data_8F55 # _model_server_result.job_id 3477GH9m47rUx_DZiGpA_Q _model_server_result.datetime_utc '2024-10-15 05:18:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f55 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":509}' # _entry.id 8F55 # _exptl.entry_id 8F55 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8F55 _cell.length_a 175.279 _cell.length_b 175.279 _cell.length_c 123.406 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F55 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 123.406 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 123.406 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 123.406 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N ? 3 J N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 8F55 _atom_sites.fract_transf_matrix[1][1] 0.005705 _atom_sites.fract_transf_matrix[1][2] 0.003294 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006588 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008103 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XF2 A 1 501 501 XF2 270 . C 3 DMS A 1 502 502 DMS DMS . D 3 DMS A 1 503 503 DMS DMS . E 3 DMS A 1 504 504 DMS DMS . F 3 DMS A 1 505 505 DMS DMS . G 4 GOL A 1 506 506 GOL GOL . H 3 DMS A 1 507 507 DMS DMS . I 3 DMS A 1 508 508 DMS DMS . J 3 DMS A 1 509 509 DMS DMS . K 4 GOL A 1 510 14 GOL GOL . L 4 GOL A 1 511 15 GOL GOL . M 5 PEG A 1 512 17 PEG PEG . N 6 HOH A 1 601 85 HOH HOH . N 6 HOH A 2 602 414 HOH HOH . N 6 HOH A 3 603 428 HOH HOH . N 6 HOH A 4 604 480 HOH HOH . N 6 HOH A 5 605 418 HOH HOH . N 6 HOH A 6 606 159 HOH HOH . N 6 HOH A 7 607 477 HOH HOH . N 6 HOH A 8 608 33 HOH HOH . N 6 HOH A 9 609 148 HOH HOH . N 6 HOH A 10 610 479 HOH HOH . N 6 HOH A 11 611 62 HOH HOH . N 6 HOH A 12 612 423 HOH HOH . N 6 HOH A 13 613 34 HOH HOH . N 6 HOH A 14 614 113 HOH HOH . N 6 HOH A 15 615 432 HOH HOH . N 6 HOH A 16 616 493 HOH HOH . N 6 HOH A 17 617 468 HOH HOH . N 6 HOH A 18 618 489 HOH HOH . N 6 HOH A 19 619 243 HOH HOH . N 6 HOH A 20 620 52 HOH HOH . N 6 HOH A 21 621 165 HOH HOH . N 6 HOH A 22 622 449 HOH HOH . N 6 HOH A 23 623 53 HOH HOH . N 6 HOH A 24 624 47 HOH HOH . N 6 HOH A 25 625 134 HOH HOH . N 6 HOH A 26 626 15 HOH HOH . N 6 HOH A 27 627 35 HOH HOH . N 6 HOH A 28 628 366 HOH HOH . N 6 HOH A 29 629 114 HOH HOH . N 6 HOH A 30 630 140 HOH HOH . N 6 HOH A 31 631 422 HOH HOH . N 6 HOH A 32 632 224 HOH HOH . N 6 HOH A 33 633 421 HOH HOH . N 6 HOH A 34 634 129 HOH HOH . N 6 HOH A 35 635 42 HOH HOH . N 6 HOH A 36 636 6 HOH HOH . N 6 HOH A 37 637 400 HOH HOH . N 6 HOH A 38 638 56 HOH HOH . N 6 HOH A 39 639 270 HOH HOH . N 6 HOH A 40 640 41 HOH HOH . N 6 HOH A 41 641 17 HOH HOH . N 6 HOH A 42 642 111 HOH HOH . N 6 HOH A 43 643 439 