data_8F80 # _model_server_result.job_id 01ktauaT2Ex-DdEQp7jubA _model_server_result.datetime_utc '2024-11-15 23:37:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f80 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 8F80 # _exptl.entry_id 8F80 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 438.476 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[2-(3-{[2,4-diamino-6-(4-methoxyphenyl)pyrimidin-5-yl]oxy}propoxy)phenyl]propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.44 _cell.angle_gamma 90 _cell.entry_id 8F80 _cell.length_a 29.394 _cell.length_b 70.749 _cell.length_c 36.216 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F80 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H26 N4 O5' _chem_comp.formula_weight 438.476 _chem_comp.id XJB _chem_comp.mon_nstd_flag . _chem_comp.name '3-[2-(3-{[2,4-diamino-6-(4-methoxyphenyl)pyrimidin-5-yl]oxy}propoxy)phenyl]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 XJB sing 478 n n C1 N4 XJB doub 479 n y C1 N2 XJB sing 480 n y N4 C16 XJB sing 481 n y N2 C2 XJB doub 482 n y C16 C17 XJB sing 483 n n C16 C3 XJB doub 484 n y C2 N3 XJB sing 485 n n C2 C3 XJB sing 486 n y C23 C17 XJB doub 487 n y C23 C22 XJB sing 488 n y C17 C18 XJB sing 489 n y C3 O1 XJB sing 490 n n C22 C20 XJB doub 491 n y C18 C19 XJB doub 492 n y C20 C19 XJB sing 493 n y C20 O5 XJB sing 494 n n O1 C4 XJB sing 495 n n C21 O5 XJB sing 496 n n C4 C5 XJB sing 497 n n O3 C15 XJB doub 498 n n C13 C14 XJB sing 499 n n C13 C12 XJB sing 500 n n C15 C14 XJB sing 501 n n C15 O4 XJB sing 502 n n C5 C6 XJB sing 503 n n O2 C6 XJB sing 504 n n O2 C7 XJB sing 505 n n C12 C7 XJB doub 506 n y C12 C11 XJB sing 507 n y C7 C8 XJB sing 508 n y C11 C10 XJB doub 509 n y C8 C9 XJB doub 510 n y C10 C9 XJB sing 511 n y C18 H1 XJB sing 512 n n C21 H2 XJB sing 513 n n C21 H3 XJB sing 514 n n C21 H4 XJB sing 515 n n C14 H5 XJB sing 516 n n C14 H6 XJB sing 517 n n C13 H7 XJB sing 518 n n C13 H8 XJB sing 519 n n C5 H9 XJB sing 520 n n C5 H10 XJB sing 521 n n C6 H11 XJB sing 522 n n C6 H12 XJB sing 523 n n C8 H13 XJB sing 524 n n C9 H14 XJB sing 525 n n C4 H15 XJB sing 526 n n C4 H16 XJB sing 527 n n C10 H17 XJB sing 528 n n C11 H18 XJB sing 529 n n C19 H19 XJB sing 530 n n C22 H20 XJB sing 531 n n C23 H21 XJB sing 532 n n N1 H22 XJB sing 533 n n N1 H23 XJB sing 534 n n N3 H24 XJB sing 535 n n N3 H25 XJB sing 536 n n O4 H26 XJB sing 537 n n # _atom_sites.entry_id 8F80 _atom_sites.fract_transf_matrix[1][1] 0.034021 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.01336 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014134 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029665 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 201 NAP NAP . C 3 XJB A 1 202 202 XJB 738 . D 4 GOL A 1 203 1 GOL GOL . E 5 EDO A 1 204 1 EDO EDO . F 6 HOH A 1 301 115 HOH HOH . F 6 HOH A 2 302 109 HOH HOH . F 6 HOH A 3 303 185 HOH HOH . F 6 HOH A 4 304 186 HOH HOH . F 6 HOH A 5 305 99 HOH HOH . F 6 HOH A 6 306 174 HOH HOH . F 6 HOH A 7 307 178 HOH HOH . F 6 HOH A 8 308 136 HOH HOH . F 6 HOH A 9 309 161 HOH HOH . F 6 HOH A 10 310 119 HOH HOH . F 6 HOH A 11 311 164 HOH HOH . F 6 HOH A 12 312 145 HOH HOH . F 6 HOH A 13 313 28 HOH HOH . F 6 HOH A 14 314 38 HOH HOH . F 6 HOH A 15 315 78 HOH HOH . F 6 HOH A 16 316 148 HOH HOH . F 6 HOH A 17 317 46 HOH HOH . F 6 HOH A 18 318 75 HOH HOH . F 6 HOH A 19 319 10 HOH HOH . F 6 HOH A 20 320 123 HOH HOH . F 6 HOH A 21 321 59 HOH HOH . F 6 HOH A 22 322 15 HOH HOH . F 6 HOH A 23 323 73 HOH HOH . F 6 HOH A 24 324 90 HOH HOH . F 6 HOH A 25 325 112 HOH HOH . F 6 HOH A 26 326 98 HOH HOH . F 6 HOH A 27 327 45 HOH HOH . F 6 HOH A 28 328 42 HOH HOH . F 6 HOH A 29 329 7 HOH HOH . F 6 HOH A 30 330 96 HOH HOH . F 6 HOH A 31 331 48 HOH HOH . F 6 HOH A 32 332 56 HOH HOH . F 6 HOH A 33 333 11 HOH HOH . F 6 HOH A 34 334 68 HOH HOH . F 6 HOH A 35 335 93 HOH HOH . F 6 HOH A 36 336 179 HOH HOH . F 6 HOH A 37 337 13 HOH HOH . F 6 HOH A 38 338 30 HOH HOH . F 6 HOH A 39 339 26 HOH HOH . F 6 HOH A 40 340 33 HOH HOH . F 6 HOH A 41 341 37 HOH HOH . F 6 HOH A 42 342 50 HOH HOH . F 6 HOH A 43 343 44 HOH HOH . F 6 HOH A 44 344 22 HOH HOH . F 6 HOH A 45 345 63 HOH HOH . F 6 HOH A 46 346 152 HOH HOH . F 6 HOH A 47 347 95 HOH HOH . F 6 HOH A 48 348 176 HOH HOH . F 6 HOH A 49 349 20 HOH HOH . F 6 HOH A 50 350 169 HOH HOH . F 6 HOH A 51 351 5 HOH HOH . F 6 HOH A 52 352 110 HOH HOH . F 6 HOH A 53 353 81 HOH HOH . F 6 HOH A 54 354 153 HOH HOH . F 6 HOH A 55 355 66 HOH HOH . F 6 HOH A 56 356 105 HOH HOH . F 6 HOH A 57 357 2 HOH HOH . F 6 HOH A 58 358 132 HOH HOH . F 6 HOH A 59 359 17 HOH HOH . F 6 HOH A 60 360 128 HOH HOH . F 6 HOH A 61 361 18 HOH HOH . F 6 HOH A 62 362 6 HOH HOH . F 6 HOH A 63 363 12 HOH HOH . F 6 HOH A 64 364 193 HOH HOH . F 6 HOH A 65 365 89 HOH HOH . F 6 HOH A 66 366 36 HOH HOH . F 6 HOH A 67 367 117 HOH HOH . F 6 HOH A 68 368 24 HOH HOH . F 6 HOH A 69 369 151 HOH HOH . F 6 HOH A 70 370 55 HOH HOH . F 6 HOH A 71 371 57 HOH HOH . F 6 HOH A 72 372 88 HOH HOH . F 6 HOH A 73 373 47 HOH HOH . F 6 HOH A 74 374 134 HOH HOH . F 6 HOH A 75 375 126 HOH HOH . F 6 HOH A 76 376 83 HOH HOH . F 6 HOH A 77 377 86 HOH HOH . F 6 HOH A 78 378 4 HOH HOH . F 6 HOH A 79 379 61 HOH HOH . F 6 HOH A 80 380 49 HOH HOH . F 6 HOH A 81 381 62 HOH HOH . F 6 HOH A 82 382 32 HOH HOH . F 6 HOH A 83 383 118 HOH HOH . F 6 HOH A 84 384 60 HOH HOH . F 6 HOH A 85 385 97 HOH HOH . F 6 HOH A 86 386 166 HOH HOH . F 6 HOH A 87 387 101 HOH HOH . F 6 HOH A 88 388 54 HOH HOH . F 6 HOH A 89 389 137 HOH HOH . F 6 HOH A 90 390 1 HOH HOH . F 6 HOH A 91 391 72 HOH HOH . F 6 HOH A 92 392 9 HOH HOH . F 6 HOH A 93 393 114 HOH HOH . F 6 HOH A 94 394 14 HOH HOH . F 6 HOH A 95 395 184 HOH HOH . F 6 HOH A 96 396 21 HOH HOH . F 6 HOH A 97 397 51 HOH HOH . F 6 HOH A 98 398 40 HOH HOH . F 6 HOH A 99 399 177 HOH HOH . F 6 HOH A 100 400 8 HOH HOH . F 6 HOH A 101 401 133 HOH HOH . F 6 HOH A 102 402 125 HOH HOH . F 6 HOH A 103 403 3 HOH HOH . F 6 HOH A 104 404 29 HOH HOH . F 6 HOH A 105 405 165 HOH HOH . F 6 HOH A 106 406 150 HOH HOH . F 6 HOH A 107 407 35 HOH HOH . F 6 HOH A 108 408 25 HOH HOH . F 6 HOH A 109 409 31 HOH HOH . F 6 HOH A 110 410 64 HOH HOH . F 6 HOH A 111 411 141 HOH HOH . F 6 HOH A 112 412 130 HOH HOH . F 6 HOH A 113 413 71 HOH HOH . F 6 HOH A 114 414 102 HOH HOH . F 6 HOH A 115 415 19 HOH HOH . F 6 HOH A 116 416 53 HOH HOH . F 6 HOH A 117 417 87 HOH HOH . F 6 HOH A 118 418 34 HOH HOH . F 6 HOH A 119 419 173 HOH HOH . F 6 HOH A 120 420 82 HOH HOH . F 6 HOH A 121 421 140 HOH HOH . F 6 HOH A 122 422 189 HOH HOH . F 6 HOH A 123 423 65 HOH HOH . F 6 HOH A 124 424 80 HOH HOH . F 6 HOH A 125 425 23 HOH HOH . F 6 HOH A 126 426 107 HOH HOH . F 6 HOH A 127 427 135 HOH HOH . F 6 HOH A 128 428 142 HOH HOH . F 6 HOH A 129 429 58 HOH HOH . F 6 HOH A 130 430 76 HOH HOH . F 6 HOH A 131 431 67 HOH HOH . F 6 HOH A 132 432 183 HOH HOH . F 6 HOH A 133 433 84 HOH HOH . F 6 HOH A 134 434 103 HOH HOH . F 6 HOH A 135 435 180 HOH HOH . F 6 HOH A 136 436 27 HOH HOH . F 6 HOH A 137 437 138 HOH HOH . F 6 HOH A 138 438 94 HOH HOH . F 6 HOH A 139 439 92 HOH HOH . F 6 HOH A 140 440 167 HOH HOH . F 6 HOH A 141 441 131 HOH HOH . F 6 HOH A 142 442 69 HOH HOH . F 6 HOH A 143 443 113 HOH HOH . F 6 HOH A 144 444 146 HOH HOH . F 6 HOH A 145 445 100 HOH HOH . F 6 HOH A 146 446 139 HOH HOH . F 6 HOH A 147 447 43 HOH HOH . F 6 HOH A 148 448 156 HOH HOH . F 6 HOH A 149 449 124 HOH HOH . F 6 HOH A 150 450 172 HOH HOH . F 6 HOH A 151 451 16 HOH HOH . F 6 HOH A 152 452 70 HOH HOH . F 6 HOH A 153 453 158 HOH HOH . F 6 HOH A 154 454 79 HOH HOH . F 6 HOH A 155 455 194 HOH HOH . F 6 HOH A 156 456 52 HOH HOH . F 6 HOH A 157 457 171 HOH HOH . F 6 HOH A 158 458 144 HOH HOH . F 6 HOH A 159 459 106 HOH HOH . F 6 HOH A 160 460 175 HOH HOH . F 6 HOH A 161 461 39 HOH HOH . F 6 HOH A 162 462 77 HOH HOH . F 6 HOH A 163 463 170 HOH HOH . F 6 HOH A 164 464 108 HOH HOH . F 6 HOH A 165 465 162 HOH HOH . F 6 HOH A 166 466 127 HOH HOH . F 6 HOH A 167 467 197 HOH HOH . F 6 HOH A 168 468 157 HOH HOH . F 6 HOH A 169 469 159 HOH HOH . F 6 HOH A 170 470 122 HOH HOH . F 6 HOH A 171 471 155 HOH HOH . F 6 HOH A 172 472 91 HOH HOH . F 6 HOH A 173 473 116 HOH HOH . F 6 HOH A 174 474 163 HOH HOH . F 6 HOH A 175 475 74 HOH HOH . F 6 HOH A 176 476 192 HOH HOH . F 6 HOH A 177 477 182 HOH HOH . F 6 HOH A 178 478 195 HOH HOH . F 6 HOH A 179 479 168 HOH HOH . F 6 HOH A 180 480 190 HOH HOH . F 6 HOH A 181 481 188 HOH HOH . F 6 HOH A 182 482 181 HOH HOH . F 6 HOH A 183 483 160 HOH HOH . F 6 HOH A 184 484 147 HOH HOH . F 6 HOH A 185 485 191 HOH HOH . F 6 HOH A 186 486 187 HOH HOH . F 6 HOH A 187 487 196 HOH HOH . F 6 HOH A 188 488 111 HOH HOH . F 6 HOH A 189 489 129 HOH HOH . F 6 HOH A 190 490 154 HOH HOH . F 6 HOH A 191 491 41 HOH HOH . F 6 HOH A 192 492 120 HOH HOH . F 6 HOH A 193 493 121 HOH HOH . F 6 HOH A 194 494 143 HOH HOH . F 6 HOH A 195 495 149 HOH HOH . F 6 HOH A 196 496 85 HOH HOH . F 6 HOH A 197 497 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C16 XJB . . . C 3 -6.955 5.032 11.166 1 7.92 ? C16 XJB 202 A 1 HETATM 2 C C18 XJB . . . C 3 -6.572 6.911 12.771 1 15.14 ? C18 XJB 202 A 1 HETATM 3 C C21 XJB . . . C 3 -9.623 10.531 13.289 1 24.45 ? C21 XJB 202 A 1 HETATM 4 C C20 XJB . . . C 3 -8.098 8.722 12.9 1 18.33 ? C20 XJB 202 A 1 HETATM 5 C C17 XJB . . . C 3 -7.304 6.357 11.734 1 10.48 ? C17 XJB 202 A 1 HETATM 6 C C14 XJB . . . C 3 -12.347 6.232 15.974 1 15.03 ? C14 XJB 202 A 1 HETATM 7 C C13 XJB . . . C 3 -10.916 6.056 15.538 1 15.62 ? C13 XJB 202 A 1 HETATM 8 C C5 XJB . . . C 3 -6.653 3.837 15.556 1 10.74 ? C5 XJB 202 A 1 HETATM 9 C C2 XJB . . . C 3 -6.092 2.827 11.209 1 7.2 ? C2 XJB 202 A 1 HETATM 10 C C6 XJB . . . C 3 -6.766 5.293 15.936 1 12.52 ? C6 XJB 202 A 1 HETATM 11 C C3 XJB . . . C 3 -6.378 4.035 11.896 1 7.74 ? C3 XJB 202 A 1 HETATM 12 C C8 XJB . . . C 3 -7.719 7.86 16.65 1 15.16 ? C8 XJB 202 A 1 HETATM 13 C C12 XJB . . . C 3 -9.962 7.126 16.055 1 15.67 ? C12 XJB 202 A 1 HETATM 14 C C9 XJB . . . C 3 -8.211 9.108 16.981 1 16.45 ? C9 XJB 202 A 1 HETATM 15 C C4 XJB . . . C 3 -7.084 3.567 14.135 1 9.41 ? C4 XJB 202 A 1 HETATM 16 C C1 XJB . . . C 3 -6.886 3.709 9.259 1 7.57 ? C1 XJB 202 A 1 HETATM 17 C C10 XJB . . . C 3 -9.552 9.377 16.864 1 19.06 ? C10 XJB 202 A 1 HETATM 18 C C11 XJB . . . C 3 -10.414 8.396 16.406 1 17.6 ? C11 XJB 202 A 1 HETATM 19 C C15 XJB . . . C 3 -13.288 5.115 15.547 1 14.86 ? C15 XJB 202 A 1 HETATM 20 C C19 XJB . . . C 3 -6.936 8.116 13.32 1 17.69 ? C19 XJB 202 A 1 HETATM 21 C C22 XJB . . . C 3 -8.905 8.133 11.948 1 19.66 ? C22 XJB 202 A 1 HETATM 22 C C23 XJB . . . C 3 -8.517 6.935 11.39 1 16.39 ? C23 XJB 202 A 1 HETATM 23 C C7 XJB . . . C 3 -8.587 6.876 16.205 1 13.51 ? C7 XJB 202 A 1 HETATM 24 N N1 XJB . . . C 3 -7.175 3.576 7.959 1 7.6 ? N1 XJB 202 A 1 HETATM 25 N N2 XJB . . . C 3 -6.345 2.668 9.911 1 7.21 ? N2 XJB 202 A 1 HETATM 26 N N3 XJB . . . C 3 -5.528 1.792 11.877 1 7.48 ? N3 XJB 202 A 1 HETATM 27 N N4 XJB . . . C 3 -7.175 4.886 9.844 1 7.65 ? N4 XJB 202 A 1 HETATM 28 O O1 XJB . . . C 3 -6.12 4.15 13.238 1 8.53 ? O1 XJB 202 A 1 HETATM 29 O O2 XJB . . . C 3 -8.165 5.623 15.86 1 12.31 ? O2 XJB 202 A 1 HETATM 30 O O3 XJB . . . C 3 -12.895 4.236 14.757 1 13.16 ? O3 XJB 202 A 1 HETATM 31 O O4 XJB . . . C 3 -14.435 5.134 16.03 1 17.99 ? O4 XJB 202 A 1 HETATM 32 O O5 XJB . . . C 3 -8.371 9.902 13.527 1 22.76 ? O5 XJB 202 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 677 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 32 #