data_8F82 # _model_server_result.job_id br-TgTI2KVsA2JJf51oqPA _model_server_result.datetime_utc '2024-11-15 20:44:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f82 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8F82 # _exptl.entry_id 8F82 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 476.448 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-{2-[3-({(6M)-2,4-diamino-6-[3-(trifluoromethyl)phenyl]pyrimidin-5-yl}oxy)propoxy]phenyl}propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.48 _cell.angle_gamma 90 _cell.entry_id 8F82 _cell.length_a 28.666 _cell.length_b 66.739 _cell.length_c 44.025 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F82 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H23 F3 N4 O4' _chem_comp.formula_weight 476.448 _chem_comp.id XJT _chem_comp.mon_nstd_flag . _chem_comp.name '3-{2-[3-({(6M)-2,4-diamino-6-[3-(trifluoromethyl)phenyl]pyrimidin-5-yl}oxy)propoxy]phenyl}propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C2 XJT sing 477 n n N2 C2 XJT doub 478 n y N2 C1 XJT sing 479 n y C2 C3 XJT sing 480 n y N1 C1 XJT sing 481 n n C1 N4 XJT doub 482 n y C4 O1 XJT sing 483 n n C4 C5 XJT sing 484 n n C3 O1 XJT sing 485 n n C3 C16 XJT doub 486 n y O4 C15 XJT doub 487 n n N4 C16 XJT sing 488 n y C5 C6 XJT sing 489 n n C16 C17 XJT sing 490 n n C15 O3 XJT sing 491 n n C15 C14 XJT sing 492 n n C6 O2 XJT sing 493 n n O2 C7 XJT sing 494 n n C17 C23 XJT doub 495 n y C17 C18 XJT sing 496 n y C13 C14 XJT sing 497 n n C13 C12 XJT sing 498 n n C23 C22 XJT sing 499 n y C18 C19 XJT doub 500 n y C7 C12 XJT doub 501 n y C7 C8 XJT sing 502 n y C12 C11 XJT sing 503 n y C22 C21 XJT doub 504 n y C8 C9 XJT doub 505 n y C19 C21 XJT sing 506 n y C19 C20 XJT sing 507 n n C11 C10 XJT doub 508 n y F2 C20 XJT sing 509 n n C20 F1 XJT sing 510 n n C20 F3 XJT sing 511 n n C9 C10 XJT sing 512 n y N1 H1 XJT sing 513 n n N1 H2 XJT sing 514 n n C4 H3 XJT sing 515 n n C4 H4 XJT sing 516 n n C6 H5 XJT sing 517 n n C6 H6 XJT sing 518 n n C8 H7 XJT sing 519 n n C9 H8 XJT sing 520 n n C10 H9 XJT sing 521 n n C11 H10 XJT sing 522 n n C13 H11 XJT sing 523 n n C13 H12 XJT sing 524 n n C23 H13 XJT sing 525 n n C14 H14 XJT sing 526 n n C14 H15 XJT sing 527 n n C18 H16 XJT sing 528 n n C21 H17 XJT sing 529 n n C22 H18 XJT sing 530 n n C5 H19 XJT sing 531 n n C5 H20 XJT sing 532 n n N3 H21 XJT sing 533 n n N3 H22 XJT sing 534 n n O3 H23 XJT sing 535 n n # _atom_sites.entry_id 8F82 _atom_sites.fract_transf_matrix[1][1] 0.034885 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000292 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XJT A 1 201 202 XJT 845 . C 3 MPD A 1 202 203 MPD MPD . D 4 NAP A 1 203 201 NAP NAP . E 5 BR A 1 204 1 BR BR . F 6 HOH A 1 301 143 HOH HOH . F 6 HOH A 2 302 170 HOH HOH . F 6 HOH A 3 303 174 HOH HOH . F 6 HOH A 4 304 142 HOH HOH . F 6 HOH A 5 305 129 HOH HOH . F 6 HOH A 6 306 28 HOH HOH . F 6 HOH A 7 307 52 HOH HOH . F 6 HOH A 8 308 88 HOH HOH . F 6 HOH A 9 309 14 HOH HOH . F 6 HOH A 10 310 182 HOH HOH . F 6 HOH A 11 311 145 HOH HOH . F 6 HOH A 12 312 92 HOH HOH . F 6 HOH A 13 313 148 HOH HOH . F 6 HOH A 14 314 120 HOH HOH . F 6 HOH A 15 315 90 HOH HOH . F 6 HOH A 16 316 187 HOH HOH . F 6 HOH A 17 317 42 HOH HOH . F 6 HOH A 18 318 114 HOH HOH . F 6 HOH A 19 319 131 HOH HOH . F 6 HOH A 20 320 123 HOH HOH . F 6 HOH A 21 321 20 HOH HOH . F 6 HOH A 22 322 51 HOH HOH . F 6 HOH A 23 323 65 HOH HOH . F 6 HOH A 24 324 95 HOH HOH . F 6 HOH A 25 325 127 HOH HOH . F 6 HOH A 26 326 94 HOH HOH . F 6 HOH A 27 327 144 HOH HOH . F 6 HOH A 28 328 71 HOH HOH . F 6 HOH A 29 329 116 HOH HOH . F 6 HOH A 30 330 130 HOH HOH . F 6 HOH A 31 331 60 HOH HOH . F 6 HOH A 32 332 93 HOH HOH . F 6 HOH A 33 333 151 HOH HOH . F 6 HOH A 34 334 63 HOH HOH . F 6 HOH A 35 335 81 HOH HOH . F 6 HOH A 36 336 154 HOH HOH . F 6 HOH A 37 337 17 HOH HOH . F 6 HOH A 38 338 73 HOH HOH . F 6 HOH A 39 339 7 HOH HOH . F 6 HOH A 40 340 4 HOH HOH . F 6 HOH A 41 341 69 HOH HOH . F 6 HOH A 42 342 91 HOH HOH . F 6 HOH A 43 343 32 HOH HOH . F 6 HOH A 44 344 68 HOH HOH . F 6 HOH A 45 345 54 HOH HOH . F 6 HOH A 46 346 89 HOH HOH . F 6 HOH A 47 347 78 HOH HOH . F 6 HOH A 48 348 53 HOH HOH . F 6 HOH A 49 349 10 HOH HOH . F 6 HOH A 50 350 117 HOH HOH . F 6 HOH A 51 351 25 HOH HOH . F 6 HOH A 52 352 6 HOH HOH . F 6 HOH A 53 353 195 HOH HOH . F 6 HOH A 54 354 105 HOH HOH . F 6 HOH A 55 355 19 HOH HOH . F 6 HOH A 56 356 157 HOH HOH . F 6 HOH A 57 357 160 HOH HOH . F 6 HOH A 58 358 43 HOH HOH . F 6 HOH A 59 359 172 HOH HOH . F 6 HOH A 60 360 183 HOH HOH . F 6 HOH A 61 361 9 HOH HOH . F 6 HOH A 62 362 159 HOH HOH . F 6 HOH A 63 363 141 HOH HOH . F 6 HOH A 64 364 137 HOH HOH . F 6 HOH A 65 365 165 HOH HOH . F 6 HOH A 66 366 49 HOH HOH . F 6 HOH A 67 367 33 HOH HOH . F 6 HOH A 68 368 133 HOH HOH . F 6 HOH A 69 369 135 HOH HOH . F 6 HOH A 70 370 50 HOH HOH . F 6 HOH A 71 371 169 HOH HOH . F 6 HOH A 72 372 138 HOH HOH . F 6 HOH A 73 373 189 HOH HOH . F 6 HOH A 74 374 75 HOH HOH . F 6 HOH A 75 375 36 HOH HOH . F 6 HOH A 76 376 115 HOH HOH . F 6 HOH A 77 377 8 HOH HOH . F 6 HOH A 78 378 184 HOH HOH . F 6 HOH A 79 379 16 HOH HOH . F 6 HOH A 80 380 82 HOH HOH . F 6 HOH A 81 381 121 HOH HOH . F 6 HOH A 82 382 31 HOH HOH . F 6 HOH A 83 383 125 HOH HOH . F 6 HOH A 84 384 139 HOH HOH . F 6 HOH A 85 385 30 HOH HOH . F 6 HOH A 86 386 83 HOH HOH . F 6 HOH A 87 387 61 HOH HOH . F 6 HOH A 88 388 26 HOH HOH . F 6 HOH A 89 389 56 HOH HOH . F 6 HOH A 90 390 85 HOH HOH . F 6 HOH A 91 391 13 HOH HOH . F 6 HOH A 92 392 59 HOH HOH . F 6 HOH A 93 393 62 HOH HOH . F 6 HOH A 94 394 35 HOH HOH . F 6 HOH A 95 395 38 HOH HOH . F 6 HOH A 96 396 196 HOH HOH . F 6 HOH A 97 397 45 HOH HOH . F 6 HOH A 98 398 18 HOH HOH . F 6 HOH A 99 399 118 HOH HOH . F 6 HOH A 100 400 11 HOH HOH . F 6 HOH A 101 401 97 HOH HOH . F 6 HOH A 102 402 158 HOH HOH . F 6 HOH A 103 403 21 HOH HOH . F 6 HOH A 104 404 41 HOH HOH . F 6 HOH A 105 405 109 HOH HOH . F 6 HOH A 106 406 103 HOH HOH . F 6 HOH A 107 407 39 HOH HOH . F 6 HOH A 108 408 167 HOH HOH . F 6 HOH A 109 409 58 HOH HOH . F 6 HOH A 110 410 86 HOH HOH . F 6 HOH A 111 411 173 HOH HOH . F 6 HOH A 112 412 48 HOH HOH . F 6 HOH A 113 413 2 HOH HOH . F 6 HOH A 114 414 186 HOH HOH . F 6 HOH A 115 415 15 HOH HOH . F 6 HOH A 116 416 156 HOH HOH . F 6 HOH A 117 417 24 HOH HOH . F 6 HOH A 118 418 150 HOH HOH . F 6 HOH A 119 419 176 HOH HOH . F 6 HOH A 120 420 101 HOH HOH . F 6 HOH A 121 421 3 HOH HOH . F 6 HOH A 122 422 124 HOH HOH . F 6 HOH A 123 423 84 HOH HOH . F 6 HOH A 124 424 46 HOH HOH . F 6 HOH A 125 425 153 HOH HOH . F 6 HOH A 126 426 140 HOH HOH . F 6 HOH A 127 427 29 HOH HOH . F 6 HOH A 128 428 192 HOH HOH . F 6 HOH A 129 429 102 HOH HOH . F 6 HOH A 130 430 178 HOH HOH . F 6 HOH A 131 431 64 HOH HOH . F 6 HOH A 132 432 1 HOH HOH . F 6 HOH A 133 433 79 HOH HOH . F 6 HOH A 134 434 23 HOH HOH . F 6 HOH A 135 435 5 HOH HOH . F 6 HOH A 136 436 110 HOH HOH . F 6 HOH A 137 437 100 HOH HOH . F 6 HOH A 138 438 126 HOH HOH . F 6 HOH A 139 439 55 HOH HOH . F 6 HOH A 140 440 128 HOH HOH . F 6 HOH A 141 441 22 HOH HOH . F 6 HOH A 142 442 188 HOH HOH . F 6 HOH A 143 443 74 HOH HOH . F 6 HOH A 144 444 44 HOH HOH . F 6 HOH A 145 445 104 HOH HOH . F 6 HOH A 146 446 134 HOH HOH . F 6 HOH A 147 447 34 HOH HOH . F 6 HOH A 148 448 152 HOH HOH . F 6 HOH A 149 449 76 HOH HOH . F 6 HOH A 150 450 66 HOH HOH . F 6 HOH A 151 451 179 HOH HOH . F 6 HOH A 152 452 147 HOH HOH . F 6 HOH A 153 453 132 HOH HOH . F 6 HOH A 154 454 107 HOH HOH . F 6 HOH A 155 455 98 HOH HOH . F 6 HOH A 156 456 122 HOH HOH . F 6 HOH A 157 457 155 HOH HOH . F 6 HOH A 158 458 87 HOH HOH . F 6 HOH A 159 459 136 HOH HOH . F 6 HOH A 160 460 177 HOH HOH . F 6 HOH A 161 461 99 HOH HOH . F 6 HOH A 162 462 163 HOH HOH . F 6 HOH A 163 463 47 HOH HOH . F 6 HOH A 164 464 70 HOH HOH . F 6 HOH A 165 465 96 HOH HOH . F 6 HOH A 166 466 146 HOH HOH . F 6 HOH A 167 467 185 HOH HOH . F 6 HOH A 168 468 57 HOH HOH . F 6 HOH A 169 469 106 HOH HOH . F 6 HOH A 170 470 12 HOH HOH . F 6 HOH A 171 471 80 HOH HOH . F 6 HOH A 172 472 113 HOH HOH . F 6 HOH A 173 473 168 HOH HOH . F 6 HOH A 174 474 162 HOH HOH . F 6 HOH A 175 475 190 HOH HOH . F 6 HOH A 176 476 194 HOH HOH . F 6 HOH A 177 477 149 HOH HOH . F 6 HOH A 178 478 77 HOH HOH . F 6 HOH A 179 479 181 HOH HOH . F 6 HOH A 180 480 37 HOH HOH . F 6 HOH A 181 481 166 HOH HOH . F 6 HOH A 182 482 119 HOH HOH . F 6 HOH A 183 483 67 HOH HOH . F 6 HOH A 184 484 164 HOH HOH . F 6 HOH A 185 485 175 HOH HOH . F 6 HOH A 186 486 108 HOH HOH . F 6 HOH A 187 487 40 HOH HOH . F 6 HOH A 188 488 171 HOH HOH . F 6 HOH A 189 489 193 HOH HOH . F 