HOH HOH . N 6 HOH A 44 644 84 HOH HOH . N 6 HOH A 45 645 126 HOH HOH . N 6 HOH A 46 646 202 HOH HOH . N 6 HOH A 47 647 18 HOH HOH . N 6 HOH A 48 648 128 HOH HOH . N 6 HOH A 49 649 191 HOH HOH . N 6 HOH A 50 650 153 HOH HOH . N 6 HOH A 51 651 119 HOH HOH . N 6 HOH A 52 652 105 HOH HOH . N 6 HOH A 53 653 24 HOH HOH . N 6 HOH A 54 654 160 HOH HOH . N 6 HOH A 55 655 73 HOH HOH . N 6 HOH A 56 656 133 HOH HOH . N 6 HOH A 57 657 72 HOH HOH . N 6 HOH A 58 658 438 HOH HOH . N 6 HOH A 59 659 99 HOH HOH . N 6 HOH A 60 660 31 HOH HOH . N 6 HOH A 61 661 409 HOH HOH . N 6 HOH A 62 662 59 HOH HOH . N 6 HOH A 63 663 29 HOH HOH . N 6 HOH A 64 664 102 HOH HOH . N 6 HOH A 65 665 296 HOH HOH . N 6 HOH A 66 666 483 HOH HOH . N 6 HOH A 67 667 117 HOH HOH . N 6 HOH A 68 668 8 HOH HOH . N 6 HOH A 69 669 37 HOH HOH . N 6 HOH A 70 670 68 HOH HOH . N 6 HOH A 71 671 490 HOH HOH . N 6 HOH A 72 672 424 HOH HOH . N 6 HOH A 73 673 71 HOH HOH . N 6 HOH A 74 674 1 HOH HOH . N 6 HOH A 75 675 118 HOH HOH . N 6 HOH A 76 676 104 HOH HOH . N 6 HOH A 77 677 86 HOH HOH . N 6 HOH A 78 678 482 HOH HOH . N 6 HOH A 79 679 66 HOH HOH . N 6 HOH A 80 680 131 HOH HOH . N 6 HOH A 81 681 106 HOH HOH . N 6 HOH A 82 682 60 HOH HOH . N 6 HOH A 83 683 32 HOH HOH . N 6 HOH A 84 684 505 HOH HOH . N 6 HOH A 85 685 22 HOH HOH . N 6 HOH A 86 686 209 HOH HOH . N 6 HOH A 87 687 20 HOH HOH . N 6 HOH A 88 688 492 HOH HOH . N 6 HOH A 89 689 425 HOH HOH . N 6 HOH A 90 690 410 HOH HOH . N 6 HOH A 91 691 183 HOH HOH . N 6 HOH A 92 692 19 HOH HOH . N 6 HOH A 93 693 151 HOH HOH . N 6 HOH A 94 694 115 HOH HOH . N 6 HOH A 95 695 462 HOH HOH . N 6 HOH A 96 696 25 HOH HOH . N 6 HOH A 97 697 120 HOH HOH . N 6 HOH A 98 698 152 HOH HOH . N 6 HOH A 99 699 420 HOH HOH . N 6 HOH A 100 700 38 HOH HOH . N 6 HOH A 101 701 109 HOH HOH . N 6 HOH A 102 702 88 HOH HOH . N 6 HOH A 103 703 408 HOH HOH . N 6 HOH A 104 704 90 HOH HOH . N 6 HOH A 105 705 471 HOH HOH . N 6 HOH A 106 706 36 HOH HOH . N 6 HOH A 107 707 4 HOH HOH . N 6 HOH A 108 708 503 HOH HOH . N 6 HOH A 109 709 240 HOH HOH . N 6 HOH A 110 710 81 HOH HOH . N 6 HOH A 111 711 89 HOH HOH . N 6 HOH A 112 712 403 HOH HOH . N 6 HOH A 113 713 484 HOH HOH . N 6 HOH A 114 714 11 HOH HOH . N 6 HOH A 115 715 257 HOH HOH . N 6 HOH A 116 716 3 HOH HOH . N 6 HOH A 117 717 49 HOH HOH . N 6 HOH A 118 718 116 HOH HOH . N 6 HOH A 119 719 184 HOH HOH . N 6 HOH A 120 720 170 HOH HOH . N 6 HOH A 121 721 46 HOH HOH . N 6 HOH A 122 722 427 HOH HOH . N 6 HOH A 123 723 51 HOH HOH . N 6 HOH A 124 724 486 HOH HOH . N 6 HOH A 125 725 82 HOH HOH . N 6 HOH A 126 726 442 HOH HOH . N 6 HOH A 127 727 93 HOH HOH . N 6 HOH A 128 728 501 HOH HOH . N 6 HOH A 129 729 75 HOH HOH . N 6 HOH A 130 730 67 HOH HOH . N 6 HOH A 131 731 426 HOH HOH . N 6 HOH A 132 732 455 HOH HOH . N 6 HOH A 133 733 498 HOH HOH . N 6 HOH A 134 734 478 HOH HOH . N 6 HOH A 135 735 55 HOH HOH . N 6 HOH A 136 736 155 HOH HOH . N 6 HOH A 137 737 39 HOH HOH . N 6 HOH A 138 738 199 HOH HOH . N 6 HOH A 139 739 69 HOH HOH . N 6 HOH A 140 740 14 HOH HOH . N 6 HOH A 141 741 244 HOH HOH . N 6 HOH A 142 742 373 HOH HOH . N 6 HOH A 143 743 122 HOH HOH . N 6 HOH A 144 744 419 HOH HOH . N 6 HOH A 145 745 150 HOH HOH . N 6 HOH A 146 746 402 HOH HOH . N 6 HOH A 147 747 13 HOH HOH . N 6 HOH A 148 748 488 HOH HOH . N 6 HOH A 149 749 508 HOH HOH . N 6 HOH A 150 750 185 HOH HOH . N 6 HOH A 151 751 368 HOH HOH . N 6 HOH A 152 752 132 HOH HOH . N 6 HOH A 153 753 40 HOH HOH . N 6 HOH A 154 754 5 HOH HOH . N 6 HOH A 155 755 231 HOH HOH . N 6 HOH A 156 756 83 HOH HOH . N 6 HOH A 157 757 450 HOH HOH . N 6 HOH A 158 758 65 HOH HOH . N 6 HOH A 159 759 158 HOH HOH . N 6 HOH A 160 760 476 HOH HOH . N 6 HOH A 161 761 143 HOH HOH . N 6 HOH A 162 762 506 HOH HOH . N 6 HOH A 163 763 124 HOH HOH . N 6 HOH A 164 764 252 HOH HOH . N 6 HOH A 165 765 445 HOH HOH . N 6 HOH A 166 766 12 HOH HOH . N 6 HOH A 167 767 495 HOH HOH . N 6 HOH A 168 768 157 HOH HOH . N 6 HOH A 169 769 204 HOH HOH . N 6 HOH A 170 770 103 HOH HOH . N 6 HOH A 171 771 45 HOH HOH . N 6 HOH A 172 772 100 HOH HOH . N 6 HOH A 173 773 57 HOH HOH . N 6 HOH A 174 774 95 HOH HOH . N 6 HOH A 175 775 466 HOH HOH . N 6 HOH A 176 776 173 HOH HOH . N 6 HOH A 177 777 453 HOH HOH . N 6 HOH A 178 778 475 HOH HOH . N 6 HOH A 179 779 144 HOH HOH . N 6 HOH A 180 780 212 HOH HOH . N 6 HOH A 181 781 190 HOH HOH . N 6 HOH A 182 782 473 HOH HOH . N 6 HOH A 183 783 225 HOH HOH . N 6 HOH A 184 784 465 HOH HOH . N 6 HOH A 185 785 248 HOH HOH . N 6 HOH A 186 786 27 HOH HOH . N 6 HOH A 187 787 469 HOH HOH . N 6 HOH A 188 788 429 HOH HOH . N 6 HOH A 189 789 440 HOH HOH . N 6 HOH A 190 790 23 HOH HOH . N 6 HOH A 191 791 87 HOH HOH . N 6 HOH A 192 792 163 HOH HOH . N 6 HOH A 193 793 48 HOH HOH . N 6 HOH A 194 794 141 HOH HOH . N 6 HOH A 195 795 127 HOH HOH . N 6 HOH A 196 796 313 HOH HOH . N 6 HOH A 197 797 326 HOH HOH . N 6 HOH A 198 798 178 HOH HOH . N 6 HOH A 199 799 485 HOH HOH . N 6 HOH A 200 800 474 HOH HOH . N 6 HOH A 201 801 138 HOH HOH . N 6 HOH A 202 802 44 HOH HOH . N 6 HOH A 203 803 171 HOH HOH . N 6 HOH A 204 804 123 HOH HOH . N 6 HOH A 205 805 121 HOH HOH . N 6 HOH A 206 806 161 HOH HOH . N 6 HOH A 207 807 26 HOH HOH . N 6 HOH A 208 808 169 HOH HOH . N 6 HOH A 209 809 2 HOH HOH . N 6 HOH A 210 810 30 HOH HOH . N 6 HOH A 211 811 130 HOH HOH . N 6 HOH A 212 812 470 HOH HOH . N 6 HOH A 213 813 79 HOH HOH . N 6 HOH A 214 814 166 HOH HOH . N 6 HOH A 215 815 101 HOH HOH . N 6 HOH A 216 816 58 HOH HOH . N 6 HOH A 217 817 472 HOH HOH . N 6 HOH A 218 818 9 HOH HOH . N 6 HOH A 219 819 76 HOH HOH . N 6 HOH A 220 820 435 HOH HOH . N 6 HOH A 221 821 331 HOH HOH . N 6 HOH A 222 822 401 HOH HOH . N 6 HOH A 223 823 286 HOH HOH . N 6 HOH A 224 824 7 HOH HOH . N 6 HOH A 225 825 107 HOH HOH . N 6 HOH A 226 826 496 HOH HOH . N 6 HOH A 227 827 247 HOH HOH . N 6 HOH A 228 828 500 HOH HOH . N 6 HOH A 229 829 110 HOH HOH . N 6 HOH A 230 830 436 HOH HOH . N 6 HOH A 231 831 214 HOH HOH . N 6 HOH A 232 832 316 HOH HOH . N 6 HOH A 233 833 228 HOH HOH . N 6 HOH A 234 834 197 HOH HOH . N 6 HOH A 235 835 463 HOH HOH . N 6 HOH A 236 836 201 HOH HOH . N 6 HOH A 237 837 80 HOH HOH . N 6 HOH A 238 838 108 HOH HOH . N 6 HOH A 239 839 417 HOH HOH . N 6 HOH A 240 840 16 HOH HOH . N 6 HOH A 241 841 431 HOH HOH . N 6 HOH A 242 842 452 HOH HOH . N 6 HOH A 243 843 357 HOH HOH . N 6 HOH A 244 844 457 HOH HOH . N 6 HOH A 245 845 433 HOH HOH . N 6 HOH A 246 846 320 HOH HOH . N 6 HOH A 247 847 97 HOH HOH . N 6 HOH A 248 848 136 HOH HOH . N 6 HOH A 249 849 63 HOH HOH . N 6 HOH A 250 850 211 HOH HOH . N 6 HOH A 251 851 411 HOH HOH . N 6 HOH A 252 852 494 HOH HOH . N 6 HOH A 253 853 182 HOH HOH . N 6 HOH A 254 854 507 HOH HOH . N 6 HOH A 255 855 28 HOH HOH . N 6 HOH A 256 856 287 HOH HOH . N 6 HOH A 257 857 416 HOH HOH . N 6 HOH A 258 858 415 HOH HOH . N 6 HOH A 259 859 437 HOH HOH . N 6 HOH A 260 860 360 HOH HOH . N 6 HOH A 261 861 444 HOH HOH . N 6 HOH A 262 862 404 HOH HOH . N 6 HOH A 263 863 491 HOH HOH . N 6 HOH A 264 864 245 HOH HOH . N 6 HOH A 265 865 239 HOH HOH . N 6 HOH A 266 866 382 HOH HOH . N 6 HOH A 267 867 139 HOH HOH . N 6 HOH A 268 868 351 HOH HOH . N 6 HOH A 269 869 189 HOH HOH . N 6 HOH A 270 870 487 HOH HOH . N 6 HOH A 271 871 361 HOH HOH . N 6 HOH A 272 872 390 HOH HOH . N 6 HOH A 273 873 481 HOH HOH . N 6 HOH A 274 874 364 HOH HOH . N 6 HOH A 275 875 363 HOH HOH . N 6 HOH A 276 876 362 HOH HOH . N 6 HOH A 277 877 502 HOH HOH . N 6 HOH A 278 878 499 HOH HOH . N 6 HOH A 279 879 464 HOH HOH . N 6 HOH A 280 880 358 HOH HOH . N 6 HOH A 281 881 443 HOH HOH . N 6 HOH A 282 882 405 HOH HOH . N 6 HOH A 283 883 497 HOH HOH . N 6 HOH A 284 884 376 HOH HOH . N 6 HOH A 285 885 188 HOH HOH . N 6 HOH A 286 886 194 HOH HOH . N 6 HOH A 287 887 365 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . J 3 46.78 -21.955 66.447 1 89.97 ? S DMS 509 A 1 HETATM 2 O O DMS . . . J 3 45.521 -22.517 67.053 1 87.92 ? O DMS 509 A 1 HETATM 3 C C1 DMS . . . J 3 46.899 -22.664 64.827 1 86.23 ? C1 DMS 509 A 1 HETATM 4 C C2 DMS . . . J 3 48.129 -22.824 67.21 1 88.89 ? C2 DMS 509 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #