data_8F68 # _model_server_result.job_id NhNO1UDQ6RtEMMUj3HWw5g _model_server_result.datetime_utc '2025-02-28 02:10:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f68 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 8F68 # _exptl.entry_id 8F68 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8F68 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F68 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 106 A HIS 106 1_555 E FE HEM . A HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc2 A ND1 HIS 284 A HIS 284 1_555 G CU CU . A CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc3 A NE2 HIS 333 A HIS 333 1_555 G CU CU . A CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc4 A NE2 HIS 334 A HIS 334 1_555 G CU CU . A CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc5 A NE2 HIS 419 A HIS 419 1_555 F FE HEO . A HEO 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc6 A NE2 HIS 421 A HIS 421 1_555 E FE HEM . A HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 261 n n CHA C4D HEM doub 262 n n CHA HHA HEM sing 263 n n CHB C4A HEM sing 264 n n CHB C1B HEM doub 265 n n CHB HHB HEM sing 266 n n CHC C4B HEM sing 267 n n CHC C1C HEM doub 268 n n CHC HHC HEM sing 269 n n CHD C4C HEM doub 270 n n CHD C1D HEM sing 271 n n CHD HHD HEM sing 272 n n C1A C2A HEM doub 273 n y C1A NA HEM sing 274 n y C2A C3A HEM sing 275 n y C2A CAA HEM sing 276 n n C3A C4A HEM doub 277 n y C3A CMA HEM sing 278 n n C4A NA HEM sing 279 n y CMA HMA HEM sing 280 n n CMA HMAA HEM sing 281 n n CMA HMAB HEM sing 282 n n CAA CBA HEM sing 283 n n CAA HAA HEM sing 284 n n CAA HAAA HEM sing 285 n n CBA CGA HEM sing 286 n n CBA HBA HEM sing 287 n n CBA HBAA HEM sing 288 n n CGA O1A HEM doub 289 n n CGA O2A HEM sing 290 n n C1B C2B HEM sing 291 n n C1B NB HEM sing 292 n n C2B C3B HEM doub 293 n n C2B CMB HEM sing 294 n n C3B C4B HEM sing 295 n n C3B CAB HEM sing 296 n n C4B NB HEM doub 297 n n CMB HMB HEM sing 298 n n CMB HMBA HEM sing 299 n n CMB HMBB HEM sing 300 n n CAB CBB HEM doub 301 n n CAB HAB HEM sing 302 n n CBB HBB HEM sing 303 n n CBB HBBA HEM sing 304 n n C1C C2C HEM sing 305 n y C1C NC HEM sing 306 n y C2C C3C HEM doub 307 n y C2C CMC HEM sing 308 n n C3C C4C HEM sing 309 n y C3C CAC HEM sing 310 n n C4C NC HEM sing 311 n y CMC HMC HEM sing 312 n n CMC HMCA HEM sing 313 n n CMC HMCB HEM sing 314 n n CAC CBC HEM doub 315 n n CAC HAC HEM sing 316 n n CBC HBC HEM sing 317 n n CBC HBCA HEM sing 318 n n C1D C2D HEM sing 319 n n C1D ND HEM doub 320 n n C2D C3D HEM doub 321 n n C2D CMD HEM sing 322 n n C3D C4D HEM sing 323 n n C3D CAD HEM sing 324 n n C4D ND HEM sing 325 n n CMD HMD HEM sing 326 n n CMD HMDA HEM sing 327 n n CMD HMDB HEM sing 328 n n CAD CBD HEM sing 329 n n CAD HAD HEM sing 330 n n CAD HADA HEM sing 331 n n CBD CGD HEM sing 332 n n CBD HBD HEM sing 333 n n CBD HBDA HEM sing 334 n n CGD O1D HEM doub 335 n n CGD O2D HEM sing 336 n n O2A H2A HEM sing 337 n n O2D H2D HEM sing 338 n n FE NA HEM sing 339 n n FE NB HEM sing 340 n n FE NC HEM sing 341 n n FE ND HEM sing 342 n n # _atom_sites.entry_id 8F68 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HEM A 1 1001 1001 HEM HEM . F 6 HEO A 1 1002 1002 HEO HEO . G 7 CU A 1 1003 1003 CU CU . H 8 3PE A 1 1004 1005 3PE 3PE . I 8 3PE A 1 1005 1006 3PE 3PE . J 8 3PE C 1 401 401 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 5 175.208 168.561 180.748 1 16.2 ? CHA HEM 1001 A 1 HETATM 2 C CHB HEM . . . E 5 174.749 165.688 184.627 1 16.19 ? CHB HEM 1001 A 1 HETATM 3 C CHC HEM . . . E 5 171.45 163 182.274 1 16.17 ? CHC HEM 1001 A 1 HETATM 4 C CHD HEM . . . E 5 171.808 166.009 178.48 1 16.2 ? CHD HEM 1001 A 1 HETATM 5 C C1A HEM . . . E 5 175.357 167.995 181.991 1 16.24 ? C1A HEM 1001 A 1 HETATM 6 C C2A HEM . . . E 5 176.126 168.548 183.028 1 16.31 ? C2A HEM 1001 A 1 HETATM 7 C C3A HEM . . . E 5 176.002 167.746 184.117 1 16.28 ? C3A HEM 1001 A 1 HETATM 8 C C4A HEM . . . E 5 175.134 166.696 183.772 1 16.23 ? C4A HEM 1001 A 1 HETATM 9 C CMA HEM . . . E 5 176.692 167.969 185.446 1 16.31 ? CMA HEM 1001 A 1 HETATM 10 C CAA HEM . . . E 5 176.976 169.794 182.96 1 16.38 ? CAA HEM 1001 A 1 HETATM 11 C CBA HEM . . . E 5 176.183 171.019 183.423 1 16.43 ? CBA HEM 1001 A 1 HETATM 12 C CGA HEM . . . E 5 177.176 172.127 183.609 1 16.47 ? CGA HEM 1001 A 1 HETATM 13 O O1A HEM . . . E 5 177.545 172.466 184.755 1 16.49 ? O1A HEM 1001 A 1 HETATM 14 O O2A HEM . . . E 5 177.65 172.686 182.598 1 16.5 ? O2A HEM 1001 A 1 HETATM 15 C C1B HEM . . . E 5 173.799 164.73 184.282 1 16.17 ? C1B HEM 1001 A 1 HETATM 16 C C2B HEM . . . E 5 173.35 163.761 185.227 1 16.16 ? C2B HEM 1001 A 1 HETATM 17 C C3B HEM . . . E 5 172.415 162.999 184.61 1 16.17 ? C3B HEM 1001 A 1 HETATM 18 C C4B HEM . . . E 5 172.335 163.508 183.215 1 16.16 ? C4B HEM 1001 A 1 HETATM 19 C CMB HEM . . . E 5 173.785 163.578 186.673 1 16.16 ? CMB HEM 1001 A 1 HETATM 20 C CAB HEM . . . E 5 171.843 161.816 185.281 1 16.17 ? CAB HEM 1001 A 1 HETATM 21 C CBB HEM . . . E 5 171.658 160.662 184.66 1 16.19 ? CBB HEM 1001 A 1 HETATM 22 C C1C HEM . . . E 5 171.258 163.599 181.037 1 16.19 ? C1C HEM 1001 A 1 HETATM 23 C C2C HEM . . . E 5 170.45 163.075 180.013 1 16.22 ? C2C HEM 1001 A 1 HETATM 24 C C3C HEM . . . E 5 170.575 163.937 178.932 1 16.22 ? C3C HEM 1001 A 1 HETATM 25 C C4C HEM . . . E 5 171.44 164.988 179.322 1 16.21 ? C4C HEM 1001 A 1 HETATM 26 C CMC HEM . . . E 5 169.627 161.812 180.075 1 16.23 ? CMC HEM 1001 A 1 HETATM 27 C CAC HEM . . . E 5 169.93 163.956 177.604 1 16.26 ? CAC HEM 1001 A 1 HETATM 28 C CBC HEM . . . E 5 168.747 163.472 177.293 1 16.3 ? CBC HEM 1001 A 1 HETATM 29 C C1D HEM . . . E 5 172.769 166.956 178.804 1 16.2 ? C1D HEM 1001 A 1 HETATM 30 C C2D HEM . . . E 5 173.068 168.103 177.929 1 16.19 ? C2D HEM 1001 A 1 HETATM 31 C C3D HEM . . . E 5 174.021 168.808 178.561 1 16.19 ? C3D HEM 1001 A 1 HETATM 32 C C4D HEM . . . E 5 174.288 168.098 179.819 1 16.18 ? C4D HEM 1001 A 1 HETATM 33 C CMD HEM . . . E 5 172.457 168.445 176.589 1 16.2 ? CMD HEM 1001 A 1 HETATM 34 C CAD HEM . . . E 5 174.66 170.08 178.088 1 16.21 ? CAD HEM 1001 A 1 HETATM 35 C CBD HEM . . . E 5 176.026 169.818 177.447 1 16.25 ? CBD HEM 1001 A 1 HETATM 36 C CGD HEM . . . E 5 176.7 171.136 177.164 1 16.29 ? CGD HEM 1001 A 1 HETATM 37 O O1D HEM . . . E 5 176.54 172.072 177.975 1 16.32 ? O1D HEM 1001 A 1 HETATM 38 O O2D HEM . . . E 5 177.381 171.319 176.121 1 16.32 ? O2D HEM 1001 A 1 HETATM 39 N NA HEM . . . E 5 174.76 166.855 182.467 1 16.22 ? NA HEM 1001 A 1 HETATM 40 N NB HEM . . . E 5 173.193 164.559 183.088 1 16.17 ? NB HEM 1001 A 1 HETATM 41 N NC HEM . . . E 5 171.866 164.745 180.587 1 16.2 ? NC HEM 1001 A 1 HETATM 42 N ND HEM . . . E 5 173.513 167.005 179.915 1 16.19 ? ND HEM 1001 A 1 HETATM 43 FE FE HEM . . . E 5 173.49 165.796 181.374 1 16.17 ? FE HEM 1001 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #