data_8F5X # _model_server_result.job_id jJeb5-xPf_dv1B62HvpbLg _model_server_result.datetime_utc '2024-11-09 02:33:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8F5X # _exptl.entry_id 8F5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.088 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SUCCINIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8F5X _cell.length_a 41.78 _cell.length_b 52.45 _cell.length_c 56.36 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 23 1_555 A SG CYS 84 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 38 A CYS 37 1_555 A SG CYS 97 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 56 A CYS 55 1_555 A SG CYS 112 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf4 A SG CYS 63 A CYS 62 1_555 A SG CYS 72 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? # _chem_comp.formula 'C4 H6 O4' _chem_comp.formula_weight 118.088 _chem_comp.id SIN _chem_comp.mon_nstd_flag . _chem_comp.name 'SUCCINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 SIN doub 338 n n C1 O2 SIN sing 339 n n C1 C2 SIN sing 340 n n O2 HO2 SIN sing 341 n n C2 C3 SIN sing 342 n n C2 H21 SIN sing 343 n n C2 H22 SIN sing 344 n n C3 C4 SIN sing 345 n n C3 H31 SIN sing 346 n n C3 H32 SIN sing 347 n n C4 O3 SIN doub 348 n n C4 O4 SIN sing 349 n n O4 HO4 SIN sing 350 n n # _atom_sites.entry_id 8F5X _atom_sites.fract_transf_matrix[1][1] 0.023935 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017743 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SIN A 1 201 136 SIN SIN . C 2 SIN A 1 202 137 SIN SIN . D 3 EDO A 1 203 138 EDO EDO . E 4 AMP A 1 204 301 AMP AMP . F 3 EDO A 1 205 401 EDO EDO . G 2 SIN A 1 206 501 SIN SIN . H 3 EDO A 1 207 601 EDO EDO . I 3 EDO A 1 208 701 EDO EDO . J 5 HOH A 1 301 125 HOH HOH . J 5 HOH A 2 302 119 HOH HOH . J 5 HOH A 3 303 5 HOH HOH . J 5 HOH A 4 304 15 HOH HOH . J 5 HOH A 5 305 81 HOH HOH . J 5 HOH A 6 306 126 HOH HOH . J 5 HOH A 7 307 75 HOH HOH . J 5 HOH A 8 308 22 HOH HOH . J 5 HOH A 9 309 47 HOH HOH . J 5 HOH A 10 310 1 HOH HOH . J 5 HOH A 11 311 74 HOH HOH . J 5 HOH A 12 312 52 HOH HOH . J 5 HOH A 13 313 80 HOH HOH . J 5 HOH A 14 314 91 HOH HOH . J 5 HOH A 15 315 40 HOH HOH . J 5 HOH A 16 316 72 HOH HOH . J 5 HOH A 17 317 77 HOH HOH . J 5 HOH A 18 318 12 HOH HOH . J 5 HOH A 19 319 21 HOH HOH . J 5 HOH A 20 320 10 HOH HOH . J 5 HOH A 21 321 33 HOH HOH . J 5 HOH A 22 322 23 HOH HOH . J 5 HOH A 23 323 19 HOH HOH . J 5 HOH A 24 324 38 HOH HOH . J 5 HOH A 25 325 131 HOH HOH . J 5 HOH A 26 326 25 HOH HOH . J 5 HOH A 27 327 117 HOH HOH . J 5 HOH A 28 328 26 HOH HOH . J 5 HOH A 29 329 46 HOH HOH . J 5 HOH A 30 330 59 HOH HOH . J 5 HOH A 31 331 31 HOH HOH . J 5 HOH A 32 332 62 HOH HOH . J 5 HOH A 33 333 27 HOH HOH . J 5 HOH A 34 334 36 HOH HOH . J 5 HOH A 35 335 44 HOH HOH . J 5 HOH A 36 336 73 HOH HOH . J 5 HOH A 37 337 35 HOH HOH . J 5 HOH A 38 338 71 HOH HOH . J 5 HOH A 39 339 56 HOH HOH . J 5 HOH A 40 340 11 HOH HOH . J 5 HOH A 41 341 108 HOH HOH . J 5 HOH A 42 342 16 HOH HOH . J 5 HOH A 43 343 86 HOH HOH . J 5 HOH A 44 344 24 HOH HOH . J 5 HOH A 45 345 17 HOH HOH . J 5 HOH A 46 346 34 HOH HOH . J 5 HOH A 47 347 37 HOH HOH . J 5 HOH A 48 348 58 HOH HOH . J 5 HOH A 49 349 61 HOH HOH . J 5 HOH A 50 350 82 HOH HOH . J 5 HOH A 51 351 42 HOH HOH . J 5 HOH A 52 352 116 HOH HOH . J 5 HOH A 53 353 14 HOH HOH . J 5 HOH A 54 354 29 HOH HOH . J 5 HOH A 55 355 120 HOH HOH . J 5 HOH A 56 356 60 HOH HOH . J 5 HOH A 57 357 96 HOH HOH . J 5 HOH A 58 358 87 HOH HOH . J 5 HOH A 59 359 99 HOH HOH . J 5 HOH A 60 360 45 HOH HOH . J 5 HOH A 61 361 20 HOH HOH . J 5 HOH A 62 362 48 HOH HOH . J 5 HOH A 63 363 53 HOH HOH . J 5 HOH A 64 364 30 HOH HOH . J 5 HOH A 65 365 43 HOH HOH . J 5 HOH A 66 366 8 HOH HOH . J 5 HOH A 67 367 13 HOH HOH . J 5 HOH A 68 368 55 HOH HOH . J 5 HOH A 69 369 68 HOH HOH . J 5 HOH A 70 370 32 HOH HOH . J 5 HOH A 71 371 9 HOH HOH . J 5 HOH A 72 372 51 HOH HOH . J 5 HOH A 73 373 18 HOH HOH . J 5 HOH A 74 374 65 HOH HOH . J 5 HOH A 75 375 50 HOH HOH . J 5 HOH A 76 376 89 HOH HOH . J 5 HOH A 77 377 66 HOH HOH . J 5 HOH A 78 378 63 HOH HOH . J 5 HOH A 79 379 54 HOH HOH . J 5 HOH A 80 380 102 HOH HOH . J 5 HOH A 81 381 4 HOH HOH . J 5 HOH A 82 382 93 HOH HOH . J 5 HOH A 83 383 49 HOH HOH . J 5 HOH A 84 384 84 HOH HOH . J 5 HOH A 85 385 57 HOH HOH . J 5 HOH A 86 386 90 HOH HOH . J 5 HOH A 87 387 70 HOH HOH . J 5 HOH A 88 388 39 HOH HOH . J 5 HOH A 89 389 64 HOH HOH . J 5 HOH A 90 390 115 HOH HOH . J 5 HOH A 91 391 105 HOH HOH . J 5 HOH A 92 392 28 HOH HOH . J 5 HOH A 93 393 100 HOH HOH . J 5 HOH A 94 394 83 HOH HOH . J 5 HOH A 95 395 110 HOH HOH . J 5 HOH A 96 396 6 HOH HOH . J 5 HOH A 97 397 41 HOH HOH . J 5 HOH A 98 398 95 HOH HOH . J 5 HOH A 99 399 104 HOH HOH . J 5 HOH A 100 400 92 HOH HOH . J 5 HOH A 101 401 114 HOH HOH . J 5 HOH A 102 402 112 HOH HOH . J 5 HOH A 103 403 2 HOH HOH . J 5 HOH A 104 404 69 HOH HOH . J 5 HOH A 105 405 67 HOH HOH . J 5 HOH A 106 406 79 HOH HOH . J 5 HOH A 107 407 76 HOH HOH . J 5 HOH A 108 408 111 HOH HOH . J 5 HOH A 109 409 88 HOH HOH . J 5 HOH A 110 410 97 HOH HOH . J 5 HOH A 111 411 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SIN . . . B 2 13.442 -6.784 9.175 1 45.67 ? C1 SIN 201 A 1 HETATM 2 O O1 SIN . . . B 2 14.181 -7.744 9.135 1 50.72 ? O1 SIN 201 A 1 HETATM 3 O O2 SIN . . . B 2 12.993 -6.323 10.203 1 41.59 ? O2 SIN 201 A 1 HETATM 4 C C2 SIN . . . B 2 13.053 -6.14 7.871 1 43.22 ? C2 SIN 201 A 1 HETATM 5 C C3 SIN . . . B 2 12.718 -4.707 7.982 1 39.96 ? C3 SIN 201 A 1 HETATM 6 C C4 SIN . . . B 2 12.212 -4.065 6.707 1 40.75 ? C4 SIN 201 A 1 HETATM 7 O O3 SIN . . . B 2 12.344 -4.626 5.652 1 39.45 ? O3 SIN 201 A 1 HETATM 8 O O4 SIN . . . B 2 11.713 -2.951 6.841 1 28.91 ? O4 SIN 201 A 1 HETATM 9 H H21 SIN . . . B 2 12.283 -6.624 7.507 1 51.48 ? H21 SIN 201 A 1 HETATM 10 H H22 SIN . . . B 2 13.794 -6.25 7.24 1 51.48 ? H22 SIN 201 A 1 HETATM 11 H H31 SIN . . . B 2 13.512 -4.215 8.276 1 47.57 ? H31 SIN 201 A 1 HETATM 12 H H32 SIN . . . B 2 12.033 -4.592 8.673 1 47.57 ? H32 SIN 201 A 1 # _model_server_stats.io_time_ms 234 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #