data_8F6S
#
_model_server_result.job_id            QwJ9-neqqkVgLN7C-11dUg 
_model_server_result.datetime_utc      '2025-07-14 08:47:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8f6s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":901}' 
#
_entry.id    8F6S 
#
_exptl.entry_id    8F6S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              1060.876 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl (2S,3R,4S)-2,3,4-trihydroxy-5-[(1R,3R,3aS,13R)-1-hydroxy-10,11-dimethyl-3-{3-[(5-methyl-1,3,4-thiadiazol-2-yl)carbamoyl]phenyl}-4,6-dioxo-2,3,5,6-tetrahydro-1H-benzo[g]pyrrolo[2,1-e]pteridin-8(4H)-yl]pentyl dihydrogen diphosphate (non-preferred name)' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8F6S 
_cell.length_a            119.016 
_cell.length_b            179.591 
_cell.length_c            232.891 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8F6S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C40 H46 N12 O17 P2 S' 
_chem_comp.formula_weight    1060.876 
_chem_comp.id                XHT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl (2S,3R,4S)-2,3,4-trihydroxy-5-[(1R,3R,3aS,13R)-1-hydroxy-10,11-dimethyl-3-{3-[(5-methyl-1,3,4-thiadiazol-2-yl)carbamoyl]phenyl}-4,6-dioxo-2,3,5,6-tetrahydro-1H-benzo[g]pyrrolo[2,1-e]pteridin-8(4H)-yl]pentyl dihydrogen diphosphate (non-preferred name)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 XHT doub 374 n y 
N1 N2 XHT sing 375 n y 
C1 C2 XHT sing 376 n n 
C2 S1 XHT sing 377 n y 
N2 C3 XHT doub 378 n y 
C16 C15 XHT sing 379 n n 
O1 C4 XHT doub 380 n n 
O2 C12 XHT sing 381 n n 
C3 S1 XHT sing 382 n y 
C3 N3 XHT sing 383 n n 
C15 C14 XHT doub 384 n y 
C15 C17 XHT sing 385 n y 
C14 C13 XHT sing 386 n y 
C12 C11 XHT sing 387 n n 
C12 N4 XHT sing 388 n n 
C4 N3 XHT sing 389 n n 
C4 C5 XHT sing 390 n n 
C11 C10 XHT sing 391 n n 
C18 C17 XHT sing 392 n n 
C17 C19 XHT doub 393 n y 
C13 N4 XHT sing 394 n n 
C13 C20 XHT doub 395 n y 
N4 C39 XHT sing 396 n n 
C40 C5 XHT doub 397 n y 
C40 C9 XHT sing 398 n y 
C5 C6 XHT sing 399 n y 
O17 C38 XHT doub 400 n n 
C10 C39 XHT sing 401 n n 
C10 C9 XHT sing 402 n n 
C19 C20 XHT sing 403 n y 
C20 N5 XHT sing 404 n n 
C39 C38 XHT sing 405 n n 
C39 C36 XHT sing 406 n n 
C9 C8 XHT doub 407 n y 
C38 N12 XHT sing 408 n n 
C6 C7 XHT doub 409 n y 
N5 C36 XHT sing 410 n n 
N5 C21 XHT sing 411 n n 
C36 N11 XHT doub 412 n n 
C8 C7 XHT sing 413 n y 
N12 C37 XHT sing 414 n n 
O3 C22 XHT sing 415 n n 
C21 C22 XHT sing 416 n n 
N11 C37 XHT sing 417 n n 
C37 O16 XHT doub 418 n n 
C22 C23 XHT sing 419 n n 
O14 C34 XHT sing 420 n n 
C34 C35 XHT sing 421 n n 
C34 C28 XHT sing 422 n n 
O11 P2 XHT doub 423 n n 
C23 C24 XHT sing 424 n n 
C23 O4 XHT sing 425 n n 
C24 O5 XHT sing 426 n n 
C24 C25 XHT sing 427 n n 
C29 N7 XHT doub 428 n y 
C29 N6 XHT sing 429 n y 
C35 O15 XHT sing 430 n n 
C35 C27 XHT sing 431 n n 
O10 P2 XHT sing 432 n n 
N7 C30 XHT sing 433 n y 
P2 O12 XHT sing 434 n n 
P2 O9 XHT sing 435 n n 
N6 C28 XHT sing 436 n n 
N6 C33 XHT sing 437 n y 
C28 O13 XHT sing 438 n n 
C25 O6 XHT sing 439 n n 
C30 C33 XHT doub 440 n y 
C30 C31 XHT sing 441 n y 
N8 C31 XHT sing 442 n n 
C33 N10 XHT sing 443 n y 
C31 N9 XHT doub 444 n y 
O12 C26 XHT sing 445 n n 
C27 O13 XHT sing 446 n n 
C27 C26 XHT sing 447 n n 
O9 P1 XHT sing 448 n n 
O6 P1 XHT sing 449 n n 
N10 C32 XHT doub 450 n y 
N9 C32 XHT sing 451 n y 
P1 O8 XHT doub 452 n n 
P1 O7 XHT sing 453 n n 
C14 H1 XHT sing 454 n n 
C6 H2 XHT sing 455 n n 
C11 H3 XHT sing 456 n n 
C11 H4 XHT sing 457 n n 
C7 H5 XHT sing 458 n n 
C8 H6 XHT sing 459 n n 
C10 H7 XHT sing 460 n n 
C12 H8 XHT sing 461 n n 
N3 H9 XHT sing 462 n n 
C1 H10 XHT sing 463 n n 
C1 H11 XHT sing 464 n n 
C1 H12 XHT sing 465 n n 
C16 H13 XHT sing 466 n n 
C16 H14 XHT sing 467 n n 
C16 H15 XHT sing 468 n n 
C18 H16 XHT sing 469 n n 
C18 H17 XHT sing 470 n n 
C18 H18 XHT sing 471 n n 
C19 H19 XHT sing 472 n n 
C21 H20 XHT sing 473 n n 
C21 H21 XHT sing 474 n n 
C22 H22 XHT sing 475 n n 
C23 H23 XHT sing 476 n n 
C24 H24 XHT sing 477 n n 
C25 H25 XHT sing 478 n n 
C25 H26 XHT sing 479 n n 
C26 H27 XHT sing 480 n n 
C26 H28 XHT sing 481 n n 
C27 H29 XHT sing 482 n n 
C28 H30 XHT sing 483 n n 
C29 H31 XHT sing 484 n n 
C32 H32 XHT sing 485 n n 
C34 H33 XHT sing 486 n n 
C35 H34 XHT sing 487 n n 
C40 H36 XHT sing 488 n n 
N12 H38 XHT sing 489 n n 
N8 H39 XHT sing 490 n n 
N8 H40 XHT sing 491 n n 
O10 H41 XHT sing 492 n n 
O14 H42 XHT sing 493 n n 
O15 H43 XHT sing 494 n n 
O2 H44 XHT sing 495 n n 
O3 H45 XHT sing 496 n n 
O4 H46 XHT sing 497 n n 
O5 H47 XHT sing 498 n n 
O7 H48 XHT sing 499 n n 
#
_atom_sites.entry_id                     8F6S 
_atom_sites.fract_transf_matrix[1][1]    0.008402 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005568 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004294 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 XHT A 1 901 901 XHT DRG . 
D 4 XHX A 1 902 1001 XHX DUB . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 XHT . . . C 3 -7.984 52.344 80.441 1 106.73 ? C4 XHT 901 A 1 
HETATM 2 C C14 XHT . . . C 3 -7.236 60.514 79.917 1 81.19 ? C14 XHT 901 A 1 
HETATM 3 C C5 XHT . . . C 3 -7.603 53.228 81.566 1 102.14 ? C5 XHT 901 A 1 
HETATM 4 C C6 XHT . . . C 3 -7.521 52.745 82.857 1 100.15 ? C6 XHT 901 A 1 
HETATM 5 C C11 XHT . . . C 3 -6.288 57.182 80.627 1 91.61 ? C11 XHT 901 A 1 
HETATM 6 C C7 XHT . . . C 3 -7.17 53.592 83.88 1 95.17 ? C7 XHT 901 A 1 
HETATM 7 C C8 XHT . . . C 3 -6.891 54.916 83.612 1 93.99 ? C8 XHT 901 A 1 
HETATM 8 C C9 XHT . . . C 3 -6.98 55.418 82.328 1 95.04 ? C9 XHT 901 A 1 
HETATM 9 C C10 XHT . . . C 3 -6.688 56.873 82.061 1 93.54 ? C10 XHT 901 A 1 
HETATM 10 C C12 XHT . . . C 3 -7.547 57.844 80.113 1 96.02 ? C12 XHT 901 A 1 
HETATM 11 C C13 XHT . . . C 3 -7.322 59.909 81.149 1 81.9 ? C13 XHT 901 A 1 
HETATM 12 N N1 XHT . . . C 3 -8.983 49.699 77.616 1 108.22 ? N1 XHT 901 A 1 
HETATM 13 N N2 XHT . . . C 3 -8.135 50.412 78.438 1 103.36 ? N2 XHT 901 A 1 
HETATM 14 C C3 XHT . . . C 3 -8.42 50.196 79.668 1 109.73 ? C3 XHT 901 A 1 
HETATM 15 N N3 XHT . . . C 3 -8.022 51.015 80.641 1 108.39 ? N3 XHT 901 A 1 
HETATM 16 C C1 XHT . . . C 3 -10.081 47.514 77.557 1 118.37 ? C1 XHT 901 A 1 
HETATM 17 C C15 XHT . . . C 3 -6.637 61.734 79.794 1 79.19 ? C15 XHT 901 A 1 
HETATM 18 C C16 XHT . . . C 3 -6.527 62.409 78.462 1 71.84 ? C16 XHT 901 A 1 
HETATM 19 C C17 XHT . . . C 3 -6.11 62.367 80.954 1 78.98 ? C17 XHT 901 A 1 
HETATM 20 C C18 XHT . . . C 3 -5.45 63.703 80.824 1 72.11 ? C18 XHT 901 A 1 
HETATM 21 C C19 XHT . . . C 3 -6.211 61.752 82.169 1 80.31 ? C19 XHT 901 A 1 
HETATM 22 C C2 XHT . . . C 3 -9.469 48.694 78.227 1 114.01 ? C2 XHT 901 A 1 
HETATM 23 C C20 XHT . . . C 3 -6.814 60.508 82.271 1 83.35 ? C20 XHT 901 A 1 
HETATM 24 C C21 XHT . . . C 3 -6.383 60.478 84.711 1 74.52 ? C21 XHT 901 A 1 
HETATM 25 C C22 XHT . . . C 3 -7.359 61.372 85.4 1 75.5 ? C22 XHT 901 A 1 
HETATM 26 C C23 XHT . . . C 3 -6.883 61.919 86.743 1 71.58 ? C23 XHT 901 A 1 
HETATM 27 C C24 XHT . . . C 3 -7.02 63.418 86.934 1 69.08 ? C24 XHT 901 A 1 
HETATM 28 C C25 XHT . . . C 3 -6.471 63.863 88.262 1 68.39 ? C25 XHT 901 A 1 
HETATM 29 C C26 XHT . . . C 3 -5.994 70.272 88.475 1 62.69 ? C26 XHT 901 A 1 
HETATM 30 C C27 XHT . . . C 3 -6.758 71.559 88.549 1 62.24 ? C27 XHT 901 A 1 
HETATM 31 C C28 XHT . . . C 3 -6.037 73.636 87.935 1 65.37 ? C28 XHT 901 A 1 
HETATM 32 C C29 XHT . . . C 3 -3.679 74.248 87.292 1 64.96 ? C29 XHT 901 A 1 
HETATM 33 C C30 XHT . . . C 3 -3.523 76.176 88.128 1 65.18 ? C30 XHT 901 A 1 
HETATM 34 C C31 XHT . . . C 3 -3.173 77.448 88.579 1 66.28 ? C31 XHT 901 A 1 
HETATM 35 C C32 XHT . . . C 3 -5.285 77.584 89.469 1 64.16 ? C32 XHT 901 A 1 
HETATM 36 C C33 XHT . . . C 3 -4.784 75.738 88.422 1 63.67 ? C33 XHT 901 A 1 
HETATM 37 C C34 XHT . . . C 3 -6.36 72.893 86.663 1 63.78 ? C34 XHT 901 A 1 
HETATM 38 C C35 XHT . . . C 3 -7.439 72.004 87.253 1 64.87 ? C35 XHT 901 A 1 
HETATM 39 C C36 XHT . . . C 3 -7.617 58.73 83.608 1 80.54 ? C36 XHT 901 A 1 
HETATM 40 C C37 XHT . . . C 3 -8.919 57.457 84.856 1 80.93 ? C37 XHT 901 A 1 
HETATM 41 C C38 XHT . . . C 3 -9.155 57.212 82.565 1 82.98 ? C38 XHT 901 A 1 
HETATM 42 C C39 XHT . . . C 3 -7.825 57.884 82.398 1 85.46 ? C39 XHT 901 A 1 
HETATM 43 C C40 XHT . . . C 3 -7.332 54.561 81.302 1 97.76 ? C40 XHT 901 A 1 
HETATM 44 N N10 XHT . . . C 3 -5.725 76.401 89.091 1 62.37 ? N10 XHT 901 A 1 
HETATM 45 N N11 XHT . . . C 3 -8.069 58.421 84.761 1 78.68 ? N11 XHT 901 A 1 
HETATM 46 N N12 XHT . . . C 3 -9.524 56.897 83.795 1 81.41 ? N12 XHT 901 A 1 
HETATM 47 N N4 XHT . . . C 3 -7.931 58.699 81.203 1 86.96 ? N4 XHT 901 A 1 
HETATM 48 N N5 XHT . . . C 3 -6.952 59.864 83.504 1 79.07 ? N5 XHT 901 A 1 
HETATM 49 N N6 XHT . . . C 3 -4.878 74.494 87.884 1 65.93 ? N6 XHT 901 A 1 
HETATM 50 N N7 XHT . . . C 3 -2.834 75.227 87.413 1 63.85 ? N7 XHT 901 A 1 
HETATM 51 N N8 XHT . . . C 3 -1.992 77.997 88.374 1 67.9 ? N8 XHT 901 A 1 
HETATM 52 N N9 XHT . . . C 3 -4.092 78.136 89.271 1 62.14 ? N9 XHT 901 A 1 
HETATM 53 O O1 XHT . . . C 3 -8.248 52.807 79.351 1 112.12 ? O1 XHT 901 A 1 
HETATM 54 O O10 XHT . . . C 3 -7.687 67.195 87.392 1 59.71 ? O10 XHT 901 A 1 
HETATM 55 O O11 XHT . . . C 3 -5.468 68.286 86.813 1 57.04 ? O11 XHT 901 A 1 
HETATM 56 O O12 XHT . . . C 3 -6.915 69.207 88.541 1 69.06 ? O12 XHT 901 A 1 
HETATM 57 O O13 XHT . . . C 3 -5.81 72.603 88.841 1 62.6 ? O13 XHT 901 A 1 
HETATM 58 O O14 XHT . . . C 3 -6.88 73.772 85.706 1 60.73 ? O14 XHT 901 A 1 
HETATM 59 O O15 XHT . . . C 3 -8.523 72.868 87.545 1 68.29 ? O15 XHT 901 A 1 
HETATM 60 O O16 XHT . . . C 3 -9.185 57.04 85.946 1 75.13 ? O16 XHT 901 A 1 
HETATM 61 O O17 XHT . . . C 3 -9.875 56.983 81.62 1 87.25 ? O17 XHT 901 A 1 
HETATM 62 O O2 XHT . . . C 3 -8.549 56.896 79.952 1 92.48 ? O2 XHT 901 A 1 
HETATM 63 O O3 XHT . . . C 3 -7.556 62.426 84.555 1 76.23 ? O3 XHT 901 A 1 
HETATM 64 O O4 XHT . . . C 3 -5.551 61.656 86.911 1 73.66 ? O4 XHT 901 A 1 
HETATM 65 O O5 XHT . . . C 3 -8.401 63.723 86.91 1 74.94 ? O5 XHT 901 A 1 
HETATM 66 O O6 XHT . . . C 3 -7.043 65.106 88.691 1 70.88 ? O6 XHT 901 A 1 
HETATM 67 O O7 XHT . . . C 3 -7.218 66.268 90.853 1 70.61 ? O7 XHT 901 A 1 
HETATM 68 O O8 XHT . . . C 3 -5.072 65.217 90.174 1 56.57 ? O8 XHT 901 A 1 
HETATM 69 O O9 XHT . . . C 3 -5.841 67.153 88.953 1 59.14 ? O9 XHT 901 A 1 
HETATM 70 P P1 XHT . . . C 3 -6.287 65.914 89.787 1 65.51 ? P1 XHT 901 A 1 
HETATM 71 P P2 XHT . . . C 3 -6.492 67.928 87.778 1 63.25 ? P2 XHT 901 A 1 
HETATM 72 S S1 XHT . . . C 3 -9.336 48.806 79.923 1 124.16 ? S1 XHT 901 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           72 
#