data_8F7T # _model_server_result.job_id TJD8xi2RDVnogJNRz-WkJQ _model_server_result.datetime_utc '2024-12-26 23:52:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f7t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":603}' # _entry.id 8F7T # _exptl.entry_id 8F7T _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8F7T _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F7T _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N ? 4 V N N ? 4 W N N ? 4 X N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O6 _pdbx_entity_branch_link.leaving_atom_id_2 HO6 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n G NAG 1 I 1 NAG I 504 NAG 3 n G NAG 2 I 2 NAG I 505 NAG 3 n H NAG 1 K 1 NAG K 504 NAG 3 n H NAG 2 K 2 NAG K 505 NAG 3 n I NAG 1 L 1 NAG L 504 NAG 3 n I NAG 2 L 2 NAG L 505 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 87 A CYS 598 1_555 A SG CYS 93 A CYS 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 94 A CYS 605 1_555 C SG CYS 456 C CYS 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? disulf ? disulf3 B SG CYS 87 B CYS 598 1_555 B SG CYS 93 B CYS 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 B SG CYS 94 B CYS 605 1_555 F SG CYS 456 G CYS 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf5 C SG CYS 27 C CYS 56 1_555 C SG CYS 47 C CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 C SG CYS 92 C CYS 121 1_555 C SG CYS 172 C CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 C SG CYS 99 C CYS 128 1_555 C SG CYS 163 C CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 C SG CYS 104 C CYS 133 1_555 C SG CYS 124 C CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf9 C SG CYS 168 C CYS 203 1_555 C SG CYS 388 C CYS 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf10 C SG CYS 185 C CYS 220 1_555 C SG CYS 214 C CYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 C SG CYS 195 C CYS 230 1_555 C SG CYS 206 C CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 C SG CYS 263 C CYS 298 1_555 C SG CYS 297 C CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf13 C SG CYS 343 C CYS 378 1_555 C SG CYS 400 C CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf14 C SG CYS 350 C CYS 385 1_555 C SG CYS 373 C CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf15 D SG CYS 87 D CYS 598 1_555 D SG CYS 93 D CYS 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf16 D SG CYS 94 D CYS 605 1_555 E SG CYS 456 E CYS 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf17 E SG CYS 27 E CYS 56 1_555 E SG CYS 47 E CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf18 E SG CYS 92 E CYS 121 1_555 E SG CYS 172 E CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf19 E SG CYS 99 E CYS 128 1_555 E SG CYS 163 E CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf20 E SG CYS 104 E CYS 133 1_555 E SG CYS 124 E CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf21 E SG CYS 168 E CYS 203 1_555 E SG CYS 388 E CYS 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf22 E SG CYS 185 E CYS 220 1_555 E SG CYS 214 E CYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf23 E SG CYS 195 E CYS 230 1_555 E SG CYS 206 E CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf24 E SG CYS 263 E CYS 298 1_555 E SG CYS 297 E CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf25 E SG CYS 343 E CYS 378 1_555 E SG CYS 400 E CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf26 E SG CYS 350 E CYS 385 1_555 E SG CYS 373 E CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf27 F SG CYS 27 G CYS 56 1_555 F SG CYS 47 G CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf28 F SG CYS 92 G CYS 121 1_555 F SG CYS 172 G CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf29 F SG CYS 99 G CYS 128 1_555 F SG CYS 163 G CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf30 F SG CYS 104 G CYS 133 1_555 F SG CYS 124 G CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf31 F SG CYS 168 G CYS 203 1_555 F SG CYS 388 G CYS 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf32 F SG CYS 185 G CYS 220 1_555 F SG CYS 214 G CYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf33 F SG CYS 195 G CYS 230 1_555 F SG CYS 206 G CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf34 F SG CYS 263 G CYS 298 1_555 F SG CYS 297 G CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf35 F SG CYS 343 G CYS 378 1_555 F SG CYS 400 G CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf36 F SG CYS 350 G CYS 385 1_555 F SG CYS 373 G CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 C ND2 ASN 103 C ASN 132 1_555 N C1 NAG . C NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale2 C ND2 ASN 127 C ASN 162 1_555 O C1 NAG . C NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale3 C ND2 ASN 256 C ASN 291 1_555 L C1 NAG . C NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale4 C ND2 ASN 298 C ASN 332 1_555 M C1 NAG . C NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 C ND2 ASN 403 C ASN 448 1_555 G C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale6 E ND2 ASN 103 E ASN 132 1_555 S C1 NAG . E NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale7 E ND2 ASN 127 E ASN 162 1_555 T C1 NAG . E NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale8 E ND2 ASN 256 E ASN 291 1_555 Q C1 NAG . E NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale9 E ND2 ASN 298 E ASN 332 1_555 R C1 NAG . E NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale10 E ND2 ASN 403 E ASN 448 1_555 H C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale11 F ND2 ASN 103 G ASN 132 1_555 W C1 NAG . G NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale12 F ND2 ASN 127 G ASN 162 1_555 X C1 NAG . G NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale13 F ND2 ASN 256 G ASN 291 1_555 U C1 NAG . G NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale14 F ND2 ASN 298 G ASN 332 1_555 V C1 NAG . G NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale15 F ND2 ASN 403 G ASN 448 1_555 I C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale16 G O6 NAG . I NAG 1 1_555 G C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale17 H O6 NAG . K NAG 1 1_555 H C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale18 I O6 NAG . L NAG 1 1_555 I C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8F7T _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 NAG A 1 701 661 NAG NAG . K 4 NAG B 1 701 661 NAG NAG . L 4 NAG C 1 601 506 NAG NAG . M 4 NAG C 1 602 507 NAG NAG . N 4 NAG C 1 603 508 NAG NAG . O 4 NAG C 1 604 509 NAG NAG . P 4 NAG D 1 701 661 NAG NAG . Q 4 NAG E 1 601 506 NAG NAG . R 4 NAG E 1 602 507 NAG NAG . S 4 NAG E 1 603 508 NAG NAG . T 4 NAG E 1 604 509 NAG NAG . U 4 NAG G 1 601 506 NAG NAG . V 4 NAG G 1 602 507 NAG NAG . W 4 NAG G 1 603 508 NAG NAG . X 4 NAG G 1 604 509 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . N 4 162.485 164.455 195.172 1 30 ? C1 NAG 603 C 1 HETATM 2 C C2 NAG . . . N 4 162.342 163.288 196.12 1 30 ? C2 NAG 603 C 1 HETATM 3 C C3 NAG . . . N 4 162.361 163.783 197.547 1 30 ? C3 NAG 603 C 1 HETATM 4 C C4 NAG . . . N 4 163.691 164.49 197.769 1 30 ? C4 NAG 603 C 1 HETATM 5 C C5 NAG . . . N 4 163.825 165.573 196.701 1 30 ? C5 NAG 603 C 1 HETATM 6 C C6 NAG . . . N 4 165.107 166.379 196.871 1 30 ? C6 NAG 603 C 1 HETATM 7 C C7 NAG . . . N 4 159.956 163.171 196.181 1 30 ? C7 NAG 603 C 1 HETATM 8 C C8 NAG . . . N 4 158.737 162.31 196.049 1 30 ? C8 NAG 603 C 1 HETATM 9 N N2 NAG . . . N 4 161.104 162.588 195.887 1 30 ? N2 NAG 603 C 1 HETATM 10 O O3 NAG . . . N 4 162.165 162.643 198.389 1 30 ? O3 NAG 603 C 1 HETATM 11 O O4 NAG . . . N 4 163.775 165.101 199.066 1 30 ? O4 NAG 603 C 1 HETATM 12 O O5 NAG . . . N 4 163.77 165.002 195.394 1 30 ? O5 NAG 603 C 1 HETATM 13 O O6 NAG . . . N 4 165.12 166.958 198.18 1 30 ? O6 NAG 603 C 1 HETATM 14 O O7 NAG . . . N 4 159.912 164.334 196.539 1 30 ? O7 NAG 603 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #