6 HOH A 247 847 328 HOH HOH . I 6 HOH A 248 848 449 HOH HOH . I 6 HOH A 249 849 315 HOH HOH . I 6 HOH A 250 850 196 HOH HOH . I 6 HOH A 251 851 418 HOH HOH . I 6 HOH A 252 852 437 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 5 39.095 -24.565 45.377 1 71.04 ? C1 GOL 507 A 1 HETATM 2 O O1 GOL . . . H 5 38.961 -23.682 44.265 1 60.5 ? O1 GOL 507 A 1 HETATM 3 C C2 GOL . . . H 5 38.141 -25.75 45.323 1 71.81 ? C2 GOL 507 A 1 HETATM 4 O O2 GOL . . . H 5 37.651 -26.025 46.637 1 65.73 ? O2 GOL 507 A 1 HETATM 5 C C3 GOL . . . H 5 36.955 -25.58 44.386 1 70.41 ? C3 GOL 507 A 1 HETATM 6 O O3 GOL . . . H 5 37.149 -26.205 43.116 1 62.37 ? O3 GOL 507 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 39 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 579 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #