data_8F6G # _model_server_result.job_id A91m_ShygnyZYiPvpmdjPA _model_server_result.datetime_utc '2024-11-14 19:42:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f6g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":3101}' # _entry.id 8F6G # _exptl.entry_id 8F6G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.737 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[4-(2-aminoethyl)anilino]-5-chloro-3-methylpyrimidin-4(3H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.94 _cell.angle_gamma 90 _cell.entry_id 8F6G _cell.length_a 26.976 _cell.length_b 66.859 _cell.length_c 39.564 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F6G _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H15 Cl N4 O' _chem_comp.formula_weight 278.737 _chem_comp.id XHK _chem_comp.mon_nstd_flag . _chem_comp.name 6-[4-(2-aminoethyl)anilino]-5-chloro-3-methylpyrimidin-4(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N13 C12 XHK sing 376 n n C12 C11 XHK sing 377 n n C11 C10 XHK sing 378 n n C10 C14 XHK doub 379 n y C10 C09 XHK sing 380 n y C14 C15 XHK sing 381 n y C09 C08 XHK doub 382 n y C15 C07 XHK doub 383 n y C08 C07 XHK sing 384 n y C07 N06 XHK sing 385 n n N06 C05 XHK sing 386 n n N04 C05 XHK sing 387 n n N04 C03 XHK doub 388 n n C05 C16 XHK doub 389 n n C03 N02 XHK sing 390 n n C16 CL17 XHK sing 391 n n C16 C18 XHK sing 392 n n N02 C18 XHK sing 393 n n N02 C01 XHK sing 394 n n C18 O19 XHK doub 395 n n C01 H1 XHK sing 396 n n C01 H2 XHK sing 397 n n C01 H3 XHK sing 398 n n C03 H4 XHK sing 399 n n C08 H6 XHK sing 400 n n C09 H7 XHK sing 401 n n C11 H8 XHK sing 402 n n C11 H9 XHK sing 403 n n C12 H10 XHK sing 404 n n C12 H11 XHK sing 405 n n C14 H12 XHK sing 406 n n C15 H13 XHK sing 407 n n N06 H15 XHK sing 408 n n N13 H16 XHK sing 409 n n N13 H17 XHK sing 410 n n # _atom_sites.entry_id 8F6G _atom_sites.fract_transf_matrix[1][1] 0.03707 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009891 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014957 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XHK A 1 3101 3101 XHK BZ2 . C 3 HOH A 1 3201 61 HOH HOH . C 3 HOH A 2 3202 115 HOH HOH . C 3 HOH A 3 3203 39 HOH HOH . C 3 HOH A 4 3204 14 HOH HOH . C 3 HOH A 5 3205 46 HOH HOH . C 3 HOH A 6 3206 59 HOH HOH . C 3 HOH A 7 3207 112 HOH HOH . C 3 HOH A 8 3208 4 HOH HOH . C 3 HOH A 9 3209 96 HOH HOH . C 3 HOH A 10 3210 89 HOH HOH . C 3 HOH A 11 3211 36 HOH HOH . C 3 HOH A 12 3212 98 HOH HOH . C 3 HOH A 13 3213 6 HOH HOH . C 3 HOH A 14 3214 54 HOH HOH . C 3 HOH A 15 3215 49 HOH HOH . C 3 HOH A 16 3216 93 HOH HOH . C 3 HOH A 17 3217 19 HOH HOH . C 3 HOH A 18 3218 56 HOH HOH . C 3 HOH A 19 3219 105 HOH HOH . C 3 HOH A 20 3220 33 HOH HOH . C 3 HOH A 21 3221 24 HOH HOH . C 3 HOH A 22 3222 66 HOH HOH . C 3 HOH A 23 3223 5 HOH HOH . C 3 HOH A 24 3224 47 HOH HOH . C 3 HOH A 25 3225 16 HOH HOH . C 3 HOH A 26 3226 18 HOH HOH . C 3 HOH A 27 3227 22 HOH HOH . C 3 HOH A 28 3228 97 HOH HOH . C 3 HOH A 29 3229 58 HOH HOH . C 3 HOH A 30 3230 53 HOH HOH . C 3 HOH A 31 3231 40 HOH HOH . C 3 HOH A 32 3232 43 HOH HOH . C 3 HOH A 33 3233 25 HOH HOH . C 3 HOH A 34 3234 83 HOH HOH . C 3 HOH A 35 3235 7 HOH HOH . C 3 HOH A 36 3236 3 HOH HOH . C 3 HOH A 37 3237 31 HOH HOH . C 3 HOH A 38 3238 110 HOH HOH . C 3 HOH A 39 3239 35 HOH HOH . C 3 HOH A 40 3240 92 HOH HOH . C 3 HOH A 41 3241 27 HOH HOH . C 3 HOH A 42 3242 32 HOH HOH . C 3 HOH A 43 3243 17 HOH HOH . C 3 HOH A 44 3244 84 HOH HOH . C 3 HOH A 45 3245 2 HOH HOH . C 3 HOH A 46 3246 60 HOH HOH . C 3 HOH A 47 3247 29 HOH HOH . C 3 HOH A 48 3248 48 HOH HOH . C 3 HOH A 49 3249 11 HOH HOH . C 3 HOH A 50 3250 68 HOH HOH . C 3 HOH A 51 3251 26 HOH HOH . C 3 HOH A 52 3252 50 HOH HOH . C 3 HOH A 53 3253 15 HOH HOH . C 3 HOH A 54 3254 79 HOH HOH . C 3 HOH A 55 3255 82 HOH HOH . C 3 HOH A 56 3256 91 HOH HOH . C 3 HOH A 57 3257 8 HOH HOH . C 3 HOH A 58 3258 12 HOH HOH . C 3 HOH A 59 3259 107 HOH HOH . C 3 HOH A 60 3260 23 HOH HOH . C 3 HOH A 61 3261 10 HOH HOH . C 3 HOH A 62 3262 1 HOH HOH . C 3 HOH A 63 3263 64 HOH HOH . C 3 HOH A 64 3264 9 HOH HOH . C 3 HOH A 65 3265 45 HOH HOH . C 3 HOH A 66 3266 80 HOH HOH . C 3 HOH A 67 3267 67 HOH HOH . C 3 HOH A 68 3268 41 HOH HOH . C 3 HOH A 69 3269 30 HOH HOH . C 3 HOH A 70 3270 57 HOH HOH . C 3 HOH A 71 3271 100 HOH HOH . C 3 HOH A 72 3272 70 HOH HOH . C 3 HOH A 73 3273 51 HOH HOH . C 3 HOH A 74 3274 21 HOH HOH . C 3 HOH A 75 3275 101 HOH HOH . C 3 HOH A 76 3276 88 HOH HOH . C 3 HOH A 77 3277 71 HOH HOH . C 3 HOH A 78 3278 37 HOH HOH . C 3 HOH A 79 3279 121 HOH HOH . C 3 HOH A 80 3280 55 HOH HOH . C 3 HOH A 81 3281 111 HOH HOH . C 3 HOH A 82 3282 87 HOH HOH . C 3 HOH A 83 3283 52 HOH HOH . C 3 HOH A 84 3284 63 HOH HOH . C 3 HOH A 85 3285 13 HOH HOH . C 3 HOH A 86 3286 95 HOH HOH . C 3 HOH A 87 3287 86 HOH HOH . C 3 HOH A 88 3288 109 HOH HOH . C 3 HOH A 89 3289 28 HOH HOH . C 3 HOH A 90 3290 76 HOH HOH . C 3 HOH A 91 3291 116 HOH HOH . C 3 HOH A 92 3292 69 HOH HOH . C 3 HOH A 93 3293 42 HOH HOH . C 3 HOH A 94 3294 118 HOH HOH . C 3 HOH A 95 3295 103 HOH HOH . C 3 HOH A 96 3296 120 HOH HOH . C 3 HOH A 97 3297 114 HOH HOH . C 3 HOH A 98 3298 62 HOH HOH . C 3 HOH A 99 3299 102 HOH HOH . C 3 HOH A 100 3300 113 HOH HOH . C 3 HOH A 101 3301 72 HOH HOH . C 3 HOH A 102 3302 119 HOH HOH . C 3 HOH A 103 3303 34 HOH HOH . C 3 HOH A 104 3304 74 HOH HOH . C 3 HOH A 105 3305 44 HOH HOH . C 3 HOH A 106 3306 122 HOH HOH . C 3 HOH A 107 3307 104 HOH HOH . C 3 HOH A 108 3308 85 HOH HOH . C 3 HOH A 109 3309 77 HOH HOH . C 3 HOH A 110 3310 94 HOH HOH . C 3 HOH A 111 3311 90 HOH HOH . C 3 HOH A 112 3312 117 HOH HOH . C 3 HOH A 113 3313 99 HOH HOH . C 3 HOH A 114 3314 38 HOH HOH . C 3 HOH A 115 3315 81 HOH HOH . C 3 HOH A 116 3316 75 HOH HOH . C 3 HOH A 117 3317 20 HOH HOH . C 3 HOH A 118 3318 73 HOH HOH . C 3 HOH A 119 3319 106 HOH HOH . C 3 HOH A 120 3320 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 XHK . . . B 2 5.436 -4.923 5.91 1 23.26 ? C01 XHK 3101 A 1 HETATM 2 C C03 XHK . . . B 2 5.442 -3.979 3.721 1 25.94 ? C03 XHK 3101 A 1 HETATM 3 C C05 XHK . . . B 2 6.439 -1.968 3.208 1 17.84 ? C05 XHK 3101 A 1 HETATM 4 C C07 XHK . . . B 2 6.308 -0.97 0.912 1 21.66 ? C07 XHK 3101 A 1 HETATM 5 C C08 XHK . . . B 2 5.434 0.011 0.473 1 22.23 ? C08 XHK 3101 A 1 HETATM 6 C C09 XHK . . . B 2 4.966 -0.033 -0.828 1 41.63 ? C09 XHK 3101 A 1 HETATM 7 C C10 XHK . . . B 2 5.372 -1.052 -1.675 1 27.81 ? C10 XHK 3101 A 1 HETATM 8 C C11 XHK . . . B 2 4.843 -1.086 -3.103 1 33.87 ? C11 XHK 3101 A 1 HETATM 9 C C12 XHK . . . B 2 3.62 -0.191 -3.267 1 42.45 ? C12 XHK 3101 A 1 HETATM 10 C C14 XHK . . . B 2 6.244 -2.034 -1.233 1 26 ? C14 XHK 3101 A 1 HETATM 11 C C15 XHK . . . B 2 6.716 -1.991 0.067 1 23.66 ? C15 XHK 3101 A 1 HETATM 12 C C16 XHK . . . B 2 6.834 -1.819 4.515 1 18.24 ? C16 XHK 3101 A 1 HETATM 13 C C18 XHK . . . B 2 6.491 -2.818 5.412 1 18.44 ? C18 XHK 3101 A 1 HETATM 14 N N02 XHK . . . B 2 5.806 -3.869 4.986 1 21.75 ? N02 XHK 3101 A 1 HETATM 15 N N04 XHK . . . B 2 5.758 -3.04 2.848 1 19.37 ? N04 XHK 3101 A 1 HETATM 16 N N06 XHK . . . B 2 6.8 -0.927 2.269 1 19.48 ? N06 XHK 3101 A 1 HETATM 17 N N13 XHK . . . B 2 2.524 -0.939 -3.856 1 48.85 ? N13 XHK 3101 A 1 HETATM 18 O O19 XHK . . . B 2 6.808 -2.73 6.551 1 21.54 ? O19 XHK 3101 A 1 HETATM 19 CL CL17 XHK . . . B 2 7.752 -0.355 4.958 1 28.27 ? CL17 XHK 3101 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 703 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #