data_8F83
#
_model_server_result.job_id            IK7hQzOacftza5vArh42-Q 
_model_server_result.datetime_utc      '2024-11-15 20:53:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8f83 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    8F83 
#
_exptl.entry_id    8F83 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              476.448 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-{2-[3-({2,4-diamino-6-[4-(trifluoromethyl)phenyl]pyrimidin-5-yl}oxy)propoxy]phenyl}propanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.28 
_cell.angle_gamma         90 
_cell.entry_id            8F83 
_cell.length_a            29.225 
_cell.length_b            70.758 
_cell.length_c            36.067 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8F83 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C23 H23 F3 N4 O4' 
_chem_comp.formula_weight    476.448 
_chem_comp.id                XJZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-{2-[3-({2,4-diamino-6-[4-(trifluoromethyl)phenyl]pyrimidin-5-yl}oxy)propoxy]phenyl}propanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C1 XJZ sing 466 n n 
C1 N4 XJZ doub 467 n y 
C1 N2 XJZ sing 468 n y 
N4 C16 XJZ sing 469 n y 
N2 C2 XJZ doub 470 n y 
C23 C22 XJZ doub 471 n y 
C23 C17 XJZ sing 472 n y 
C16 C17 XJZ sing 473 n n 
C16 C3 XJZ doub 474 n y 
C2 N3 XJZ sing 475 n n 
C2 C3 XJZ sing 476 n y 
C22 C20 XJZ sing 477 n y 
C17 C18 XJZ doub 478 n y 
C3 O1 XJZ sing 479 n n 
F3 C21 XJZ sing 480 n n 
C20 C21 XJZ sing 481 n n 
C20 C19 XJZ doub 482 n y 
C18 C19 XJZ sing 483 n y 
C21 F2 XJZ sing 484 n n 
C21 F1 XJZ sing 485 n n 
O1 C4 XJZ sing 486 n n 
C4 C5 XJZ sing 487 n n 
O3 C15 XJZ doub 488 n n 
C15 C14 XJZ sing 489 n n 
C15 O4 XJZ sing 490 n n 
C5 C6 XJZ sing 491 n n 
C13 C12 XJZ sing 492 n n 
C13 C14 XJZ sing 493 n n 
O2 C6 XJZ sing 494 n n 
O2 C7 XJZ sing 495 n n 
C12 C7 XJZ doub 496 n y 
C12 C11 XJZ sing 497 n y 
C7 C8 XJZ sing 498 n y 
C11 C10 XJZ doub 499 n y 
C8 C9 XJZ doub 500 n y 
C10 C9 XJZ sing 501 n y 
C4 H1 XJZ sing 502 n n 
C4 H2 XJZ sing 503 n n 
C5 H3 XJZ sing 504 n n 
C5 H4 XJZ sing 505 n n 
C6 H5 XJZ sing 506 n n 
C6 H6 XJZ sing 507 n n 
C22 H7 XJZ sing 508 n n 
C23 H8 XJZ sing 509 n n 
O4 H9 XJZ sing 510 n n 
C10 H10 XJZ sing 511 n n 
C11 H11 XJZ sing 512 n n 
C13 H12 XJZ sing 513 n n 
C13 H13 XJZ sing 514 n n 
C14 H14 XJZ sing 515 n n 
C14 H15 XJZ sing 516 n n 
C18 H16 XJZ sing 517 n n 
C19 H17 XJZ sing 518 n n 
C8 H18 XJZ sing 519 n n 
C9 H19 XJZ sing 520 n n 
N1 H20 XJZ sing 521 n n 
N1 H21 XJZ sing 522 n n 
N3 H22 XJZ sing 523 n n 
N3 H23 XJZ sing 524 n n 
#
_atom_sites.entry_id                     8F83 
_atom_sites.fract_transf_matrix[1][1]    0.034217 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.013327 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014133 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.029755 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP A 1 201 201 NAP NAP . 
C 3 XJZ A 1 202 202 XJZ 846 . 
D 4 IMD A 1 203 1 IMD IMD . 
E 5 HOH A 1 301 178 HOH HOH . 
E 5 HOH A 2 302 176 HOH HOH . 
E 5 HOH A 3 303 144 HOH HOH . 
E 5 HOH A 4 304 143 HOH HOH . 
E 5 HOH A 5 305 99 HOH HOH . 
E 5 HOH A 6 306 72 HOH HOH . 
E 5 HOH A 7 307 119 HOH HOH . 
E 5 HOH A 8 308 1 HOH HOH . 
E 5 HOH A 9 309 97 HOH HOH . 
E 5 HOH A 10 310 79 HOH HOH . 
E 5 HOH A 11 311 118 HOH HOH . 
E 5 HOH A 12 312 123 HOH HOH . 
E 5 HOH A 13 313 30 HOH HOH . 
E 5 HOH A 14 314 117 HOH HOH . 
E 5 HOH A 15 315 88 HOH HOH . 
E 5 HOH A 16 316 174 HOH HOH . 
E 5 HOH A 17 317 103 HOH HOH . 
E 5 HOH A 18 318 93 HOH HOH . 
E 5 HOH A 19 319 80 HOH HOH . 
E 5 HOH A 20 320 12 HOH HOH . 
E 5 HOH A 21 321 62 HOH HOH . 
E 5 HOH A 22 322 142 HOH HOH . 
E 5 HOH A 23 323 172 HOH HOH . 
E 5 HOH A 24 324 18 HOH HOH . 
E 5 HOH A 25 325 21 HOH HOH . 
E 5 HOH A 26 326 169 HOH HOH . 
E 5 HOH A 27 327 7 HOH HOH . 
E 5 HOH A 28 328 175 HOH HOH . 
E 5 HOH A 29 329 27 HOH HOH . 
E 5 HOH A 30 330 26 HOH HOH . 
E 5 HOH A 31 331 89 HOH HOH . 
E 5 HOH A 32 332 100 HOH HOH . 
E 5 HOH A 33 333 40 HOH HOH . 
E 5 HOH A 34 334 134 HOH HOH . 
E 5 HOH A 35 335 130 HOH HOH . 
E 5 HOH A 36 336 39 HOH HOH . 
E 5 HOH A 37 337 13 HOH HOH . 
E 5 HOH A 38 338 94 HOH HOH . 
E 5 HOH A 39 339 14 HOH HOH . 
E 5 HOH A 40 340 5 HOH HOH . 
E 5 HOH A 41 341 59 HOH HOH . 
E 5 HOH A 42 342 32 HOH HOH . 
E 5 HOH A 43 343 81 HOH HOH . 
E 5 HOH A 44 344 129 HOH HOH . 
E 5 HOH A 45 345 112 HOH HOH . 
E 5 HOH A 46 346 42 HOH HOH . 
E 5 HOH A 47 347 8 HOH HOH . 
E 5 HOH A 48 348 86 HOH HOH . 
E 5 HOH A 49 349 181 HOH HOH . 
E 5 HOH A 50 350 23 HOH HOH . 
E 5 HOH A 51 351 54 HOH HOH . 
E 5 HOH A 52 352 68 HOH HOH . 
E 5 HOH A 53 353 16 HOH HOH . 
E 5 HOH A 54 354 162 HOH HOH . 
E 5 HOH A 55 355 44 HOH HOH . 
E 5 HOH A 56 356 84 HOH HOH . 
E 5 HOH A 57 357 158 HOH HOH . 
E 5 HOH A 58 358 120 HOH HOH . 
E 5 HOH A 59 359 19 HOH HOH . 
E 5 HOH A 60 360 9 HOH HOH . 
E 5 HOH A 61 361 45 HOH HOH . 
E 5 HOH A 62 362 43 HOH HOH . 
E 5 HOH A 63 363 98 HOH HOH . 
E 5 HOH A 64 364 11 HOH HOH . 
E 5 HOH A 65 365 22 HOH HOH . 
E 5 HOH A 66 366 126 HOH HOH . 
E 5 HOH A 67 367 75 HOH HOH . 
E 5 HOH A 68 368 82 HOH HOH . 
E 5 HOH A 69 369 35 HOH HOH . 
E 5 HOH A 70 370 125 HOH HOH . 
E 5 HOH A 71 371 70 HOH HOH . 
E 5 HOH A 72 372 2 HOH HOH . 
E 5 HOH A 73 373 33 HOH HOH . 
E 5 HOH A 74 374 63 HOH HOH . 
E 5 HOH A 75 375 31 HOH HOH . 
E 5 HOH A 76 376 61 HOH HOH . 
E 5 HOH A 77 377 29 HOH HOH . 
E 5 HOH A 78 378 164 HOH HOH . 
E 5 HOH A 79 379 25 HOH HOH . 
E 5 HOH A 80 380 141 HOH HOH . 
E 5 HOH A 81 381 47 HOH HOH . 
E 5 HOH A 82 382 132 HOH HOH . 
E 5 HOH A 83 383 6 HOH HOH . 
E 5 HOH A 84 384 91 HOH HOH . 
E 5 HOH A 85 385 58 HOH HOH . 
E 5 HOH A 86 386 114 HOH HOH . 
E 5 HOH A 87 387 51 HOH HOH . 
E 5 HOH A 88 388 34 HOH HOH . 
E 5 HOH A 89 389 17 HOH HOH . 
E 5 HOH A 90 390 83 HOH HOH . 
E 5 HOH A 91 391 152 HOH HOH . 
E 5 HOH A 92 392 122 HOH HOH . 
E 5 HOH A 93 393 49 HOH HOH . 
E 5 HOH A 94 394 115 HOH HOH . 
E 5 HOH A 95 395 116 HOH HOH . 
E 5 HOH A 96 396 67 HOH HOH . 
E 5 HOH A 97 397 60 HOH HOH . 
E 5 HOH A 98 398 53 HOH HOH . 
E 5 HOH A 99 399 15 HOH HOH . 
E 5 HOH A 100 400 148 HOH HOH . 
E 5 HOH A 101 401 95 HOH HOH . 
E 5 HOH A 102 402 73 HOH HOH . 
E 5 HOH A 103 403 24 HOH HOH . 
E 5 HOH A 104 404 76 HOH HOH . 
E 5 HOH A 105 405 71 HOH HOH . 
E 5 HOH A 106 406 69 HOH HOH . 
E 5 HOH A 107 407 57 HOH HOH . 
E 5 HOH A 108 408 52 HOH HOH . 
E 5 HOH A 109 409 101 HOH HOH . 
E 5 HOH A 110 410 107 HOH HOH . 
E 5 HOH A 111 411 56 HOH HOH . 
E 5 HOH A 112 412 20 HOH HOH . 
E 5 HOH A 113 413 127 HOH HOH . 
E 5 HOH A 114 414 133 HOH HOH . 
E 5 HOH A 115 415 4 HOH HOH . 
E 5 HOH A 116 416 163 HOH HOH . 
E 5 HOH A 117 417 3 HOH HOH . 
E 5 HOH A 118 418 78 HOH HOH . 
E 5 HOH A 119 419 41 HOH HOH . 
E 5 HOH A 120 420 55 HOH HOH . 
E 5 HOH A 121 421 113 HOH HOH . 
E 5 HOH A 122 422 156 HOH HOH . 
E 5 HOH A 123 423 64 HOH HOH . 
E 5 HOH A 124 424 48 HOH HOH . 
E 5 HOH A 125 425 157 HOH HOH . 
E 5 HOH A 126 426 179 HOH HOH . 
E 5 HOH A 127 427 92 HOH HOH . 
E 5 HOH A 128 428 109 HOH HOH . 
E 5 HOH A 129 429 38 HOH HOH . 
E 5 HOH A 130 430 96 HOH HOH . 
E 5 HOH A 131 431 180 HOH HOH . 
E 5 HOH A 132 432 50 HOH HOH . 
E 5 HOH A 133 433 28 HOH HOH . 
E 5 HOH A 134 434 166 HOH HOH . 
E 5 HOH A 135 435 85 HOH HOH . 
E 5 HOH A 136 436 177 HOH HOH . 
E 5 HOH A 137 437 128 HOH HOH . 
E 5 HOH A 138 438 135 HOH HOH . 
E 5 HOH A 139 439 124 HOH HOH . 
E 5 HOH A 140 440 102 HOH HOH . 
E 5 HOH A 141 441 111 HOH HOH . 
E 5 HOH A 142 442 65 HOH HOH . 
E 5 HOH A 143 443 131 HOH HOH . 
E 5 HOH A 144 444 104 HOH HOH . 
E 5 HOH A 145 445 161 HOH HOH . 
E 5 HOH A 146 446 136 HOH HOH . 
E 5 HOH A 147 447 159 HOH HOH . 
E 5 HOH A 148 448 173 HOH HOH . 
E 5 HOH A 149 449 74 HOH HOH . 
E 5 HOH A 150 450 121 HOH HOH . 
E 5 HOH A 151 451 37 HOH HOH . 
E 5 HOH A 152 452 160 HOH HOH . 
E 5 HOH A 153 453 146 HOH HOH . 
E 5 HOH A 154 454 140 HOH HOH . 
E 5 HOH A 155 455 36 HOH HOH . 
E 5 HOH A 156 456 137 HOH HOH . 
E 5 HOH A 157 457 139 HOH HOH . 
E 5 HOH A 158 458 165 HOH HOH . 
E 5 HOH A 159 459 167 HOH HOH . 
E 5 HOH A 160 460 90 HOH HOH . 
E 5 HOH A 161 461 168 HOH HOH . 
E 5 HOH A 162 462 66 HOH HOH . 
E 5 HOH A 163 463 46 HOH HOH . 
E 5 HOH A 164 464 10 HOH HOH . 
E 5 HOH A 165 465 138 HOH HOH . 
E 5 HOH A 166 466 155 HOH HOH . 
E 5 HOH A 167 467 108 HOH HOH . 
E 5 HOH A 168 468 149 HOH HOH . 
E 5 HOH A 169 469 171 HOH HOH . 
E 5 HOH A 170 470 77 HOH HOH . 
E 5 HOH A 171 471 106 HOH HOH . 
E 5 HOH A 172 472 87 HOH HOH . 
E 5 HOH A 173 473 147 HOH HOH . 
E 5 HOH A 174 474 170 HOH HOH . 
E 5 HOH A 175 475 151 HOH HOH . 
E 5 HOH A 176 476 154 HOH HOH . 
E 5 HOH A 177 477 150 HOH HOH . 
E 5 HOH A 178 478 145 HOH HOH . 
E 5 HOH A 179 479 105 HOH HOH . 
E 5 HOH A 180 480 153 HOH HOH . 
E 5 HOH A 181 481 110 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 XJZ . . . C 3 -6.684 3.732 9.226 1 8.77 ? C1 XJZ 202 A 1 
HETATM 2 C C2 XJZ . . . C 3 -6.026 2.789 11.195 1 10.08 ? C2 XJZ 202 A 1 
HETATM 3 C C3 XJZ . . . C 3 -6.266 4.034 11.863 1 10.15 ? C3 XJZ 202 A 1 
HETATM 4 C C4 XJZ . . . C 3 -6.838 3.499 14.167 1 14.91 ? C4 XJZ 202 A 1 
HETATM 5 C C5 XJZ . . . C 3 -6.391 3.865 15.563 1 12.83 ? C5 XJZ 202 A 1 
HETATM 6 C C6 XJZ . . . C 3 -6.674 5.31 15.906 1 13.56 ? C6 XJZ 202 A 1 
HETATM 7 C C7 XJZ . . . C 3 -8.58 6.789 16.117 1 14.88 ? C7 XJZ 202 A 1 
HETATM 8 C C20 XJZ . . . C 3 -7.212 9.087 12.534 1 16.29 ? C20 XJZ 202 A 1 
HETATM 9 C C21 XJZ . . . C 3 -7.319 10.491 13.036 1 19.77 ? C21 XJZ 202 A 1 
HETATM 10 C C22 XJZ . . . C 3 -6.355 8.792 11.49 1 16.6 ? C22 XJZ 202 A 1 
HETATM 11 C C23 XJZ . . . C 3 -6.229 7.487 11.061 1 14.79 ? C23 XJZ 202 A 1 
HETATM 12 N N2 XJZ . . . C 3 -6.263 2.642 9.882 1 8.71 ? N2 XJZ 202 A 1 
HETATM 13 O O1 XJZ . . . C 3 -6.005 4.194 13.214 1 10.58 ? O1 XJZ 202 A 1 
HETATM 14 O O4 XJZ . . . C 3 -14.393 4.767 16.044 1 18.68 ? O4 XJZ 202 A 1 
HETATM 15 C C10 XJZ . . . C 3 -9.634 9.322 16.512 1 19.27 ? C10 XJZ 202 A 1 
HETATM 16 C C11 XJZ . . . C 3 -10.465 8.253 16.209 1 18.67 ? C11 XJZ 202 A 1 
HETATM 17 C C12 XJZ . . . C 3 -9.973 6.96 16.01 1 17 ? C12 XJZ 202 A 1 
HETATM 18 C C13 XJZ . . . C 3 -10.882 5.791 15.652 1 17.4 ? C13 XJZ 202 A 1 
HETATM 19 C C14 XJZ . . . C 3 -12.338 5.959 16.044 1 17.71 ? C14 XJZ 202 A 1 
HETATM 20 C C15 XJZ . . . C 3 -13.244 4.828 15.562 1 16.19 ? C15 XJZ 202 A 1 
HETATM 21 C C16 XJZ . . . C 3 -6.708 5.096 11.102 1 10.47 ? C16 XJZ 202 A 1 
HETATM 22 C C17 XJZ . . . C 3 -6.979 6.462 11.628 1 11.18 ? C17 XJZ 202 A 1 
HETATM 23 C C18 XJZ . . . C 3 -7.764 6.757 12.736 1 12.74 ? C18 XJZ 202 A 1 
HETATM 24 C C19 XJZ . . . C 3 -7.91 8.068 13.165 1 15.27 ? C19 XJZ 202 A 1 
HETATM 25 C C8 XJZ . . . C 3 -7.746 7.854 16.428 1 17.3 ? C8 XJZ 202 A 1 
HETATM 26 C C9 XJZ . . . C 3 -8.277 9.117 16.616 1 17.99 ? C9 XJZ 202 A 1 
HETATM 27 F F1 XJZ . . . C 3 -6.623 10.628 14.159 1 23.47 ? F1 XJZ 202 A 1 
HETATM 28 F F2 XJZ . . . C 3 -8.541 10.855 13.342 1 23.31 ? F2 XJZ 202 A 1 
HETATM 29 F F3 XJZ . . . C 3 -6.841 11.434 12.196 1 21.61 ? F3 XJZ 202 A 1 
HETATM 30 N N1 XJZ . . . C 3 -6.937 3.596 7.907 1 9.88 ? N1 XJZ 202 A 1 
HETATM 31 N N3 XJZ . . . C 3 -5.512 1.719 11.858 1 11.77 ? N3 XJZ 202 A 1 
HETATM 32 N N4 XJZ . . . C 3 -6.903 4.945 9.78 1 9.54 ? N4 XJZ 202 A 1 
HETATM 33 O O2 XJZ . . . C 3 -8.106 5.525 15.898 1 14.58 ? O2 XJZ 202 A 1 
HETATM 34 O O3 XJZ . . . C 3 -12.817 4.013 14.718 1 15.87 ? O3 XJZ 202 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           34 
#