data_8F7O # _model_server_result.job_id JJcVDXZbF3X2MBmXUi7oDw _model_server_result.datetime_utc '2025-02-05 06:58:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f7o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":801}' # _entry.id 8F7O # _exptl.entry_id 8F7O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.289 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-amino-5-chloro-N-[(1R)-1-(5-{[5-chloro-4-(trifluoromethyl)pyridin-2-yl]carbamoyl}-1,3-thiazol-2-yl)ethyl]pyrimidine-4-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8F7O _cell.length_a 86.918 _cell.length_b 121.998 _cell.length_c 57.797 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F7O _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H12 Cl2 F3 N7 O2 S' _chem_comp.formula_weight 506.289 _chem_comp.id QOP _chem_comp.mon_nstd_flag . _chem_comp.name 6-amino-5-chloro-N-[(1R)-1-(5-{[5-chloro-4-(trifluoromethyl)pyridin-2-yl]carbamoyl}-1,3-thiazol-2-yl)ethyl]pyrimidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms tovorafenib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 N17 QOP doub 275 n y C18 C19 QOP sing 276 n y N17 C16 QOP sing 277 n y CL32 C31 QOP sing 278 n n CL20 C19 QOP sing 279 n n O30 C07 QOP doub 280 n n C19 C21 QOP doub 281 n y C16 N15 QOP sing 282 n n C16 C26 QOP doub 283 n y O27 C14 QOP doub 284 n n N15 C14 QOP sing 285 n n C14 C13 QOP sing 286 n n S28 C13 QOP sing 287 n y S28 C10 QOP sing 288 n y F24 C22 QOP sing 289 n n C13 C12 QOP doub 290 n y C21 C26 QOP sing 291 n y C21 C22 QOP sing 292 n n C07 C06 QOP sing 293 n n C07 N08 QOP sing 294 n n C10 C09 QOP sing 295 n n C10 N11 QOP doub 296 n y C09 N08 QOP sing 297 n n C09 C29 QOP sing 298 n n C31 C06 QOP doub 299 n y C31 C02 QOP sing 300 n y C12 N11 QOP sing 301 n y N01 C02 QOP sing 302 n n C06 N05 QOP sing 303 n y C22 F25 QOP sing 304 n n C22 F23 QOP sing 305 n n C02 N03 QOP doub 306 n y N05 C04 QOP doub 307 n y N03 C04 QOP sing 308 n y C18 H1 QOP sing 309 n n C26 H2 QOP sing 310 n n C04 H3 QOP sing 311 n n C09 H4 QOP sing 312 n n C12 H5 QOP sing 313 n n C29 H6 QOP sing 314 n n C29 H7 QOP sing 315 n n C29 H8 QOP sing 316 n n N01 H9 QOP sing 317 n n N01 H10 QOP sing 318 n n N08 H11 QOP sing 319 n n N15 H12 QOP sing 320 n n # _atom_sites.entry_id 8F7O _atom_sites.fract_transf_matrix[1][1] 0.011505 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008197 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017302 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 QOP A 1 801 801 QOP MLN . D 2 QOP B 1 801 801 QOP MLN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 QOP . . . D 2 27.352 9.597 7.382 1 78.84 ? C10 QOP 801 B 1 HETATM 2 C C13 QOP . . . D 2 28.232 10.335 5.212 1 86.11 ? C13 QOP 801 B 1 HETATM 3 C C14 QOP . . . D 2 28.485 10.621 3.731 1 90.79 ? C14 QOP 801 B 1 HETATM 4 C C16 QOP . . . D 2 30.022 11.546 1.935 1 96.63 ? C16 QOP 801 B 1 HETATM 5 C C18 QOP . . . D 2 31.483 11.339 0.152 1 107.64 ? C18 QOP 801 B 1 HETATM 6 C C21 QOP . . . D 2 29.432 12.53 -0.167 1 100.13 ? C21 QOP 801 B 1 HETATM 7 C C22 QOP . . . D 2 28.465 13.323 -1.047 1 107.15 ? C22 QOP 801 B 1 HETATM 8 C C26 QOP . . . D 2 29.128 12.27 1.163 1 95.23 ? C26 QOP 801 B 1 HETATM 9 C C02 QOP . . . D 2 20.282 8.531 8.282 1 87.87 ? C02 QOP 801 B 1 HETATM 10 C C04 QOP . . . D 2 21.124 10.621 7.886 1 98.89 ? C04 QOP 801 B 1 HETATM 11 C C06 QOP . . . D 2 22.639 8.904 8.153 1 84.68 ? C06 QOP 801 B 1 HETATM 12 C C07 QOP . . . D 2 24.101 8.455 8.204 1 76.07 ? C07 QOP 801 B 1 HETATM 13 C C09 QOP . . . D 2 26.532 8.983 8.518 1 79.81 ? C09 QOP 801 B 1 HETATM 14 C C12 QOP . . . D 2 29.08 10.753 6.271 1 79.15 ? C12 QOP 801 B 1 HETATM 15 C C19 QOP . . . D 2 30.631 12.053 -0.675 1 104.96 ? C19 QOP 801 B 1 HETATM 16 C C29 QOP . . . D 2 27.151 9.393 9.849 1 87.27 ? C29 QOP 801 B 1 HETATM 17 C C31 QOP . . . D 2 21.573 8.024 8.342 1 81.98 ? C31 QOP 801 B 1 HETATM 18 F F23 QOP . . . D 2 29.032 14.517 -1.39 1 112.11 ? F23 QOP 801 B 1 HETATM 19 F F24 QOP . . . D 2 28.186 12.609 -2.177 1 111.62 ? F24 QOP 801 B 1 HETATM 20 F F25 QOP . . . D 2 27.308 13.554 -0.36 1 109.05 ? F25 QOP 801 B 1 HETATM 21 N N01 QOP . . . D 2 19.148 7.646 8.468 1 79.29 ? N01 QOP 801 B 1 HETATM 22 N N03 QOP . . . D 2 20.093 9.817 8.056 1 102.8 ? N03 QOP 801 B 1 HETATM 23 N N05 QOP . . . D 2 22.366 10.178 7.938 1 94.07 ? N05 QOP 801 B 1 HETATM 24 N N08 QOP . . . D 2 25.149 9.427 8.472 1 75 ? N08 QOP 801 B 1 HETATM 25 N N11 QOP . . . D 2 28.538 10.303 7.561 1 82.37 ? N11 QOP 801 B 1 HETATM 26 N N15 QOP . . . D 2 29.729 11.261 3.33 1 92.46 ? N15 QOP 801 B 1 HETATM 27 N N17 QOP . . . D 2 31.152 11.114 1.409 1 103.69 ? N17 QOP 801 B 1 HETATM 28 O O27 QOP . . . D 2 27.674 10.311 2.924 1 91.15 ? O27 QOP 801 B 1 HETATM 29 O O30 QOP . . . D 2 24.399 7.326 8.012 1 80.75 ? O30 QOP 801 B 1 HETATM 30 S S28 QOP . . . D 2 26.986 9.515 5.799 1 81.7 ? S28 QOP 801 B 1 HETATM 31 CL CL20 QOP . . . D 2 31.075 12.358 -2.377 1 115.01 ? CL20 QOP 801 B 1 HETATM 32 CL CL32 QOP . . . D 2 21.799 6.278 8.649 1 119.01 ? CL32 QOP 801 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #