data_8F83 # _model_server_result.job_id 5uWdxizg8qCmAab7twtvAw _model_server_result.datetime_utc '2024-11-15 20:46:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f83 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 8F83 # _exptl.entry_id 8F83 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.28 _cell.angle_gamma 90 _cell.entry_id 8F83 _cell.length_a 29.225 _cell.length_b 70.758 _cell.length_c 36.067 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F83 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 173 n y N1 C5 IMD sing 174 n y N1 HN1 IMD sing 175 n n C2 N3 IMD doub 176 n y C2 H2 IMD sing 177 n n N3 C4 IMD sing 178 n y N3 HN3 IMD sing 179 n n C4 C5 IMD doub 180 n y C4 H4 IMD sing 181 n n C5 H5 IMD sing 182 n n # _atom_sites.entry_id 8F83 _atom_sites.fract_transf_matrix[1][1] 0.034217 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.013327 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014133 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029755 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 201 NAP NAP . C 3 XJZ A 1 202 202 XJZ 846 . D 4 IMD A 1 203 1 IMD IMD . E 5 HOH A 1 301 178 HOH HOH . E 5 HOH A 2 302 176 HOH HOH . E 5 HOH A 3 303 144 HOH HOH . E 5 HOH A 4 304 143 HOH HOH . E 5 HOH A 5 305 99 HOH HOH . E 5 HOH A 6 306 72 HOH HOH . E 5 HOH A 7 307 119 HOH HOH . E 5 HOH A 8 308 1 HOH HOH . E 5 HOH A 9 309 97 HOH HOH . E 5 HOH A 10 310 79 HOH HOH . E 5 HOH A 11 311 118 HOH HOH . E 5 HOH A 12 312 123 HOH HOH . E 5 HOH A 13 313 30 HOH HOH . E 5 HOH A 14 314 117 HOH HOH . E 5 HOH A 15 315 88 HOH HOH . E 5 HOH A 16 316 174 HOH HOH . E 5 HOH A 17 317 103 HOH HOH . E 5 HOH A 18 318 93 HOH HOH . E 5 HOH A 19 319 80 HOH HOH . E 5 HOH A 20 320 12 HOH HOH . E 5 HOH A 21 321 62 HOH HOH . E 5 HOH A 22 322 142 HOH HOH . E 5 HOH A 23 323 172 HOH HOH . E 5 HOH A 24 324 18 HOH HOH . E 5 HOH A 25 325 21 HOH HOH . E 5 HOH A 26 326 169 HOH HOH . E 5 HOH A 27 327 7 HOH HOH . E 5 HOH A 28 328 175 HOH HOH . E 5 HOH A 29 329 27 HOH HOH . E 5 HOH A 30 330 26 HOH HOH . E 5 HOH A 31 331 89 HOH HOH . E 5 HOH A 32 332 100 HOH HOH . E 5 HOH A 33 333 40 HOH HOH . E 5 HOH A 34 334 134 HOH HOH . E 5 HOH A 35 335 130 HOH HOH . E 5 HOH A 36 336 39 HOH HOH . E 5 HOH A 37 337 13 HOH HOH . E 5 HOH A 38 338 94 HOH HOH . E 5 HOH A 39 339 14 HOH HOH . E 5 HOH A 40 340 5 HOH HOH . E 5 HOH A 41 341 59 HOH HOH . E 5 HOH A 42 342 32 HOH HOH . E 5 HOH A 43 343 81 HOH HOH . E 5 HOH A 44 344 129 HOH HOH . E 5 HOH A 45 345 112 HOH HOH . E 5 HOH A 46 346 42 HOH HOH . E 5 HOH A 47 347 8 HOH HOH . E 5 HOH A 48 348 86 HOH HOH . E 5 HOH A 49 349 181 HOH HOH . E 5 HOH A 50 350 23 HOH HOH . E 5 HOH A 51 351 54 HOH HOH . E 5 HOH A 52 352 68 HOH HOH . E 5 HOH A 53 353 16 HOH HOH . E 5 HOH A 54 354 162 HOH HOH . E 5 HOH A 55 355 44 HOH HOH . E 5 HOH A 56 356 84 HOH HOH . E 5 HOH A 57 357 158 HOH HOH . E 5 HOH A 58 358 120 HOH HOH . E 5 HOH A 59 359 19 HOH HOH . E 5 HOH A 60 360 9 HOH HOH . E 5 HOH A 61 361 45 HOH HOH . E 5 HOH A 62 362 43 HOH HOH . E 5 HOH A 63 363 98 HOH HOH . E 5 HOH A 64 364 11 HOH HOH . E 5 HOH A 65 365 22 HOH HOH . E 5 HOH A 66 366 126 HOH HOH . E 5 HOH A 67 367 75 HOH HOH . E 5 HOH A 68 368 82 HOH HOH . E 5 HOH A 69 369 35 HOH HOH . E 5 HOH A 70 370 125 HOH HOH . E 5 HOH A 71 371 70 HOH HOH . E 5 HOH A 72 372 2 HOH HOH . E 5 HOH A 73 373 33 HOH HOH . E 5 HOH A 74 374 63 HOH HOH . E 5 HOH A 75 375 31 HOH HOH . E 5 HOH A 76 376 61 HOH HOH . E 5 HOH A 77 377 29 HOH HOH . E 5 HOH A 78 378 164 HOH HOH . E 5 HOH A 79 379 25 HOH HOH . E 5 HOH A 80 380 141 HOH HOH . E 5 HOH A 81 381 47 HOH HOH . E 5 HOH A 82 382 132 HOH HOH . E 5 HOH A 83 383 6 HOH HOH . E 5 HOH A 84 384 91 HOH HOH . E 5 HOH A 85 385 58 HOH HOH . E 5 HOH A 86 386 114 HOH HOH . E 5 HOH A 87 387 51 HOH HOH . E 5 HOH A 88 388 34 HOH HOH . E 5 HOH A 89 389 17 HOH HOH . E 5 HOH A 90 390 83 HOH HOH . E 5 HOH A 91 391 152 HOH HOH . E 5 HOH A 92 392 122 HOH HOH . E 5 HOH A 93 393 49 HOH HOH . E 5 HOH A 94 394 115 HOH HOH . E 5 HOH A 95 395 116 HOH HOH . E 5 HOH A 96 396 67 HOH HOH . E 5 HOH A 97 397 60 HOH HOH . E 5 HOH A 98 398 53 HOH HOH . E 5 HOH A 99 399 15 HOH HOH . E 5 HOH A 100 400 148 HOH HOH . E 5 HOH A 101 401 95 HOH HOH . E 5 HOH A 102 402 73 HOH HOH . E 5 HOH A 103 403 24 HOH HOH . E 5 HOH A 104 404 76 HOH HOH . E 5 HOH A 105 405 71 HOH HOH . E 5 HOH A 106 406 69 HOH HOH . E 5 HOH A 107 407 57 HOH HOH . E 5 HOH A 108 408 52 HOH HOH . E 5 HOH A 109 409 101 HOH HOH . E 5 HOH A 110 410 107 HOH HOH . E 5 HOH A 111 411 56 HOH HOH . E 5 HOH A 112 412 20 HOH HOH . E 5 HOH A 113 413 127 HOH HOH . E 5 HOH A 114 414 133 HOH HOH . E 5 HOH A 115 415 4 HOH HOH . E 5 HOH A 116 416 163 HOH HOH . E 5 HOH A 117 417 3 HOH HOH . E 5 HOH A 118 418 78 HOH HOH . E 5 HOH A 119 419 41 HOH HOH . E 5 HOH A 120 420 55 HOH HOH . E 5 HOH A 121 421 113 HOH HOH . E 5 HOH A 122 422 156 HOH HOH . E 5 HOH A 123 423 64 HOH HOH . E 5 HOH A 124 424 48 HOH HOH . E 5 HOH A 125 425 157 HOH HOH . E 5 HOH A 126 426 179 HOH HOH . E 5 HOH A 127 427 92 HOH HOH . E 5 HOH A 128 428 109 HOH HOH . E 5 HOH A 129 429 38 HOH HOH . E 5 HOH A 130 430 96 HOH HOH . E 5 HOH A 131 431 180 HOH HOH . E 5 HOH A 132 432 50 HOH HOH . E 5 HOH A 133 433 28 HOH HOH . E 5 HOH A 134 434 166 HOH HOH . E 5 HOH A 135 435 85 HOH HOH . E 5 HOH A 136 436 177 HOH HOH . E 5 HOH A 137 437 128 HOH HOH . E 5 HOH A 138 438 135 HOH HOH . E 5 HOH A 139 439 124 HOH HOH . E 5 HOH A 140 440 102 HOH HOH . E 5 HOH A 141 441 111 HOH HOH . E 5 HOH A 142 442 65 HOH HOH . E 5 HOH A 143 443 131 HOH HOH . E 5 HOH A 144 444 104 HOH HOH . E 5 HOH A 145 445 161 HOH HOH . E 5 HOH A 146 446 136 HOH HOH . E 5 HOH A 147 447 159 HOH HOH . E 5 HOH A 148 448 173 HOH HOH . E 5 HOH A 149 449 74 HOH HOH . E 5 HOH A 150 450 121 HOH HOH . E 5 HOH A 151 451 37 HOH HOH . E 5 HOH A 152 452 160 HOH HOH . E 5 HOH A 153 453 146 HOH HOH . E 5 HOH A 154 454 140 HOH HOH . E 5 HOH A 155 455 36 HOH HOH . E 5 HOH A 156 456 137 HOH HOH . E 5 HOH A 157 457 139 HOH HOH . E 5 HOH A 158 458 165 HOH HOH . E 5 HOH A 159 459 167 HOH HOH . E 5 HOH A 160 460 90 HOH HOH . E 5 HOH A 161 461 168 HOH HOH . E 5 HOH A 162 462 66 HOH HOH . E 5 HOH A 163 463 46 HOH HOH . E 5 HOH A 164 464 10 HOH HOH . E 5 HOH A 165 465 138 HOH HOH . E 5 HOH A 166 466 155 HOH HOH . E 5 HOH A 167 467 108 HOH HOH . E 5 HOH A 168 468 149 HOH HOH . E 5 HOH A 169 469 171 HOH HOH . E 5 HOH A 170 470 77 HOH HOH . E 5 HOH A 171 471 106 HOH HOH . E 5 HOH A 172 472 87 HOH HOH . E 5 HOH A 173 473 147 HOH HOH . E 5 HOH A 174 474 170 HOH HOH . E 5 HOH A 175 475 151 HOH HOH . E 5 HOH A 176 476 154 HOH HOH . E 5 HOH A 177 477 150 HOH HOH . E 5 HOH A 178 478 145 HOH HOH . E 5 HOH A 179 479 105 HOH HOH . E 5 HOH A 180 480 153 HOH HOH . E 5 HOH A 181 481 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . D 4 -1.055 13.347 -5.85 1 19.92 ? N1 IMD 203 A 1 HETATM 2 C C2 IMD . . . D 4 -2.12 12.644 -6.357 1 19.92 ? C2 IMD 203 A 1 HETATM 3 N N3 IMD . . . D 4 -2.24 12.961 -7.644 1 19.92 ? N3 IMD 203 A 1 HETATM 4 C C4 IMD . . . D 4 -1.272 13.878 -7.965 1 19.92 ? C4 IMD 203 A 1 HETATM 5 C C5 IMD . . . D 4 -0.534 14.109 -6.84 1 19.92 ? C5 IMD 203 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #