data_8F7H # _model_server_result.job_id GJppN-0JppnvC1_yH2uJ0g _model_server_result.datetime_utc '2024-12-27 03:02:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f7h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8F7H # _exptl.entry_id 8F7H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8F7H _cell.length_a 75.736 _cell.length_b 83.722 _cell.length_c 86.379 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F7H _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8F7H _atom_sites.fract_transf_matrix[1][1] 0.013204 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011944 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011577 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 501 GOL LIG . C 3 HOH A 1 601 33 HOH HOH . C 3 HOH A 2 602 136 HOH HOH . C 3 HOH A 3 603 86 HOH HOH . C 3 HOH A 4 604 46 HOH HOH . C 3 HOH A 5 605 102 HOH HOH . C 3 HOH A 6 606 120 HOH HOH . C 3 HOH A 7 607 148 HOH HOH . C 3 HOH A 8 608 45 HOH HOH . C 3 HOH A 9 609 181 HOH HOH . C 3 HOH A 10 610 30 HOH HOH . C 3 HOH A 11 611 99 HOH HOH . C 3 HOH A 12 612 143 HOH HOH . C 3 HOH A 13 613 35 HOH HOH . C 3 HOH A 14 614 112 HOH HOH . C 3 HOH A 15 615 31 HOH HOH . C 3 HOH A 16 616 82 HOH HOH . C 3 HOH A 17 617 146 HOH HOH . C 3 HOH A 18 618 39 HOH HOH . C 3 HOH A 19 619 80 HOH HOH . C 3 HOH A 20 620 56 HOH HOH . C 3 HOH A 21 621 51 HOH HOH . C 3 HOH A 22 622 130 HOH HOH . C 3 HOH A 23 623 97 HOH HOH . C 3 HOH A 24 624 110 HOH HOH . C 3 HOH A 25 625 34 HOH HOH . C 3 HOH A 26 626 44 HOH HOH . C 3 HOH A 27 627 125 HOH HOH . C 3 HOH A 28 628 42 HOH HOH . C 3 HOH A 29 629 53 HOH HOH . C 3 HOH A 30 630 182 HOH HOH . C 3 HOH A 31 631 116 HOH HOH . C 3 HOH A 32 632 142 HOH HOH . C 3 HOH A 33 633 59 HOH HOH . C 3 HOH A 34 634 107 HOH HOH . C 3 HOH A 35 635 23 HOH HOH . C 3 HOH A 36 636 48 HOH HOH . C 3 HOH A 37 637 119 HOH HOH . C 3 HOH A 38 638 26 HOH HOH . C 3 HOH A 39 639 155 HOH HOH . C 3 HOH A 40 640 47 HOH HOH . C 3 HOH A 41 641 9 HOH HOH . C 3 HOH A 42 642 10 HOH HOH . C 3 HOH A 43 643 13 HOH HOH . C 3 HOH A 44 644 66 HOH HOH . C 3 HOH A 45 645 25 HOH HOH . C 3 HOH A 46 646 62 HOH HOH . C 3 HOH A 47 647 6 HOH HOH . C 3 HOH A 48 648 165 HOH HOH . C 3 HOH A 49 649 19 HOH HOH . C 3 HOH A 50 650 177 HOH HOH . C 3 HOH A 51 651 104 HOH HOH . C 3 HOH A 52 652 98 HOH HOH . C 3 HOH A 53 653 57 HOH HOH . C 3 HOH A 54 654 122 HOH HOH . C 3 HOH A 55 655 50 HOH HOH . C 3 HOH A 56 656 54 HOH HOH . C 3 HOH A 57 657 139 HOH HOH . C 3 HOH A 58 658 84 HOH HOH . C 3 HOH A 59 659 91 HOH HOH . C 3 HOH A 60 660 172 HOH HOH . C 3 HOH A 61 661 149 HOH HOH . C 3 HOH A 62 662 144 HOH HOH . C 3 HOH A 63 663 128 HOH HOH . C 3 HOH A 64 664 4 HOH HOH . C 3 HOH A 65 665 173 HOH HOH . C 3 HOH A 66 666 77 HOH HOH . C 3 HOH A 67 667 3 HOH HOH . C 3 HOH A 68 668 175 HOH HOH . C 3 HOH A 69 669 63 HOH HOH . C 3 HOH A 70 670 96 HOH HOH . C 3 HOH A 71 671 106 HOH HOH . C 3 HOH A 72 672 171 HOH HOH . C 3 HOH A 73 673 88 HOH HOH . C 3 HOH A 74 674 121 HOH HOH . C 3 HOH A 75 675 184 HOH HOH . C 3 HOH A 76 676 15 HOH HOH . C 3 HOH A 77 677 22 HOH HOH . C 3 HOH A 78 678 24 HOH HOH . C 3 HOH A 79 679 183 HOH HOH . C 3 HOH A 80 680 83 HOH HOH . C 3 HOH A 81 681 16 HOH HOH . C 3 HOH A 82 682 8 HOH HOH . C 3 HOH A 83 683 71 HOH HOH . C 3 HOH A 84 684 32 HOH HOH . C 3 HOH A 85 685 37 HOH HOH . C 3 HOH A 86 686 38 HOH HOH . C 3 HOH A 87 687 150 HOH HOH . C 3 HOH A 88 688 2 HOH HOH . C 3 HOH A 89 689 12 HOH HOH . C 3 HOH A 90 690 94 HOH HOH . C 3 HOH A 91 691 93 HOH HOH . C 3 HOH A 92 692 70 HOH HOH . C 3 HOH A 93 693 64 HOH HOH . C 3 HOH A 94 694 14 HOH HOH . C 3 HOH A 95 695 11 HOH HOH . C 3 HOH A 96 696 105 HOH HOH . C 3 HOH A 97 697 147 HOH HOH . C 3 HOH A 98 698 58 HOH HOH . C 3 HOH A 99 699 49 HOH HOH . C 3 HOH A 100 700 61 HOH HOH . C 3 HOH A 101 701 117 HOH HOH . C 3 HOH A 102 702 118 HOH HOH . C 3 HOH A 103 703 5 HOH HOH . C 3 HOH A 104 704 7 HOH HOH . C 3 HOH A 105 705 74 HOH HOH . C 3 HOH A 106 706 29 HOH HOH . C 3 HOH A 107 707 72 HOH HOH . C 3 HOH A 108 708 115 HOH HOH . C 3 HOH A 109 709 100 HOH HOH . C 3 HOH A 110 710 28 HOH HOH . C 3 HOH A 111 711 113 HOH HOH . C 3 HOH A 112 712 55 HOH HOH . C 3 HOH A 113 713 92 HOH HOH . C 3 HOH A 114 714 78 HOH HOH . C 3 HOH A 115 715 36 HOH HOH . C 3 HOH A 116 716 101 HOH HOH . C 3 HOH A 117 717 134 HOH HOH . C 3 HOH A 118 718 65 HOH HOH . C 3 HOH A 119 719 79 HOH HOH . C 3 HOH A 120 720 68 HOH HOH . C 3 HOH A 121 721 108 HOH HOH . C 3 HOH A 122 722 114 HOH HOH . C 3 HOH A 123 723 87 HOH HOH . C 3 HOH A 124 724 179 HOH HOH . C 3 HOH A 125 725 85 HOH HOH . C 3 HOH A 126 726 90 HOH HOH . C 3 HOH A 127 727 17 HOH HOH . C 3 HOH A 128 728 18 HOH HOH . C 3 HOH A 129 729 81 HOH HOH . C 3 HOH A 130 730 126 HOH HOH . C 3 HOH A 131 731 27 HOH HOH . C 3 HOH A 132 732 43 HOH HOH . C 3 HOH A 133 733 154 HOH HOH . C 3 HOH A 134 734 41 HOH HOH . C 3 HOH A 135 735 21 HOH HOH . C 3 HOH A 136 736 160 HOH HOH . C 3 HOH A 137 737 158 HOH HOH . C 3 HOH A 138 738 180 HOH HOH . C 3 HOH A 139 739 123 HOH HOH . C 3 HOH A 140 740 166 HOH HOH . C 3 HOH A 141 741 185 HOH HOH . C 3 HOH A 142 742 89 HOH HOH . C 3 HOH A 143 743 137 HOH HOH . C 3 HOH A 144 744 76 HOH HOH . C 3 HOH A 145 745 138 HOH HOH . C 3 HOH A 146 746 178 HOH HOH . C 3 HOH A 147 747 157 HOH HOH . C 3 HOH A 148 748 52 HOH HOH . C 3 HOH A 149 749 75 HOH HOH . C 3 HOH A 150 750 135 HOH HOH . C 3 HOH A 151 751 111 HOH HOH . C 3 HOH A 152 752 156 HOH HOH . C 3 HOH A 153 753 131 HOH HOH . C 3 HOH A 154 754 60 HOH HOH . C 3 HOH A 155 755 151 HOH HOH . C 3 HOH A 156 756 153 HOH HOH . C 3 HOH A 157 757 124 HOH HOH . C 3 HOH A 158 758 152 HOH HOH . C 3 HOH A 159 759 69 HOH HOH . C 3 HOH A 160 760 161 HOH HOH . C 3 HOH A 161 761 109 HOH HOH . C 3 HOH A 162 762 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 16.982 -31.159 1.91 1 51.24 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . B 2 16.816 -32.446 2.487 1 59.26 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . B 2 15.658 -30.61 1.458 1 49.82 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . B 2 14.813 -30.582 2.606 1 50.85 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . B 2 14.974 -31.373 0.357 1 50.41 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . B 2 13.753 -30.724 0.013 1 51.22 ? O3 GOL 501 A 1 HETATM 7 H H11 GOL . . . B 2 17.594 -31.22 1.137 1 61.6 ? H11 GOL 501 A 1 HETATM 8 H H12 GOL . . . B 2 17.382 -30.547 2.575 1 61.6 ? H12 GOL 501 A 1 HETATM 9 H HO1 GOL . . . B 2 17.558 -32.689 2.813 1 71.22 ? HO1 GOL 501 A 1 HETATM 10 H H2 GOL . . . B 2 15.812 -29.706 1.093 1 59.9 ? H2 GOL 501 A 1 HETATM 11 H HO2 GOL . . . B 2 14.027 -30.395 2.348 1 61.13 ? HO2 GOL 501 A 1 HETATM 12 H H31 GOL . . . B 2 14.789 -32.296 0.656 1 60.6 ? H31 GOL 501 A 1 HETATM 13 H H32 GOL . . . B 2 15.564 -31.415 -0.435 1 60.6 ? H32 GOL 501 A 1 HETATM 14 H HO3 GOL . . . B 2 13.301 -31.25 -0.472 1 61.57 ? HO3 GOL 501 A 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 14 #