data_8F81 # _model_server_result.job_id tf2am0oov2twAhNvON4bOA _model_server_result.datetime_utc '2024-11-15 20:54:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f81 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 8F81 # _exptl.entry_id 8F81 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-(2-{3-[(2,4-diamino-6-pentylpyrimidin-5-yl)oxy]propoxy}phenyl)propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.46 _cell.angle_gamma 90 _cell.entry_id 8F81 _cell.length_a 29.336 _cell.length_b 70.622 _cell.length_c 36.139 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F81 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N4 O4' _chem_comp.formula_weight 402.487 _chem_comp.id XJN _chem_comp.mon_nstd_flag . _chem_comp.name '3-(2-{3-[(2,4-diamino-6-pentylpyrimidin-5-yl)oxy]propoxy}phenyl)propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 XJN sing 456 n n C1 N4 XJN doub 457 n y C1 N2 XJN sing 458 n y N4 C16 XJN sing 459 n y N2 C2 XJN doub 460 n y C16 C17 XJN sing 461 n n C16 C3 XJN doub 462 n y C2 C3 XJN sing 463 n y C2 N3 XJN sing 464 n n C17 C18 XJN sing 465 n n C18 C19 XJN sing 466 n n C3 O1 XJN sing 467 n n C20 C19 XJN sing 468 n n C20 C21 XJN sing 469 n n O1 C4 XJN sing 470 n n C4 C5 XJN sing 471 n n O4 C15 XJN doub 472 n n C15 O3 XJN sing 473 n n C15 C14 XJN sing 474 n n C5 C6 XJN sing 475 n n C13 C14 XJN sing 476 n n C13 C12 XJN sing 477 n n O2 C6 XJN sing 478 n n O2 C7 XJN sing 479 n n C12 C7 XJN doub 480 n y C12 C11 XJN sing 481 n y C7 C8 XJN sing 482 n y C11 C10 XJN doub 483 n y C8 C9 XJN doub 484 n y C10 C9 XJN sing 485 n y O3 H1 XJN sing 486 n n C4 H2 XJN sing 487 n n C4 H3 XJN sing 488 n n N3 H4 XJN sing 489 n n N3 H5 XJN sing 490 n n N1 H6 XJN sing 491 n n N1 H7 XJN sing 492 n n C8 H8 XJN sing 493 n n C5 H9 XJN sing 494 n n C5 H10 XJN sing 495 n n C6 H11 XJN sing 496 n n C6 H12 XJN sing 497 n n C10 H13 XJN sing 498 n n C11 H14 XJN sing 499 n n C13 H15 XJN sing 500 n n C13 H16 XJN sing 501 n n C14 H17 XJN sing 502 n n C14 H18 XJN sing 503 n n C17 H19 XJN sing 504 n n C17 H20 XJN sing 505 n n C18 H21 XJN sing 506 n n C18 H22 XJN sing 507 n n C19 H23 XJN sing 508 n n C19 H24 XJN sing 509 n n C20 H25 XJN sing 510 n n C20 H26 XJN sing 511 n n C21 H27 XJN sing 512 n n C21 H28 XJN sing 513 n n C21 H29 XJN sing 514 n n C9 H30 XJN sing 515 n n # _atom_sites.entry_id 8F81 _atom_sites.fract_transf_matrix[1][1] 0.034088 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0134 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029732 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 201 NAP NAP . C 3 XJN A 1 202 202 XJN 777 . D 4 HOH A 1 301 90 HOH HOH . D 4 HOH A 2 302 111 HOH HOH . D 4 HOH A 3 303 112 HOH HOH . D 4 HOH A 4 304 141 HOH HOH . D 4 HOH A 5 305 100 HOH HOH . D 4 HOH A 6 306 143 HOH HOH . D 4 HOH A 7 307 161 HOH HOH . D 4 HOH A 8 308 23 HOH HOH . D 4 HOH A 9 309 71 HOH HOH . D 4 HOH A 10 310 92 HOH HOH . D 4 HOH A 11 311 74 HOH HOH . D 4 HOH A 12 312 102 HOH HOH . D 4 HOH A 13 313 115 HOH HOH . D 4 HOH A 14 314 138 HOH HOH . D 4 HOH A 15 315 128 HOH HOH . D 4 HOH A 16 316 144 HOH HOH . D 4 HOH A 17 317 42 HOH HOH . D 4 HOH A 18 318 55 HOH HOH . D 4 HOH A 19 319 24 HOH HOH . D 4 HOH A 20 320 94 HOH HOH . D 4 HOH A 21 321 7 HOH HOH . D 4 HOH A 22 322 126 HOH HOH . D 4 HOH A 23 323 48 HOH HOH . D 4 HOH A 24 324 84 HOH HOH . D 4 HOH A 25 325 12 HOH HOH . D 4 HOH A 26 326 135 HOH HOH . D 4 HOH A 27 327 121 HOH HOH . D 4 HOH A 28 328 13 HOH HOH . D 4 HOH A 29 329 35 HOH HOH . D 4 HOH A 30 330 127 HOH HOH . D 4 HOH A 31 331 59 HOH HOH . D 4 HOH A 32 332 61 HOH HOH . D 4 HOH A 33 333 108 HOH HOH . D 4 HOH A 34 334 168 HOH HOH . D 4 HOH A 35 335 109 HOH HOH . D 4 HOH A 36 336 163 HOH HOH . D 4 HOH A 37 337 152 HOH HOH . D 4 HOH A 38 338 45 HOH HOH . D 4 HOH A 39 339 172 HOH HOH . D 4 HOH A 40 340 57 HOH HOH . D 4 HOH A 41 341 29 HOH HOH . D 4 HOH A 42 342 44 HOH HOH . D 4 HOH A 43 343 49 HOH HOH . D 4 HOH A 44 344 15 HOH HOH . D 4 HOH A 45 345 8 HOH HOH . D 4 HOH A 46 346 18 HOH HOH . D 4 HOH A 47 347 155 HOH HOH . D 4 HOH A 48 348 123 HOH HOH . D 4 HOH A 49 349 124 HOH HOH . D 4 HOH A 50 350 11 HOH HOH . D 4 HOH A 51 351 139 HOH HOH . D 4 HOH A 52 352 26 HOH HOH . D 4 HOH A 53 353 43 HOH HOH . D 4 HOH A 54 354 6 HOH HOH . D 4 HOH A 55 355 82 HOH HOH . D 4 HOH A 56 356 165 HOH HOH . D 4 HOH A 57 357 19 HOH HOH . D 4 HOH A 58 358 140 HOH HOH . D 4 HOH A 59 359 65 HOH HOH . D 4 HOH A 60 360 14 HOH HOH . D 4 HOH A 61 361 56 HOH HOH . D 4 HOH A 62 362 54 HOH HOH . D 4 HOH A 63 363 52 HOH HOH . D 4 HOH A 64 364 122 HOH HOH . D 4 HOH A 65 365 91 HOH HOH . D 4 HOH A 66 366 32 HOH HOH . D 4 HOH A 67 367 87 HOH HOH . D 4 HOH A 68 368 169 HOH HOH . D 4 HOH A 69 369 76 HOH HOH . D 4 HOH A 70 370 33 HOH HOH . D 4 HOH A 71 371 46 HOH HOH . D 4 HOH A 72 372 41 HOH HOH . D 4 HOH A 73 373 136 HOH HOH . D 4 HOH A 74 374 129 HOH HOH . D 4 HOH A 75 375 3 HOH HOH . D 4 HOH A 76 376 96 HOH HOH . D 4 HOH A 77 377 5 HOH HOH . D 4 HOH A 78 378 137 HOH HOH . D 4 HOH A 79 379 159 HOH HOH . D 4 HOH A 80 380 78 HOH HOH . D 4 HOH A 81 381 160 HOH HOH . D 4 HOH A 82 382 173 HOH HOH . D 4 HOH A 83 383 47 HOH HOH . D 4 HOH A 84 384 1 HOH HOH . D 4 HOH A 85 385 99 HOH HOH . D 4 HOH A 86 386 60 HOH HOH . D 4 HOH A 87 387 31 HOH HOH . D 4 HOH A 88 388 148 HOH HOH . D 4 HOH A 89 389 154 HOH HOH . D 4 HOH A 90 390 20 HOH HOH . D 4 HOH A 91 391 53 HOH HOH . D 4 HOH A 92 392 142 HOH HOH . D 4 HOH A 93 393 68 HOH HOH . D 4 HOH A 94 394 145 HOH HOH . D 4 HOH A 95 395 34 HOH HOH . D 4 HOH A 96 396 21 HOH HOH . D 4 HOH A 97 397 83 HOH HOH . D 4 HOH A 98 398 98 HOH HOH . D 4 HOH A 99 399 30 HOH HOH . D 4 HOH A 100 400 17 HOH HOH . D 4 HOH A 101 401 81 HOH HOH . D 4 HOH A 102 402 4 HOH HOH . D 4 HOH A 103 403 107 HOH HOH . D 4 HOH A 104 404 16 HOH HOH . D 4 HOH A 105 405 85 HOH HOH . D 4 HOH A 106 406 114 HOH HOH . D 4 HOH A 107 407 70 HOH HOH . D 4 HOH A 108 408 39 HOH HOH . D 4 HOH A 109 409 36 HOH HOH . D 4 HOH A 110 410 66 HOH HOH . D 4 HOH A 111 411 69 HOH HOH . D 4 HOH A 112 412 2 HOH HOH . D 4 HOH A 113 413 103 HOH HOH . D 4 HOH A 114 414 75 HOH HOH . D 4 HOH A 115 415 10 HOH HOH . D 4 HOH A 116 416 134 HOH HOH . D 4 HOH A 117 417 79 HOH HOH . D 4 HOH A 118 418 9 HOH HOH . D 4 HOH A 119 419 132 HOH HOH . D 4 HOH A 120 420 28 HOH HOH . D 4 HOH A 121 421 153 HOH HOH . D 4 HOH A 122 422 97 HOH HOH . D 4 HOH A 123 423 27 HOH HOH . D 4 HOH A 124 424 146 HOH HOH . D 4 HOH A 125 425 133 HOH HOH . D 4 HOH A 126 426 80 HOH HOH . D 4 HOH A 127 427 104 HOH HOH . D 4 HOH A 128 428 58 HOH HOH . D 4 HOH A 129 429 101 HOH HOH . D 4 HOH A 130 430 50 HOH HOH . D 4 HOH A 131 431 93 HOH HOH . D 4 HOH A 132 432 67 HOH HOH . D 4 HOH A 133 433 77 HOH HOH . D 4 HOH A 134 434 158 HOH HOH . D 4 HOH A 135 435 64 HOH HOH . D 4 HOH A 136 436 63 HOH HOH . D 4 HOH A 137 437 164 HOH HOH . D 4 HOH A 138 438 157 HOH HOH . D 4 HOH A 139 439 89 HOH HOH . D 4 HOH A 140 440 156 HOH HOH . D 4 HOH A 141 441 37 HOH HOH . D 4 HOH A 142 442 38 HOH HOH . D 4 HOH A 143 443 62 HOH HOH . D 4 HOH A 144 444 131 HOH HOH . D 4 HOH A 145 445 86 HOH HOH . D 4 HOH A 146 446 25 HOH HOH . D 4 HOH A 147 447 105 HOH HOH . D 4 HOH A 148 448 40 HOH HOH . D 4 HOH A 149 449 119 HOH HOH . D 4 HOH A 150 450 151 HOH HOH . D 4 HOH A 151 451 22 HOH HOH . D 4 HOH A 152 452 125 HOH HOH . D 4 HOH A 153 453 162 HOH HOH . D 4 HOH A 154 454 113 HOH HOH . D 4 HOH A 155 455 51 HOH HOH . D 4 HOH A 156 456 118 HOH HOH . D 4 HOH A 157 457 95 HOH HOH . D 4 HOH A 158 458 117 HOH HOH . D 4 HOH A 159 459 73 HOH HOH . D 4 HOH A 160 460 72 HOH HOH . D 4 HOH A 161 461 147 HOH HOH . D 4 HOH A 162 462 106 HOH HOH . D 4 HOH A 163 463 149 HOH HOH . D 4 HOH A 164 464 88 HOH HOH . D 4 HOH A 165 465 116 HOH HOH . D 4 HOH A 166 466 110 HOH HOH . D 4 HOH A 167 467 166 HOH HOH . D 4 HOH A 168 468 120 HOH HOH . D 4 HOH A 169 469 170 HOH HOH . D 4 HOH A 170 470 150 HOH HOH . D 4 HOH A 171 471 167 HOH HOH . D 4 HOH A 172 472 171 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XJN . . . C 3 -6.797 1.938 9.279 1 9.76 ? C1 XJN 202 A 1 HETATM 2 C C3 XJN . . . C 3 -6.26 2.27 11.876 1 9.97 ? C3 XJN 202 A 1 HETATM 3 N N4 XJN . . . C 3 -7.008 3.154 9.822 1 10.74 ? N4 XJN 202 A 1 HETATM 4 O O2 XJN . . . C 3 -8.174 3.938 15.786 1 14.2 ? O2 XJN 202 A 1 HETATM 5 O O3 XJN . . . C 3 -14.472 3.309 15.973 1 20.13 ? O3 XJN 202 A 1 HETATM 6 C C4 XJN . . . C 3 -6.892 1.76 14.161 1 13.26 ? C4 XJN 202 A 1 HETATM 7 N N3 XJN . . . C 3 -5.565 -0.066 11.906 1 11.31 ? N3 XJN 202 A 1 HETATM 8 C C2 XJN . . . C 3 -6.067 1.002 11.224 1 10.02 ? C2 XJN 202 A 1 HETATM 9 N N2 XJN . . . C 3 -6.333 0.857 9.922 1 10.05 ? N2 XJN 202 A 1 HETATM 10 N N1 XJN . . . C 3 -7.083 1.788 7.967 1 10.04 ? N1 XJN 202 A 1 HETATM 11 C C8 XJN . . . C 3 -7.792 6.208 16.516 1 19.01 ? C8 XJN 202 A 1 HETATM 12 C C5 XJN . . . C 3 -6.556 2.209 15.565 1 12.73 ? C5 XJN 202 A 1 HETATM 13 C C6 XJN . . . C 3 -6.758 3.683 15.826 1 13.6 ? C6 XJN 202 A 1 HETATM 14 C C10 XJN . . . C 3 -9.674 7.663 16.756 1 22.51 ? C10 XJN 202 A 1 HETATM 15 C C11 XJN . . . C 3 -10.511 6.636 16.353 1 20.84 ? C11 XJN 202 A 1 HETATM 16 C C12 XJN . . . C 3 -10.021 5.371 16.03 1 18.83 ? C12 XJN 202 A 1 HETATM 17 C C13 XJN . . . C 3 -10.943 4.251 15.578 1 17.56 ? C13 XJN 202 A 1 HETATM 18 C C14 XJN . . . C 3 -12.386 4.436 16.008 1 17.68 ? C14 XJN 202 A 1 HETATM 19 C C15 XJN . . . C 3 -13.301 3.31 15.549 1 17.38 ? C15 XJN 202 A 1 HETATM 20 C C16 XJN . . . C 3 -6.739 3.318 11.132 1 10.69 ? C16 XJN 202 A 1 HETATM 21 C C17 XJN . . . C 3 -7.009 4.683 11.704 1 11.84 ? C17 XJN 202 A 1 HETATM 22 C C18 XJN . . . C 3 -8.51 4.93 11.83 1 16.43 ? C18 XJN 202 A 1 HETATM 23 C C19 XJN . . . C 3 -8.955 6.107 12.688 1 23.91 ? C19 XJN 202 A 1 HETATM 24 C C20 XJN . . . C 3 -8.368 7.441 12.286 1 27.31 ? C20 XJN 202 A 1 HETATM 25 C C21 XJN . . . C 3 -8.917 8.567 13.137 1 27.47 ? C21 XJN 202 A 1 HETATM 26 C C7 XJN . . . C 3 -8.634 5.182 16.121 1 16.23 ? C7 XJN 202 A 1 HETATM 27 C C9 XJN . . . C 3 -8.319 7.445 16.835 1 20.43 ? C9 XJN 202 A 1 HETATM 28 O O1 XJN . . . C 3 -6.012 2.424 13.233 1 10.63 ? O1 XJN 202 A 1 HETATM 29 O O4 XJN . . . C 3 -12.849 2.445 14.767 1 16.71 ? O4 XJN 202 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 29 #