data_8F5F # _model_server_result.job_id 86jaSIuyNSVPtbHNNVa3iQ _model_server_result.datetime_utc '2025-01-10 10:35:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f5f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 8F5F # _exptl.entry_id 8F5F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 380.46 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2P)-2-[(4P)-4-{6-[(1-ethylcyclopropyl)methoxy]pyridin-3-yl}-1,3-thiazol-2-yl]benzoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8F5F _cell.length_a 118.37 _cell.length_b 118.37 _cell.length_c 156.23 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F5F _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 A,C,D,E,F,K 1 3 B,G,H,I,J,L 2 2 B,G,H,I,J,L 2 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_445 -y-1,x-1,z+1/4 0 -1 0 1 0 0 0 0 1 -118.37 -118.37 39.0575 3 'crystal symmetry operation' 6_545 x,-y-1,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 -118.37 78.115 4 'crystal symmetry operation' 8_455 -y-1,-x,-z+1/4 0 -1 0 -1 0 0 0 0 -1 -118.37 0 39.0575 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 249 A ASN 249 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc2 C O3B ADP . A ADP 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc3 C O1A ADP . A ADP 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc4 D MG MG . A MG 402 1_555 K O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc5 D MG MG . A MG 402 1_555 K O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc6 B OE1 GLU 245 B GLU 245 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc7 B OD1 ASN 249 B ASN 249 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc8 G O1B ADP . B ADP 401 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc9 G O1A ADP . B ADP 401 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? # _chem_comp.formula 'C21 H20 N2 O3 S' _chem_comp.formula_weight 380.46 _chem_comp.id XGG _chem_comp.mon_nstd_flag . _chem_comp.name '(2P)-2-[(4P)-4-{6-[(1-ethylcyclopropyl)methoxy]pyridin-3-yl}-1,3-thiazol-2-yl]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C4 XGG sing 424 n n C5 C3 XGG sing 425 n n C4 C3 XGG sing 426 n n C3 C2 XGG sing 427 n n C3 C6 XGG sing 428 n n C2 C1 XGG sing 429 n n C6 O7 XGG sing 430 n n O7 C8 XGG sing 431 n n N13 C8 XGG doub 432 n y N13 C12 XGG sing 433 n y C8 C9 XGG sing 434 n y C12 C11 XGG doub 435 n y C9 C10 XGG doub 436 n y C11 C10 XGG sing 437 n y C11 C14 XGG sing 438 n n C15 C14 XGG doub 439 n y C15 S16 XGG sing 440 n y C14 N18 XGG sing 441 n y S16 C17 XGG sing 442 n y N18 C17 XGG doub 443 n y C17 C19 XGG sing 444 n n C19 C20 XGG doub 445 n y C19 C24 XGG sing 446 n y C20 C21 XGG sing 447 n y O27 C25 XGG doub 448 n n O26 C25 XGG sing 449 n n C25 C24 XGG sing 450 n n C24 C23 XGG doub 451 n y C21 C22 XGG doub 452 n y C23 C22 XGG sing 453 n y C4 H34 XGG sing 454 n n C4 H33 XGG sing 455 n n C6 H37 XGG sing 456 n n C6 H38 XGG sing 457 n n C9 H39 XGG sing 458 n n C20 H43 XGG sing 459 n n C21 H44 XGG sing 460 n n C1 H28 XGG sing 461 n n C1 H30 XGG sing 462 n n C1 H29 XGG sing 463 n n C2 H31 XGG sing 464 n n C2 H32 XGG sing 465 n n C5 H35 XGG sing 466 n n C5 H36 XGG sing 467 n n C10 H40 XGG sing 468 n n C12 H41 XGG sing 469 n n C15 H42 XGG sing 470 n n C22 H45 XGG sing 471 n n C23 H46 XGG sing 472 n n O26 H1 XGG sing 473 n n # _atom_sites.entry_id 8F5F _atom_sites.fract_transf_matrix[1][1] 0.008448 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008448 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 401 401 ADP ADP . D 3 MG A 1 402 402 MG MG . E 4 XGG A 1 403 501 XGG PFE . F 5 SO4 A 1 404 1 SO4 SO4 . G 2 ADP B 1 401 401 ADP ADP . H 3 MG B 1 402 402 MG MG . I 4 XGG B 1 403 501 XGG PFE . J 5 SO4 B 1 404 2 SO4 SO4 . K 6 HOH A 1 501 5 HOH HOH . K 6 HOH A 2 502 10 HOH HOH . K 6 HOH A 3 503 8 HOH HOH . K 6 HOH A 4 504 2 HOH HOH . K 6 HOH A 5 505 3 HOH HOH . K 6 HOH A 6 506 4 HOH HOH . K 6 HOH A 7 507 1 HOH HOH . K 6 HOH A 8 508 9 HOH HOH . K 6 HOH A 9 509 6 HOH HOH . K 6 HOH A 10 510 7 HOH HOH . K 6 HOH A 11 511 13 HOH HOH . L 6 HOH B 1 501 11 HOH HOH . L 6 HOH B 2 502 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 XGG . . . E 4 17.987 -45.324 6.936 1 90.74 ? C4 XGG 403 A 1 HETATM 2 C C6 XGG . . . E 4 18.212 -43.536 8.8 1 90.94 ? C6 XGG 403 A 1 HETATM 3 C C9 XGG . . . E 4 19.879 -45.154 11.631 1 91.46 ? C9 XGG 403 A 1 HETATM 4 C C20 XGG . . . E 4 25.788 -44.718 16.479 1 92.37 ? C20 XGG 403 A 1 HETATM 5 C C21 XGG . . . E 4 26.217 -45.086 17.741 1 92.07 ? C21 XGG 403 A 1 HETATM 6 C C8 XGG . . . E 4 19.537 -44.165 10.712 1 91.12 ? C8 XGG 403 A 1 HETATM 7 C C19 XGG . . . E 4 24.527 -44.147 16.307 1 92.72 ? C19 XGG 403 A 1 HETATM 8 C C1 XGG . . . E 4 15.117 -43.057 8.263 1 89.91 ? C1 XGG 403 A 1 HETATM 9 C C2 XGG . . . E 4 15.877 -44.357 8.131 1 90.12 ? C2 XGG 403 A 1 HETATM 10 C C3 XGG . . . E 4 17.361 -44.231 7.739 1 90.65 ? C3 XGG 403 A 1 HETATM 11 C C5 XGG . . . E 4 17.699 -43.995 6.304 1 90.68 ? C5 XGG 403 A 1 HETATM 12 O O7 XGG . . . E 4 18.575 -44.501 9.813 1 90.96 ? O7 XGG 403 A 1 HETATM 13 C C10 XGG . . . E 4 20.978 -44.914 12.434 1 91.66 ? C10 XGG 403 A 1 HETATM 14 C C11 XGG . . . E 4 21.673 -43.718 12.326 1 91.77 ? C11 XGG 403 A 1 HETATM 15 C C12 XGG . . . E 4 21.202 -42.788 11.409 1 91.35 ? C12 XGG 403 A 1 HETATM 16 N N13 XGG . . . E 4 20.15 -42.994 10.609 1 91.12 ? N13 XGG 403 A 1 HETATM 17 C C14 XGG . . . E 4 22.877 -43.458 13.135 1 92.32 ? C14 XGG 403 A 1 HETATM 18 C C15 XGG . . . E 4 23.84 -42.542 12.858 1 92.53 ? C15 XGG 403 A 1 HETATM 19 S S16 XGG . . . E 4 24.989 -42.455 14.128 1 92.73 ? S16 XGG 403 A 1 HETATM 20 C C17 XGG . . . E 4 24.116 -43.678 14.979 1 92.67 ? C17 XGG 403 A 1 HETATM 21 N N18 XGG . . . E 4 23.052 -44.112 14.351 1 92.54 ? N18 XGG 403 A 1 HETATM 22 C C22 XGG . . . E 4 25.403 -44.905 18.831 1 92.24 ? C22 XGG 403 A 1 HETATM 23 C C23 XGG . . . E 4 24.143 -44.352 18.681 1 92.76 ? C23 XGG 403 A 1 HETATM 24 C C24 XGG . . . E 4 23.698 -43.956 17.421 1 93.08 ? C24 XGG 403 A 1 HETATM 25 C C25 XGG . . . E 4 22.385 -43.261 17.311 1 93.6 ? C25 XGG 403 A 1 HETATM 26 O O26 XGG . . . E 4 22.307 -42.032 17.264 1 93.87 ? O26 XGG 403 A 1 HETATM 27 O O27 XGG . . . E 4 21.349 -44.056 17.228 1 93.67 ? O27 XGG 403 A 1 HETATM 28 H H34 XGG . . . E 4 19.013 -45.636 7.122 0 101.02 ? H34 XGG 403 A 1 HETATM 29 H H33 XGG . . . E 4 17.406 -46.202 6.657 0 101.43 ? H33 XGG 403 A 1 HETATM 30 H H37 XGG . . . E 4 17.708 -42.681 9.248 0 101.55 ? H37 XGG 403 A 1 HETATM 31 H H38 XGG . . . E 4 19.107 -43.145 8.32 0 101.69 ? H38 XGG 403 A 1 HETATM 32 H H39 XGG . . . E 4 19.31 -46.08 11.7 0 98.46 ? H39 XGG 403 A 1 HETATM 33 H H43 XGG . . . E 4 26.428 -44.876 15.612 0 97.36 ? H43 XGG 403 A 1 HETATM 34 H H44 XGG . . . E 4 27.207 -45.522 17.869 0 95.74 ? H44 XGG 403 A 1 HETATM 35 H H28 XGG . . . E 4 14.043 -43.233 8.306 0 101.96 ? H28 XGG 403 A 1 HETATM 36 H H30 XGG . . . E 4 15.3 -42.386 7.426 0 102.64 ? H30 XGG 403 A 1 HETATM 37 H H29 XGG . . . E 4 15.374 -42.51 9.169 0 101.27 ? H29 XGG 403 A 1 HETATM 38 H H31 XGG . . . E 4 15.813 -44.901 9.073 0 100.17 ? H31 XGG 403 A 1 HETATM 39 H H32 XGG . . . E 4 15.393 -45.004 7.401 0 101.42 ? H32 XGG 403 A 1 HETATM 40 H H35 XGG . . . E 4 16.9 -43.9 5.57 0 103.52 ? H35 XGG 403 A 1 HETATM 41 H H36 XGG . . . E 4 18.514 -43.333 6.017 0 103.2 ? H36 XGG 403 A 1 HETATM 42 H H40 XGG . . . E 4 21.289 -45.689 13.133 0 97.67 ? H40 XGG 403 A 1 HETATM 43 H H41 XGG . . . E 4 21.65 -41.805 11.273 0 100.65 ? H41 XGG 403 A 1 HETATM 44 H H42 XGG . . . E 4 23.952 -41.905 11.982 0 101.29 ? H42 XGG 403 A 1 HETATM 45 H H45 XGG . . . E 4 25.744 -45.194 19.824 0 95.12 ? H45 XGG 403 A 1 HETATM 46 H H46 XGG . . . E 4 23.494 -44.226 19.547 0 96.15 ? H46 XGG 403 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 55 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 46 #