data_8F81 # _model_server_result.job_id bPmSLCPlHsSKEFkCNDejfA _model_server_result.datetime_utc '2024-11-15 20:43:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f81 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8F81 # _exptl.entry_id 8F81 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.46 _cell.angle_gamma 90 _cell.entry_id 8F81 _cell.length_a 29.336 _cell.length_b 70.622 _cell.length_c 36.139 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F81 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 8F81 _atom_sites.fract_transf_matrix[1][1] 0.034088 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0134 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029732 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 201 NAP NAP . C 3 XJN A 1 202 202 XJN 777 . D 4 HOH A 1 301 90 HOH HOH . D 4 HOH A 2 302 111 HOH HOH . D 4 HOH A 3 303 112 HOH HOH . D 4 HOH A 4 304 141 HOH HOH . D 4 HOH A 5 305 100 HOH HOH . D 4 HOH A 6 306 143 HOH HOH . D 4 HOH A 7 307 161 HOH HOH . D 4 HOH A 8 308 23 HOH HOH . D 4 HOH A 9 309 71 HOH HOH . D 4 HOH A 10 310 92 HOH HOH . D 4 HOH A 11 311 74 HOH HOH . D 4 HOH A 12 312 102 HOH HOH . D 4 HOH A 13 313 115 HOH HOH . D 4 HOH A 14 314 138 HOH HOH . D 4 HOH A 15 315 128 HOH HOH . D 4 HOH A 16 316 144 HOH HOH . D 4 HOH A 17 317 42 HOH HOH . D 4 HOH A 18 318 55 HOH HOH . D 4 HOH A 19 319 24 HOH HOH . D 4 HOH A 20 320 94 HOH HOH . D 4 HOH A 21 321 7 HOH HOH . D 4 HOH A 22 322 126 HOH HOH . D 4 HOH A 23 323 48 HOH HOH . D 4 HOH A 24 324 84 HOH HOH . D 4 HOH A 25 325 12 HOH HOH . D 4 HOH A 26 326 135 HOH HOH . D 4 HOH A 27 327 121 HOH HOH . D 4 HOH A 28 328 13 HOH HOH . D 4 HOH A 29 329 35 HOH HOH . D 4 HOH A 30 330 127 HOH HOH . D 4 HOH A 31 331 59 HOH HOH . D 4 HOH A 32 332 61 HOH HOH . D 4 HOH A 33 333 108 HOH HOH . D 4 HOH A 34 334 168 HOH HOH . D 4 HOH A 35 335 109 HOH HOH . D 4 HOH A 36 336 163 HOH HOH . D 4 HOH A 37 337 152 HOH HOH . D 4 HOH A 38 338 45 HOH HOH . D 4 HOH A 39 339 172 HOH HOH . D 4 HOH A 40 340 57 HOH HOH . D 4 HOH A 41 341 29 HOH HOH . D 4 HOH A 42 342 44 HOH HOH . D 4 HOH A 43 343 49 HOH HOH . D 4 HOH A 44 344 15 HOH HOH . D 4 HOH A 45 345 8 HOH HOH . D 4 HOH A 46 346 18 HOH HOH . D 4 HOH A 47 347 155 HOH HOH . D 4 HOH A 48 348 123 HOH HOH . D 4 HOH A 49 349 124 HOH HOH . D 4 HOH A 50 350 11 HOH HOH . D 4 HOH A 51 351 139 HOH HOH . D 4 HOH A 52 352 26 HOH HOH . D 4 HOH A 53 353 43 HOH HOH . D 4 HOH A 54 354 6 HOH HOH . D 4 HOH A 55 355 82 HOH HOH . D 4 HOH A 56 356 165 HOH HOH . D 4 HOH A 57 357 19 HOH HOH . D 4 HOH A 58 358 140 HOH HOH . D 4 HOH A 59 359 65 HOH HOH . D 4 HOH A 60 360 14 HOH HOH . D 4 HOH A 61 361 56 HOH HOH . D 4 HOH A 62 362 54 HOH HOH . D 4 HOH A 63 363 52 HOH HOH . D 4 HOH A 64 364 122 HOH HOH . D 4 HOH A 65 365 91 HOH HOH . D 4 HOH A 66 366 32 HOH HOH . D 4 HOH A 67 367 87 HOH HOH . D 4 HOH A 68 368 169 HOH HOH . D 4 HOH A 69 369 76 HOH HOH . D 4 HOH A 70 370 33 HOH HOH . D 4 HOH A 71 371 46 HOH HOH . D 4 HOH A 72 372 41 HOH HOH . D 4 HOH A 73 373 136 HOH HOH . D 4 HOH A 74 374 129 HOH HOH . D 4 HOH A 75 375 3 HOH HOH . D 4 HOH A 76 376 96 HOH HOH . D 4 HOH A 77 377 5 HOH HOH . D 4 HOH A 78 378 137 HOH HOH . D 4 HOH A 79 379 159 HOH HOH . D 4 HOH A 80 380 78 HOH HOH . D 4 HOH A 81 381 160 HOH HOH . D 4 HOH A 82 382 173 HOH HOH . D 4 HOH A 83 383 47 HOH HOH . D 4 HOH A 84 384 1 HOH HOH . D 4 HOH A 85 385 99 HOH HOH . D 4 HOH A 86 386 60 HOH HOH . D 4 HOH A 87 387 31 HOH HOH . D 4 HOH A 88 388 148 HOH HOH . D 4 HOH A 89 389 154 HOH HOH . D 4 HOH A 90 390 20 HOH HOH . D 4 HOH A 91 391 53 HOH HOH . D 4 HOH A 92 392 142 HOH HOH . D 4 HOH A 93 393 68 HOH HOH . D 4 HOH A 94 394 145 HOH HOH . D 4 HOH A 95 395 34 HOH HOH . D 4 HOH A 96 396 21 HOH HOH . D 4 HOH A 97 397 83 HOH HOH . D 4 HOH A 98 398 98 HOH HOH . D 4 HOH A 99 399 30 HOH HOH . D 4 HOH A 100 400 17 HOH HOH . D 4 HOH A 101 401 81 HOH HOH . D 4 HOH A 102 402 4 HOH HOH . D 4 HOH A 103 403 107 HOH HOH . D 4 HOH A 104 404 16 HOH HOH . D 4 HOH A 105 405 85 HOH HOH . D 4 HOH A 106 406 114 HOH HOH . D 4 HOH A 107 407 70 HOH HOH . D 4 HOH A 108 408 39 HOH HOH . D 4 HOH A 109 409 36 HOH HOH . D 4 HOH A 110 410 66 HOH HOH . D 4 HOH A 111 411 69 HOH HOH . D 4 HOH A 112 412 2 HOH HOH . D 4 HOH A 113 413 103 HOH HOH . D 4 HOH A 114 414 75 HOH HOH . D 4 HOH A 115 415 10 HOH HOH . D 4 HOH A 116 416 134 HOH HOH . D 4 HOH A 117 417 79 HOH HOH . D 4 HOH A 118 418 9 HOH HOH . D 4 HOH A 119 419 132 HOH HOH . D 4 HOH A 120 420 28 HOH HOH . D 4 HOH A 121 421 153 HOH HOH . D 4 HOH A 122 422 97 HOH HOH . D 4 HOH A 123 423 27 HOH HOH . D 4 HOH A 124 424 146 HOH HOH . D 4 HOH A 125 425 133 HOH HOH . D 4 HOH A 126 426 80 HOH HOH . D 4 HOH A 127 427 104 HOH HOH . D 4 HOH A 128 428 58 HOH HOH . D 4 HOH A 129 429 101 HOH HOH . D 4 HOH A 130 430 50 HOH HOH . D 4 HOH A 131 431 93 HOH HOH . D 4 HOH A 132 432 67 HOH HOH . D 4 HOH A 133 433 77 HOH HOH . D 4 HOH A 134 434 158 HOH HOH . D 4 HOH A 135 435 64 HOH HOH . D 4 HOH A 136 436 63 HOH HOH . D 4 HOH A 137 437 164 HOH HOH . D 4 HOH A 138 438 157 HOH HOH . D 4 HOH A 139 439 89 HOH HOH . D 4 HOH A 140 440 156 HOH HOH . D 4 HOH A 141 441 37 HOH HOH . D 4 HOH A 142 442 38 HOH HOH . D 4 HOH A 143 443 62 HOH HOH . D 4 HOH A 144 444 131 HOH HOH . D 4 HOH A 145 445 86 HOH HOH . D 4 HOH A 146 446 25 HOH HOH . D 4 HOH A 147 447 105 HOH HOH . D 4 HOH A 148 448 40 HOH HOH . D 4 HOH A 149 449 119 HOH HOH . D 4 HOH A 150 450 151 HOH HOH . D 4 HOH A 151 451 22 HOH HOH . D 4 HOH A 152 452 125 HOH HOH . D 4 HOH A 153 453 162 HOH HOH . D 4 HOH A 154 454 113 HOH HOH . D 4 HOH A 155 455 51 HOH HOH . D 4 HOH A 156 456 118 HOH HOH . D 4 HOH A 157 457 95 HOH HOH . D 4 HOH A 158 458 117 HOH HOH . D 4 HOH A 159 459 73 HOH HOH . D 4 HOH A 160 460 72 HOH HOH . D 4 HOH A 161 461 147 HOH HOH . D 4 HOH A 162 462 106 HOH HOH . D 4 HOH A 163 463 149 HOH HOH . D 4 HOH A 164 464 88 HOH HOH . D 4 HOH A 165 465 116 HOH HOH . D 4 HOH A 166 466 110 HOH HOH . D 4 HOH A 167 467 166 HOH HOH . D 4 HOH A 168 468 120 HOH HOH . D 4 HOH A 169 469 170 HOH HOH . D 4 HOH A 170 470 150 HOH HOH . D 4 HOH A 171 471 167 HOH HOH . D 4 HOH A 172 472 171 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 2.142 -0.94 19.522 1 11.52 ? PA NAP 201 A 1 HETATM 2 O O1A NAP . . . B 2 2.565 -2.045 18.618 1 12.18 ? O1A NAP 201 A 1 HETATM 3 O O2A NAP . . . B 2 0.753 -0.412 19.395 1 11.73 ? O2A NAP 201 A 1 HETATM 4 O O5B NAP . . . B 2 2.298 -1.414 21.042 1 11.87 ? O5B NAP 201 A 1 HETATM 5 C C5B NAP . . . B 2 3.58 -1.787 21.592 1 12.3 ? C5B NAP 201 A 1 HETATM 6 C C4B NAP . . . B 2 3.325 -2.501 22.894 1 12.7 ? C4B NAP 201 A 1 HETATM 7 O O4B NAP . . . B 2 2.755 -3.808 22.641 1 11.99 ? O4B NAP 201 A 1 HETATM 8 C C3B NAP . . . B 2 4.541 -2.78 23.782 1 12.3 ? C3B NAP 201 A 1 HETATM 9 O O3B NAP . . . B 2 4.932 -1.6 24.471 1 13.33 ? O3B NAP 201 A 1 HETATM 10 C C2B NAP . . . B 2 3.992 -3.896 24.664 1 13.3 ? C2B NAP 201 A 1 HETATM 11 O O2B NAP . . . B 2 3.028 -3.435 25.61 1 12.38 ? O2B NAP 201 A 1 HETATM 12 C C1B NAP . . . B 2 3.208 -4.707 23.633 1 12.58 ? C1B NAP 201 A 1 HETATM 13 N N9A NAP . . . B 2 3.995 -5.762 23.007 1 13.28 ? N9A NAP 201 A 1 HETATM 14 C C8A NAP . . . B 2 4.837 -5.652 21.929 1 14.35 ? C8A NAP 201 A 1 HETATM 15 N N7A NAP . . . B 2 5.406 -6.786 21.6 1 15.73 ? N7A NAP 201 A 1 HETATM 16 C C5A NAP . . . B 2 4.907 -7.702 22.514 1 15.17 ? C5A NAP 201 A 1 HETATM 17 C C6A NAP . . . B 2 5.121 -9.082 22.69 1 16.99 ? C6A NAP 201 A 1 HETATM 18 N N6A NAP . . . B 2 5.934 -9.808 21.926 1 20.46 ? N6A NAP 201 A 1 HETATM 19 N N1A NAP . . . B 2 4.456 -9.692 23.7 1 16.83 ? N1A NAP 201 A 1 HETATM 20 C C2A NAP . . . B 2 3.638 -8.959 24.466 1 15.86 ? C2A NAP 201 A 1 HETATM 21 N N3A NAP . . . B 2 3.368 -7.66 24.398 1 14.61 ? N3A NAP 201 A 1 HETATM 22 C C4A NAP . . . B 2 4.029 -7.083 23.382 1 14.31 ? C4A NAP 201 A 1 HETATM 23 O O3 NAP . . . B 2 3.195 0.264 19.508 1 12.69 ? O3 NAP 201 A 1 HETATM 24 P PN NAP . . . B 2 3.958 1.094 18.378 1 13.39 ? PN NAP 201 A 1 HETATM 25 O O1N NAP . . . B 2 4.699 0.152 17.491 1 14.27 ? O1N NAP 201 A 1 HETATM 26 O O2N NAP . . . B 2 4.711 2.177 19.076 1 14.74 ? O2N NAP 201 A 1 HETATM 27 O O5D NAP . . . B 2 2.744 1.702 17.535 1 13.22 ? O5D NAP 201 A 1 HETATM 28 C C5D NAP . . . B 2 1.979 2.792 18.098 1 13.97 ? C5D NAP 201 A 1 HETATM 29 C C4D NAP . . . B 2 1.9 3.899 17.078 1 11.98 ? C4D NAP 201 A 1 HETATM 30 O O4D NAP . . . B 2 1.224 3.409 15.897 1 13.32 ? O4D NAP 201 A 1 HETATM 31 C C3D NAP . . . B 2 1.105 5.139 17.515 1 12.36 ? C3D NAP 201 A 1 HETATM 32 O O3D NAP . . . B 2 1.649 6.29 16.883 1 13.31 ? O3D NAP 201 A 1 HETATM 33 C C2D NAP . . . B 2 -0.287 4.847 16.945 1 12.76 ? C2D NAP 201 A 1 HETATM 34 O O2D NAP . . . B 2 -1.055 6.027 16.777 1 13.36 ? O2D NAP 201 A 1 HETATM 35 C C1D NAP . . . B 2 0.142 4.28 15.596 1 12.81 ? C1D NAP 201 A 1 HETATM 36 N N1N NAP . . . B 2 -0.877 3.486 14.892 1 11.93 ? N1N NAP 201 A 1 HETATM 37 C C2N NAP . . . B 2 -1.15 3.758 13.572 1 11.71 ? C2N NAP 201 A 1 HETATM 38 C C3N NAP . . . B 2 -2.08 2.99 12.885 1 11.24 ? C3N NAP 201 A 1 HETATM 39 C C7N NAP . . . B 2 -2.356 3.302 11.448 1 11.38 ? C7N NAP 201 A 1 HETATM 40 O O7N NAP . . . B 2 -3.081 2.546 10.785 1 12.19 ? O7N NAP 201 A 1 HETATM 41 N N7N NAP . . . B 2 -1.823 4.399 10.928 1 10.66 ? N7N NAP 201 A 1 HETATM 42 C C4N NAP . . . B 2 -2.72 1.948 13.54 1 12.15 ? C4N NAP 201 A 1 HETATM 43 C C5N NAP . . . B 2 -2.427 1.677 14.863 1 12.5 ? C5N NAP 201 A 1 HETATM 44 C C6N NAP . . . B 2 -1.502 2.445 15.535 1 11.83 ? C6N NAP 201 A 1 HETATM 45 P P2B NAP . . . B 2 3.551 -3.172 27.114 1 12.9 ? P2B NAP 201 A 1 HETATM 46 O O1X NAP . . . B 2 2.253 -2.81 27.797 1 13.21 ? O1X NAP 201 A 1 HETATM 47 O O2X NAP . . . B 2 4.151 -4.463 27.623 1 13.48 ? O2X NAP 201 A 1 HETATM 48 O O3X NAP . . . B 2 4.535 -2.021 27.029 1 13.36 ? O3X NAP 201 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 48 #