data_8F58 # _model_server_result.job_id ZK6FU6CamxSqMsBeqB7j-w _model_server_result.datetime_utc '2024-11-30 05:24:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f58 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":506}' # _entry.id 8F58 # _exptl.entry_id 8F58 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8F58 _cell.length_a 175.401 _cell.length_b 175.401 _cell.length_c 123.517 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F58 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 123.517 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 123.517 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 123.517 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 8F58 _atom_sites.fract_transf_matrix[1][1] 0.005701 _atom_sites.fract_transf_matrix[1][2] 0.003292 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008096 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 501 503 DMS DMS . C 2 DMS A 1 502 504 DMS DMS . D 2 DMS A 1 503 505 DMS DMS . E 3 GOL A 1 504 506 GOL GOL . F 4 XEH A 1 505 508 XEH 272 . G 3 GOL A 1 506 14 GOL GOL . H 3 GOL A 1 507 15 GOL GOL . I 5 PEG A 1 508 17 PEG PEG . J 6 HOH A 1 601 62 HOH HOH . J 6 HOH A 2 602 414 HOH HOH . J 6 HOH A 3 603 418 HOH HOH . J 6 HOH A 4 604 477 HOH HOH . J 6 HOH A 5 605 114 HOH HOH . J 6 HOH A 6 606 53 HOH HOH . J 6 HOH A 7 607 6 HOH HOH . J 6 HOH A 8 608 468 HOH HOH . J 6 HOH A 9 609 102 HOH HOH . J 6 HOH A 10 610 422 HOH HOH . J 6 HOH A 11 611 479 HOH HOH . J 6 HOH A 12 612 52 HOH HOH . J 6 HOH A 13 613 117 HOH HOH . J 6 HOH A 14 614 423 HOH HOH . J 6 HOH A 15 615 111 HOH HOH . J 6 HOH A 16 616 408 HOH HOH . J 6 HOH A 17 617 56 HOH HOH . J 6 HOH A 18 618 129 HOH HOH . J 6 HOH A 19 619 140 HOH HOH . J 6 HOH A 20 620 159 HOH HOH . J 6 HOH A 21 621 496 HOH HOH . J 6 HOH A 22 622 148 HOH HOH . J 6 HOH A 23 623 33 HOH HOH . J 6 HOH A 24 624 86 HOH HOH . J 6 HOH A 25 625 432 HOH HOH . J 6 HOH A 26 626 421 HOH HOH . J 6 HOH A 27 627 490 HOH HOH . J 6 HOH A 28 628 42 HOH HOH . J 6 HOH A 29 629 110 HOH HOH . J 6 HOH A 30 630 34 HOH HOH . J 6 HOH A 31 631 84 HOH HOH . J 6 HOH A 32 632 483 HOH HOH . J 6 HOH A 33 633 68 HOH HOH . J 6 HOH A 34 634 134 HOH HOH . J 6 HOH A 35 635 14 HOH HOH . J 6 HOH A 36 636 439 HOH HOH . J 6 HOH A 37 637 424 HOH HOH . J 6 HOH A 38 638 257 HOH HOH . J 6 HOH A 39 639 427 HOH HOH . J 6 HOH A 40 640 113 HOH HOH . J 6 HOH A 41 641 35 HOH HOH . J 6 HOH A 42 642 8 HOH HOH . J 6 HOH A 43 643 17 HOH HOH . J 6 HOH A 44 644 104 HOH HOH . J 6 HOH A 45 645 270 HOH HOH . J 6 HOH A 46 646 20 HOH HOH . J 6 HOH A 47 647 18 HOH HOH . J 6 HOH A 48 648 366 HOH HOH . J 6 HOH A 49 649 65 HOH HOH . J 6 HOH A 50 650 41 HOH HOH . J 6 HOH A 51 651 429 HOH HOH . J 6 HOH A 52 652 47 HOH HOH . J 6 HOH A 53 653 471 HOH HOH . J 6 HOH A 54 654 24 HOH HOH . J 6 HOH A 55 655 165 HOH HOH . J 6 HOH A 56 656 31 HOH HOH . J 6 HOH A 57 657 72 HOH HOH . J 6 HOH A 58 658 1 HOH HOH . J 6 HOH A 59 659 71 HOH HOH . J 6 HOH A 60 660 126 HOH HOH . J 6 HOH A 61 661 88 HOH HOH . J 6 HOH A 62 662 482 HOH HOH . J 6 HOH A 63 663 425 HOH HOH . J 6 HOH A 64 664 132 HOH HOH . J 6 HOH A 65 665 106 HOH HOH . J 6 HOH A 66 666 410 HOH HOH . J 6 HOH A 67 667 19 HOH HOH . J 6 HOH A 68 668 29 HOH HOH . J 6 HOH A 69 669 152 HOH HOH . J 6 HOH A 70 670 150 HOH HOH . J 6 HOH A 71 671 51 HOH HOH . J 6 HOH A 72 672 66 HOH HOH . J 6 HOH A 73 673 449 HOH HOH . J 6 HOH A 74 674 131 HOH HOH . J 6 HOH A 75 675 59 HOH HOH . J 6 HOH A 76 676 90 HOH HOH . J 6 HOH A 77 677 49 HOH HOH . J 6 HOH A 78 678 199 HOH HOH . J 6 HOH A 79 679 99 HOH HOH . J 6 HOH A 80 680 73 HOH HOH . J 6 HOH A 81 681 209 HOH HOH . J 6 HOH A 82 682 214 HOH HOH . J 6 HOH A 83 683 46 HOH HOH . J 6 HOH A 84 684 426 HOH HOH . J 6 HOH A 85 685 15 HOH HOH . J 6 HOH A 86 686 438 HOH HOH . J 6 HOH A 87 687 409 HOH HOH . J 6 HOH A 88 688 69 HOH HOH . J 6 HOH A 89 689 22 HOH HOH . J 6 HOH A 90 690 122 HOH HOH . J 6 HOH A 91 691 89 HOH HOH . J 6 HOH A 92 692 119 HOH HOH . J 6 HOH A 93 693 151 HOH HOH . J 6 HOH A 94 694 37 HOH HOH . J 6 HOH A 95 695 183 HOH HOH . J 6 HOH A 96 696 244 HOH HOH . J 6 HOH A 97 697 4 HOH HOH . J 6 HOH A 98 698 3 HOH HOH . J 6 HOH A 99 699 75 HOH HOH . J 6 HOH A 100 700 157 HOH HOH . J 6 HOH A 101 701 155 HOH HOH . J 6 HOH A 102 702 118 HOH HOH . J 6 HOH A 103 703 128 HOH HOH . J 6 HOH A 104 704 420 HOH HOH . J 6 HOH A 105 705 115 HOH HOH . J 6 HOH A 106 706 93 HOH HOH . J 6 HOH A 107 707 120 HOH HOH . J 6 HOH A 108 708 478 HOH HOH . J 6 HOH A 109 709 39 HOH HOH . J 6 HOH A 110 710 473 HOH HOH . J 6 HOH A 111 711 82 HOH HOH . J 6 HOH A 112 712 138 HOH HOH . J 6 HOH A 113 713 465 HOH HOH . J 6 HOH A 114 714 121 HOH HOH . J 6 HOH A 115 715 60 HOH HOH . J 6 HOH A 116 716 450 HOH HOH . J 6 HOH A 117 717 403 HOH HOH . J 6 HOH A 118 718 486 HOH HOH . J 6 HOH A 119 719 95 HOH HOH . J 6 HOH A 120 720 466 HOH HOH . J 6 HOH A 121 721 419 HOH HOH . J 6 HOH A 122 722 36 HOH HOH . J 6 HOH A 123 723 143 HOH HOH . J 6 HOH A 124 724 40 HOH HOH . J 6 HOH A 125 725 32 HOH HOH . J 6 HOH A 126 726 38 HOH HOH . J 6 HOH A 127 727 124 HOH HOH . J 6 HOH A 128 728 476 HOH HOH . J 6 HOH A 129 729 25 HOH HOH . J 6 HOH A 130 730 445 HOH HOH . J 6 HOH A 131 731 12 HOH HOH . J 6 HOH A 132 732 170 HOH HOH . J 6 HOH A 133 733 499 HOH HOH . J 6 HOH A 134 734 105 HOH HOH . J 6 HOH A 135 735 191 HOH HOH . J 6 HOH A 136 736 166 HOH HOH . J 6 HOH A 137 737 204 HOH HOH . J 6 HOH A 138 738 103 HOH HOH . J 6 HOH A 139 739 440 HOH HOH . J 6 HOH A 140 740 475 HOH HOH . J 6 HOH A 141 741 45 HOH HOH . J 6 HOH A 142 742 5 HOH HOH . J 6 HOH A 143 743 368 HOH HOH . J 6 HOH A 144 744 185 HOH HOH . J 6 HOH A 145 745 11 HOH HOH . J 6 HOH A 146 746 57 HOH HOH . J 6 HOH A 147 747 436 HOH HOH . J 6 HOH A 148 748 13 HOH HOH . J 6 HOH A 149 749 109 HOH HOH . J 6 HOH A 150 750 67 HOH HOH . J 6 HOH A 151 751 79 HOH HOH . J 6 HOH A 152 752 7 HOH HOH . J 6 HOH A 153 753 81 HOH HOH . J 6 HOH A 154 754 231 HOH HOH . J 6 HOH A 155 755 225 HOH HOH . J 6 HOH A 156 756 87 HOH HOH . J 6 HOH A 157 757 173 HOH HOH . J 6 HOH A 158 758 100 HOH HOH . J 6 HOH A 159 759 80 HOH HOH . J 6 HOH A 160 760 402 HOH HOH . J 6 HOH A 161 761 484 HOH HOH . J 6 HOH A 162 762 455 HOH HOH . J 6 HOH A 163 763 472 HOH HOH . J 6 HOH A 164 764 453 HOH HOH . J 6 HOH A 165 765 130 HOH HOH . J 6 HOH A 166 766 178 HOH HOH . J 6 HOH A 167 767 184 HOH HOH . J 6 HOH A 168 768 123 HOH HOH . J 6 HOH A 169 769 489 HOH HOH . J 6 HOH A 170 770 495 HOH HOH . J 6 HOH A 171 771 497 HOH HOH . J 6 HOH A 172 772 498 HOH HOH . J 6 HOH A 173 773 58 HOH HOH . J 6 HOH A 174 774 27 HOH HOH . J 6 HOH A 175 775 10 HOH HOH . J 6 HOH A 176 776 141 HOH HOH . J 6 HOH A 177 777 144 HOH HOH . J 6 HOH A 178 778 485 HOH HOH . J 6 HOH A 179 779 442 HOH HOH . J 6 HOH A 180 780 44 HOH HOH . J 6 HOH A 181 781 23 HOH HOH . J 6 HOH A 182 782 55 HOH HOH . J 6 HOH A 183 783 488 HOH HOH . J 6 HOH A 184 784 240 HOH HOH . J 6 HOH A 185 785 480 HOH HOH . J 6 HOH A 186 786 469 HOH HOH . J 6 HOH A 187 787 492 HOH HOH . J 6 HOH A 188 788 127 HOH HOH . J 6 HOH A 189 789 107 HOH HOH . J 6 HOH A 190 790 161 HOH HOH . J 6 HOH A 191 791 401 HOH HOH . J 6 HOH A 192 792 212 HOH HOH . J 6 HOH A 193 793 158 HOH HOH . J 6 HOH A 194 794 48 HOH HOH . J 6 HOH A 195 795 30 HOH HOH . J 6 HOH A 196 796 247 HOH HOH . J 6 HOH A 197 797 108 HOH HOH . J 6 HOH A 198 798 169 HOH HOH . J 6 HOH A 199 799 433 HOH HOH . J 6 HOH A 200 800 163 HOH HOH . J 6 HOH A 201 801 26 HOH HOH . J 6 HOH A 202 802 101 HOH HOH . J 6 HOH A 203 803 415 HOH HOH . J 6 HOH A 204 804 63 HOH HOH . J 6 HOH A 205 805 286 HOH HOH . J 6 HOH A 206 806 463 HOH HOH . J 6 HOH A 207 807 76 HOH HOH . J 6 HOH A 208 808 474 HOH HOH . J 6 HOH A 209 809 417 HOH HOH . J 6 HOH A 210 810 435 HOH HOH . J 6 HOH A 211 811 16 HOH HOH . J 6 HOH A 212 812 201 HOH HOH . J 6 HOH A 213 813 431 HOH HOH . J 6 HOH A 214 814 457 HOH HOH . J 6 HOH A 215 815 452 HOH HOH . J 6 HOH A 216 816 357 HOH HOH . J 6 HOH A 217 817 470 HOH HOH . J 6 HOH A 218 818 97 HOH HOH . J 6 HOH A 219 819 136 HOH HOH . J 6 HOH A 220 820 411 HOH HOH . J 6 HOH A 221 821 444 HOH HOH . J 6 HOH A 222 822 416 HOH HOH . J 6 HOH A 223 823 360 HOH HOH . J 6 HOH A 224 824 362 HOH HOH . J 6 HOH A 225 825 382 HOH HOH . J 6 HOH A 226 826 404 HOH HOH . J 6 HOH A 227 827 390 HOH HOH . J 6 HOH A 228 828 487 HOH HOH . J 6 HOH A 229 829 211 HOH HOH . J 6 HOH A 230 830 491 HOH HOH . J 6 HOH A 231 831 189 HOH HOH . J 6 HOH A 232 832 405 HOH HOH . J 6 HOH A 233 833 361 HOH HOH . J 6 HOH A 234 834 481 HOH HOH . J 6 HOH A 235 835 364 HOH HOH . J 6 HOH A 236 836 443 HOH HOH . J 6 HOH A 237 837 376 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 3 22.284 -16.251 42.64 0.8 52.96 ? C1 GOL 506 A 1 HETATM 2 O O1 GOL . . . G 3 20.874 -16.046 42.656 0.8 52.16 ? O1 GOL 506 A 1 HETATM 3 C C2 GOL . . . G 3 22.952 -15.685 43.872 0.8 52.77 ? C2 GOL 506 A 1 HETATM 4 O O2 GOL . . . G 3 22.418 -14.386 44.13 0.8 55.8 ? O2 GOL 506 A 1 HETATM 5 C C3 GOL . . . G 3 22.802 -16.566 45.098 0.8 52.65 ? C3 GOL 506 A 1 HETATM 6 O O3 GOL . . . G 3 21.835 -16.065 46.02 0.8 50.79 ? O3 GOL 506 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 6 #