6 HOH A 190 490 27 HOH HOH . F 6 HOH A 191 491 191 HOH HOH . F 6 HOH A 192 492 161 HOH HOH . F 6 HOH A 193 493 111 HOH HOH . F 6 HOH A 194 494 112 HOH HOH . F 6 HOH A 195 495 72 HOH HOH . F 6 HOH A 196 496 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 XJT . . . B 2 -1.397 -7.535 12.787 1 7.17 ? N1 XJT 201 A 1 HETATM 2 C C2 XJT . . . B 2 -0.397 -10.905 12.676 1 5.93 ? C2 XJT 201 A 1 HETATM 3 C C3 XJT . . . B 2 -0.682 -11.332 14.011 1 6.35 ? C3 XJT 201 A 1 HETATM 4 C C4 XJT . . . B 2 -1.253 -13.675 13.853 1 7.07 ? C4 XJT 201 A 1 HETATM 5 C C6 XJT . . . B 2 -1.041 -15.095 15.955 1 8.68 ? C6 XJT 201 A 1 HETATM 6 C C7 XJT . . . B 2 -2.941 -15.163 17.417 1 9.66 ? C7 XJT 201 A 1 HETATM 7 C C8 XJT . . . B 2 -2.114 -15.293 18.521 1 11.18 ? C8 XJT 201 A 1 HETATM 8 C C9 XJT . . . B 2 -2.662 -15.333 19.79 1 12.05 ? C9 XJT 201 A 1 HETATM 9 C C10 XJT . . . B 2 -4.022 -15.235 19.957 1 12.69 ? C10 XJT 201 A 1 HETATM 10 C C11 XJT . . . B 2 -4.843 -15.091 18.852 1 11.57 ? C11 XJT 201 A 1 HETATM 11 C C12 XJT . . . B 2 -4.332 -15.053 17.556 1 10.81 ? C12 XJT 201 A 1 HETATM 12 C C13 XJT . . . B 2 -5.226 -14.884 16.341 1 11.1 ? C13 XJT 201 A 1 HETATM 13 C C15 XJT . . . B 2 -7.56 -15.098 15.348 1 12.34 ? C15 XJT 201 A 1 HETATM 14 C C19 XJT . . . B 2 -1.48 -9.781 18.566 1 8.57 ? C19 XJT 201 A 1 HETATM 15 C C20 XJT . . . B 2 -1.024 -8.713 19.503 1 11.57 ? C20 XJT 201 A 1 HETATM 16 C C23 XJT . . . B 2 -2.31 -11.699 16.77 1 7 ? C23 XJT 201 A 1 HETATM 17 C C1 XJT . . . B 2 -1.146 -8.8 13.172 1 6.23 ? C1 XJT 201 A 1 HETATM 18 C C14 XJT . . . B 2 -6.672 -15.286 16.57 1 12.18 ? C14 XJT 201 A 1 HETATM 19 C C16 XJT . . . B 2 -1.187 -10.381 14.884 1 6.38 ? C16 XJT 201 A 1 HETATM 20 C C17 XJT . . . B 2 -1.551 -10.627 16.312 1 6.73 ? C17 XJT 201 A 1 HETATM 21 C C18 XJT . . . B 2 -1.182 -9.67 17.217 1 7.42 ? C18 XJT 201 A 1 HETATM 22 C C21 XJT . . . B 2 -2.235 -10.853 19.022 1 8 ? C21 XJT 201 A 1 HETATM 23 C C22 XJT . . . B 2 -2.648 -11.815 18.114 1 7.96 ? C22 XJT 201 A 1 HETATM 24 C C5 XJT . . . B 2 -0.794 -14.971 14.472 1 7.93 ? C5 XJT 201 A 1 HETATM 25 F F1 XJT . . . B 2 -1.993 -7.87 19.827 1 12.83 ? F1 XJT 201 A 1 HETATM 26 F F2 XJT . . . B 2 -0.052 -7.95 18.998 1 13.66 ? F2 XJT 201 A 1 HETATM 27 F F3 XJT . . . B 2 -0.538 -9.174 20.649 1 12.96 ? F3 XJT 201 A 1 HETATM 28 N N2 XJT . . . B 2 -0.626 -9.652 12.271 1 6.29 ? N2 XJT 201 A 1 HETATM 29 N N3 XJT . . . B 2 0.16 -11.76 11.776 1 6.17 ? N3 XJT 201 A 1 HETATM 30 N N4 XJT . . . B 2 -1.423 -9.129 14.449 1 6.19 ? N4 XJT 201 A 1 HETATM 31 O O1 XJT . . . B 2 -0.453 -12.623 14.424 1 6.69 ? O1 XJT 201 A 1 HETATM 32 O O2 XJT . . . B 2 -2.467 -15.106 16.136 1 8.83 ? O2 XJT 201 A 1 HETATM 33 O O3 XJT . . . B 2 -8.67 -15.66 15.354 1 14.34 ? O3 XJT 201 A 1 HETATM 34 O O4 XJT . . . B 2 -7.156 -14.394 14.399 1 11.81 ? O4 XJT 201 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #