data_8F6Z # _model_server_result.job_id seOtOULjodpb9k2Z1nAbGg _model_server_result.datetime_utc '2025-01-07 21:10:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f6z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":501}' # _entry.id 8F6Z # _exptl.entry_id 8F6Z _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 290.399 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2,2'-[(1,4-DIOXOBUTANE-1,4-DIYL)BIS(OXY)]BIS(N,N,N-TRIMETHYLETHANAMINIUM)" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8F6Z _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F6Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 L N N ? 9 T N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide 7 oligosaccharide 8 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 5 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 5 5 4 MAN MAN C1 O1 . O6 HO6 . sing 5 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 7 ? 6 4 3 MAN BMA C1 O1 . O6 HO6 . sing 8 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 9 ? 8 2 1 NAG NAG C1 O1 . O4 HO4 . sing 10 ? 8 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n F NAG 1 F 1 NAG A 501 NAG 5 n F NAG 2 F 2 NAG A 502 NAG 5 n F BMA 3 F 3 BMA A 503 BMA 5 n F MAN 4 F 4 MAN A 504 MAN 5 n F MAN 5 F 5 MAN A 505 MAN 6 n G NAG 1 G 1 NAG B 501 NAG 6 n G NAG 2 G 2 NAG B 502 NAG 6 n G BMA 3 G 3 BMA B 503 BMA 6 n G MAN 4 G 4 MAN B 504 MAN 7 n H NAG 1 H 1 NAG B 509 NAG 7 n H NAG 2 H 2 NAG B 510 NAG 8 n I NAG 1 I 1 NAG C 501 NAG 8 n I NAG 2 I 2 NAG C 502 NAG 8 n I BMA 3 I 3 BMA C 503 BMA 5 n J NAG 1 J 1 NAG D 501 NAG 5 n J NAG 2 J 2 NAG D 502 NAG 5 n J BMA 3 J 3 BMA D 503 BMA 5 n J MAN 4 J 4 MAN D 504 MAN 5 n J MAN 5 J 5 MAN D 505 MAN 5 n K NAG 1 K 1 NAG E 502 NAG 5 n K NAG 2 K 2 NAG E 503 NAG 5 n K BMA 3 K 3 BMA E 504 BMA 5 n K MAN 4 K 4 MAN E 505 MAN 5 n K MAN 5 K 5 MAN E 506 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 128 A CYS 128 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 192 A CYS 192 1_555 A SG CYS 193 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 B SG CYS 130 B CYS 130 1_555 B SG CYS 144 B CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 C SG CYS 128 C CYS 128 1_555 C SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 D SG CYS 128 D CYS 128 1_555 D SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf6 D SG CYS 192 D CYS 192 1_555 D SG CYS 193 D CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf7 E SG CYS 128 E CYS 128 1_555 E SG CYS 142 E CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 141 A ASN 141 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 B ND2 ASN 70 B ASN 70 1_555 N C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale3 B ND2 ASN 143 B ASN 143 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale4 B ND2 ASN 208 B ASN 208 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale5 C ND2 ASN 141 C ASN 141 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale6 D ND2 ASN 141 D ASN 141 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale7 E ND2 ASN 68 E ASN 68 1_555 W C1 NAG . E NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale8 E ND2 ASN 141 E ASN 141 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale9 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale10 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale11 F O6 BMA . F BMA 3 1_555 F C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale12 F O6 MAN . F MAN 4 1_555 F C1 MAN . F MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale13 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale14 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale15 G O6 BMA . G BMA 3 1_555 G C1 MAN . G MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale16 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale17 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale18 I O4 NAG . I NAG 2 1_555 I C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale19 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale20 J O4 NAG . J NAG 2 1_555 J C1 BMA . J BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale21 J O6 BMA . J BMA 3 1_555 J C1 MAN . J MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale22 J O6 MAN . J MAN 4 1_555 J C1 MAN . J MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale23 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale24 K O4 NAG . K NAG 2 1_555 K C1 BMA . K BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale25 K O6 BMA . K BMA 3 1_555 K C1 MAN . K MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale26 K O6 MAN . K MAN 4 1_555 K C1 MAN . K MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C14 H30 N2 O4 2' _chem_comp.formula_weight 290.399 _chem_comp.id SCK _chem_comp.mon_nstd_flag . _chem_comp.name "2,2'-[(1,4-DIOXOBUTANE-1,4-DIYL)BIS(OXY)]BIS(N,N,N-TRIMETHYLETHANAMINIUM)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SUCCINYLDICHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O13 C12 SCK doub 593 n n C12 O14 SCK sing 594 n n C12 C11 SCK sing 595 n n O14 C15 SCK sing 596 n n C15 C16 SCK sing 597 n n C15 H151 SCK sing 598 n n C15 H152 SCK sing 599 n n C16 N17 SCK sing 600 n n C16 H161 SCK sing 601 n n C16 H162 SCK sing 602 n n N17 C20 SCK sing 603 n n N17 C19 SCK sing 604 n n N17 C18 SCK sing 605 n n C20 H201 SCK sing 606 n n C20 H202 SCK sing 607 n n C20 H203 SCK sing 608 n n C19 H191 SCK sing 609 n n C19 H192 SCK sing 610 n n C19 H193 SCK sing 611 n n C18 H181 SCK sing 612 n n C18 H182 SCK sing 613 n n C18 H183 SCK sing 614 n n C11 C6 SCK sing 615 n n C11 H111 SCK sing 616 n n C11 H112 SCK sing 617 n n C6 C5 SCK sing 618 n n C6 H61 SCK sing 619 n n C6 H62 SCK sing 620 n n C5 O7 SCK doub 621 n n C5 O4 SCK sing 622 n n O4 C3 SCK sing 623 n n C3 C2 SCK sing 624 n n C3 H31 SCK sing 625 n n C3 H32 SCK sing 626 n n C2 N1 SCK sing 627 n n C2 H21 SCK sing 628 n n C2 H22 SCK sing 629 n n N1 C8 SCK sing 630 n n N1 C9 SCK sing 631 n n N1 C10 SCK sing 632 n n C8 H81 SCK sing 633 n n C8 H82 SCK sing 634 n n C8 H83 SCK sing 635 n n C9 H91 SCK sing 636 n n C9 H92 SCK sing 637 n n C9 H93 SCK sing 638 n n C10 H101 SCK sing 639 n n C10 H102 SCK sing 640 n n C10 H103 SCK sing 641 n n # _atom_sites.entry_id 8F6Z _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 9 SCK A 1 501 705 SCK SCK . M 10 CLR A 1 502 906 CLR CLR . N 11 NAG B 1 601 508 NAG NAG . O 12 POV B 1 602 511 POV POV . P 13 DD9 B 1 603 704 DD9 DD9 . Q 10 CLR C 1 501 504 CLR CLR . R 12 POV C 1 502 801 POV POV . S 12 POV C 1 503 901 POV POV . T 9 SCK D 1 501 703 SCK SCK . U 12 POV D 1 502 701 POV POV . V 10 CLR D 1 503 704 CLR CLR . W 11 NAG E 1 501 501 NAG NAG . X 12 POV E 1 502 904 POV POV . Y 14 HOH B 1 701 17 HOH HOH . Y 14 HOH B 2 702 18 HOH HOH . Z 14 HOH D 1 601 21 HOH HOH . Z 14 HOH D 2 602 19 HOH HOH . AA 14 HOH E 1 601 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O13 SCK . . . T 9 128.284 159.084 114.679 1 46.59 ? O13 SCK 501 D 1 HETATM 2 C C12 SCK . . . T 9 127.409 158.271 114.562 1 46.59 ? C12 SCK 501 D 1 HETATM 3 O O14 SCK . . . T 9 127.172 157.308 115.451 1 46.59 ? O14 SCK 501 D 1 HETATM 4 C C15 SCK . . . T 9 128.322 156.808 116.183 1 46.59 ? C15 SCK 501 D 1 HETATM 5 C C16 SCK . . . T 9 127.896 156.086 117.435 1 46.59 ? C16 SCK 501 D 1 HETATM 6 N N17 SCK . . . T 9 127.727 154.595 117.309 1 46.59 ? N17 SCK 501 D 1 HETATM 7 C C20 SCK . . . T 9 129.073 153.96 117.194 1 46.59 ? C20 SCK 501 D 1 HETATM 8 C C19 SCK . . . T 9 126.927 154.252 116.096 1 46.59 ? C19 SCK 501 D 1 HETATM 9 C C18 SCK . . . T 9 127.033 154.051 118.513 1 46.59 ? C18 SCK 501 D 1 HETATM 10 C C11 SCK . . . T 9 126.411 158.252 113.442 1 46.59 ? C11 SCK 501 D 1 HETATM 11 C C6 SCK . . . T 9 125.361 157.162 113.558 1 46.59 ? C6 SCK 501 D 1 HETATM 12 C C5 SCK . . . T 9 124.069 157.668 114.128 1 46.59 ? C5 SCK 501 D 1 HETATM 13 O O7 SCK . . . T 9 123.829 157.751 115.302 1 46.59 ? O7 SCK 501 D 1 HETATM 14 O O4 SCK . . . T 9 123.22 158.046 113.168 1 46.59 ? O4 SCK 501 D 1 HETATM 15 C C3 SCK . . . T 9 122.74 159.415 113.24 1 46.59 ? C3 SCK 501 D 1 HETATM 16 C C2 SCK . . . T 9 121.465 159.546 114.031 1 46.59 ? C2 SCK 501 D 1 HETATM 17 N N1 SCK . . . T 9 120.203 159.712 113.232 1 46.59 ? N1 SCK 501 D 1 HETATM 18 C C8 SCK . . . T 9 119.019 159.663 114.143 1 46.59 ? C8 SCK 501 D 1 HETATM 19 C C9 SCK . . . T 9 120.227 161.045 112.555 1 46.59 ? C9 SCK 501 D 1 HETATM 20 C C10 SCK . . . T 9 120.079 158.637 112.199 1 46.59 ? C10 SCK 501 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 20 #