data_8F85 # _model_server_result.job_id evw_-bAxMVkRYxdkGJFErw _model_server_result.datetime_utc '2024-11-15 21:27:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f85 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 8F85 # _exptl.entry_id 8F85 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 476.448 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-{2-[3-({(6M)-2,4-diamino-6-[2-(trifluoromethyl)phenyl]pyrimidin-5-yl}oxy)propoxy]phenyl}propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.73 _cell.angle_gamma 90 _cell.entry_id 8F85 _cell.length_a 28.751 _cell.length_b 66.156 _cell.length_c 44.042 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F85 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H23 F3 N4 O4' _chem_comp.formula_weight 476.448 _chem_comp.id XKI _chem_comp.mon_nstd_flag . _chem_comp.name '3-{2-[3-({(6M)-2,4-diamino-6-[2-(trifluoromethyl)phenyl]pyrimidin-5-yl}oxy)propoxy]phenyl}propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C2 XKI sing 456 n n N2 C2 XKI doub 457 n y N2 C1 XKI sing 458 n y C2 C3 XKI sing 459 n y N1 C1 XKI sing 460 n n C1 N4 XKI doub 461 n y C3 O1 XKI sing 462 n n C3 C16 XKI doub 463 n y C4 O1 XKI sing 464 n n C4 C5 XKI sing 465 n n N4 C16 XKI sing 466 n y O3 C15 XKI doub 467 n n C5 C6 XKI sing 468 n n C16 C17 XKI sing 469 n n C15 O4 XKI sing 470 n n C15 C14 XKI sing 471 n n C6 O2 XKI sing 472 n n C17 C23 XKI doub 473 n y C17 C18 XKI sing 474 n y F3 C19 XKI sing 475 n n C23 C22 XKI sing 476 n y O2 C7 XKI sing 477 n n C13 C14 XKI sing 478 n n C13 C12 XKI sing 479 n n F2 C19 XKI sing 480 n n C19 C18 XKI sing 481 n n C19 F1 XKI sing 482 n n C18 C20 XKI doub 483 n y C22 C21 XKI doub 484 n y C7 C12 XKI doub 485 n y C7 C8 XKI sing 486 n y C12 C11 XKI sing 487 n y C20 C21 XKI sing 488 n y C8 C9 XKI doub 489 n y C11 C10 XKI doub 490 n y C9 C10 XKI sing 491 n y C8 H1 XKI sing 492 n n C9 H2 XKI sing 493 n n C14 H3 XKI sing 494 n n C14 H4 XKI sing 495 n n C13 H5 XKI sing 496 n n C13 H6 XKI sing 497 n n C11 H7 XKI sing 498 n n C10 H8 XKI sing 499 n n C5 H9 XKI sing 500 n n C5 H10 XKI sing 501 n n C4 H11 XKI sing 502 n n C4 H12 XKI sing 503 n n C21 H13 XKI sing 504 n n C20 H14 XKI sing 505 n n C22 H15 XKI sing 506 n n C23 H16 XKI sing 507 n n C6 H17 XKI sing 508 n n C6 H18 XKI sing 509 n n N1 H19 XKI sing 510 n n N1 H20 XKI sing 511 n n N3 H21 XKI sing 512 n n N3 H22 XKI sing 513 n n O4 H23 XKI sing 514 n n # _atom_sites.entry_id 8F85 _atom_sites.fract_transf_matrix[1][1] 0.034781 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001051 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022716 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 201 NAP NAP . C 3 XKI A 1 202 202 XKI 851 . D 4 HOH A 1 301 41 HOH HOH . D 4 HOH A 2 302 143 HOH HOH . D 4 HOH A 3 303 8 HOH HOH . D 4 HOH A 4 304 139 HOH HOH . D 4 HOH A 5 305 104 HOH HOH . D 4 HOH A 6 306 13 HOH HOH . D 4 HOH A 7 307 127 HOH HOH . D 4 HOH A 8 308 96 HOH HOH . D 4 HOH A 9 309 43 HOH HOH . D 4 HOH A 10 310 87 HOH HOH . D 4 HOH A 11 311 142 HOH HOH . D 4 HOH A 12 312 89 HOH HOH . D 4 HOH A 13 313 99 HOH HOH . D 4 HOH A 14 314 24 HOH HOH . D 4 HOH A 15 315 19 HOH HOH . D 4 HOH A 16 316 125 HOH HOH . D 4 HOH A 17 317 59 HOH HOH . D 4 HOH A 18 318 129 HOH HOH . D 4 HOH A 19 319 130 HOH HOH . D 4 HOH A 20 320 9 HOH HOH . D 4 HOH A 21 321 69 HOH HOH . D 4 HOH A 22 322 6 HOH HOH . D 4 HOH A 23 323 70 HOH HOH . D 4 HOH A 24 324 83 HOH HOH . D 4 HOH A 25 325 74 HOH HOH . D 4 HOH A 26 326 133 HOH HOH . D 4 HOH A 27 327 60 HOH HOH . D 4 HOH A 28 328 119 HOH HOH . D 4 HOH A 29 329 146 HOH HOH . D 4 HOH A 30 330 76 HOH HOH . D 4 HOH A 31 331 17 HOH HOH . D 4 HOH A 32 332 16 HOH HOH . D 4 HOH A 33 333 57 HOH HOH . D 4 HOH A 34 334 54 HOH HOH . D 4 HOH A 35 335 80 HOH HOH . D 4 HOH A 36 336 108 HOH HOH . D 4 HOH A 37 337 35 HOH HOH . D 4 HOH A 38 338 32 HOH HOH . D 4 HOH A 39 339 45 HOH HOH . D 4 HOH A 40 340 39 HOH HOH . D 4 HOH A 41 341 134 HOH HOH . D 4 HOH A 42 342 75 HOH HOH . D 4 HOH A 43 343 92 HOH HOH . D 4 HOH A 44 344 38 HOH HOH . D 4 HOH A 45 345 81 HOH HOH . D 4 HOH A 46 346 22 HOH HOH . D 4 HOH A 47 347 15 HOH HOH . D 4 HOH A 48 348 86 HOH HOH . D 4 HOH A 49 349 18 HOH HOH . D 4 HOH A 50 350 49 HOH HOH . D 4 HOH A 51 351 78 HOH HOH . D 4 HOH A 52 352 52 HOH HOH . D 4 HOH A 53 353 137 HOH HOH . D 4 HOH A 54 354 51 HOH HOH . D 4 HOH A 55 355 28 HOH HOH . D 4 HOH A 56 356 34 HOH HOH . D 4 HOH A 57 357 10 HOH HOH . D 4 HOH A 58 358 37 HOH HOH . D 4 HOH A 59 359 106 HOH HOH . D 4 HOH A 60 360 117 HOH HOH . D 4 HOH A 61 361 66 HOH HOH . D 4 HOH A 62 362 25 HOH HOH . D 4 HOH A 63 363 88 HOH HOH . D 4 HOH A 64 364 30 HOH HOH . D 4 HOH A 65 365 77 HOH HOH . D 4 HOH A 66 366 72 HOH HOH . D 4 HOH A 67 367 11 HOH HOH . D 4 HOH A 68 368 61 HOH HOH . D 4 HOH A 69 369 55 HOH HOH . D 4 HOH A 70 370 58 HOH HOH . D 4 HOH A 71 371 145 HOH HOH . D 4 HOH A 72 372 31 HOH HOH . D 4 HOH A 73 373 48 HOH HOH . D 4 HOH A 74 374 4 HOH HOH . D 4 HOH A 75 375 5 HOH HOH . D 4 HOH A 76 376 103 HOH HOH . D 4 HOH A 77 377 101 HOH HOH . D 4 HOH A 78 378 149 HOH HOH . D 4 HOH A 79 379 1 HOH HOH . D 4 HOH A 80 380 47 HOH HOH . D 4 HOH A 81 381 14 HOH HOH . D 4 HOH A 82 382 94 HOH HOH . D 4 HOH A 83 383 148 HOH HOH . D 4 HOH A 84 384 128 HOH HOH . D 4 HOH A 85 385 20 HOH HOH . D 4 HOH A 86 386 100 HOH HOH . D 4 HOH A 87 387 150 HOH HOH . D 4 HOH A 88 388 68 HOH HOH . D 4 HOH A 89 389 140 HOH HOH . D 4 HOH A 90 390 29 HOH HOH . D 4 HOH A 91 391 79 HOH HOH . D 4 HOH A 92 392 44 HOH HOH . D 4 HOH A 93 393 3 HOH HOH . D 4 HOH A 94 394 2 HOH HOH . D 4 HOH A 95 395 138 HOH HOH . D 4 HOH A 96 396 91 HOH HOH . D 4 HOH A 97 397 112 HOH HOH . D 4 HOH A 98 398 26 HOH HOH . D 4 HOH A 99 399 136 HOH HOH . D 4 HOH A 100 400 67 HOH HOH . D 4 HOH A 101 401 102 HOH HOH . D 4 HOH A 102 402 64 HOH HOH . D 4 HOH A 103 403 33 HOH HOH . D 4 HOH A 104 404 21 HOH HOH . D 4 HOH A 105 405 12 HOH HOH . D 4 HOH A 106 406 36 HOH HOH . D 4 HOH A 107 407 63 HOH HOH . D 4 HOH A 108 408 42 HOH HOH . D 4 HOH A 109 409 73 HOH HOH . D 4 HOH A 110 410 27 HOH HOH . D 4 HOH A 111 411 84 HOH HOH . D 4 HOH A 112 412 71 HOH HOH . D 4 HOH A 113 413 85 HOH HOH . D 4 HOH A 114 414 53 HOH HOH . D 4 HOH A 115 415 95 HOH HOH . D 4 HOH A 116 416 131 HOH HOH . D 4 HOH A 117 417 105 HOH HOH . D 4 HOH A 118 418 147 HOH HOH . D 4 HOH A 119 419 114 HOH HOH . D 4 HOH A 120 420 90 HOH HOH . D 4 HOH A 121 421 7 HOH HOH . D 4 HOH A 122 422 40 HOH HOH . D 4 HOH A 123 423 98 HOH HOH . D 4 HOH A 124 424 109 HOH HOH . D 4 HOH A 125 425 97 HOH HOH . D 4 HOH A 126 426 111 HOH HOH . D 4 HOH A 127 427 82 HOH HOH . D 4 HOH A 128 428 56 HOH HOH . D 4 HOH A 129 429 50 HOH HOH . D 4 HOH A 130 430 110 HOH HOH . D 4 HOH A 131 431 132 HOH HOH . D 4 HOH A 132 432 23 HOH HOH . D 4 HOH A 133 433 62 HOH HOH . D 4 HOH A 134 434 118 HOH HOH . D 4 HOH A 135 435 121 HOH HOH . D 4 HOH A 136 436 120 HOH HOH . D 4 HOH A 137 437 93 HOH HOH . D 4 HOH A 138 438 141 HOH HOH . D 4 HOH A 139 439 115 HOH HOH . D 4 HOH A 140 440 65 HOH HOH . D 4 HOH A 141 441 124 HOH HOH . D 4 HOH A 142 442 135 HOH HOH . D 4 HOH A 143 443 46 HOH HOH . D 4 HOH A 144 444 113 HOH HOH . D 4 HOH A 145 445 116 HOH HOH . D 4 HOH A 146 446 144 HOH HOH . D 4 HOH A 147 447 122 HOH HOH . D 4 HOH A 148 448 126 HOH HOH . D 4 HOH A 149 449 123 HOH HOH . D 4 HOH A 150 450 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 XKI . . . C 3 -7.499 -13.255 15.403 1 14.16 ? C15 XKI 202 A 1 HETATM 2 C C8 XKI . . . C 3 -2.09 -13.353 18.566 1 14.94 ? C8 XKI 202 A 1 HETATM 3 C C9 XKI . . . C 3 -2.624 -13.231 19.834 1 16.22 ? C9 XKI 202 A 1 HETATM 4 C C14 XKI . . . C 3 -6.572 -12.793 16.516 1 15.28 ? C14 XKI 202 A 1 HETATM 5 C C13 XKI . . . C 3 -5.232 -13.471 16.427 1 14.41 ? C13 XKI 202 A 1 HETATM 6 C C12 XKI . . . C 3 -4.326 -13.37 17.629 1 14.23 ? C12 XKI 202 A 1 HETATM 7 C C11 XKI . . . C 3 -4.825 -13.264 18.923 1 15.28 ? C11 XKI 202 A 1 HETATM 8 C C10 XKI . . . C 3 -3.983 -13.182 20.015 1 16.37 ? C10 XKI 202 A 1 HETATM 9 C C5 XKI . . . C 3 -0.86 -13.564 14.463 1 11.25 ? C5 XKI 202 A 1 HETATM 10 C C3 XKI . . . C 3 -0.653 -9.973 13.783 1 9.11 ? C3 XKI 202 A 1 HETATM 11 C C4 XKI . . . C 3 -1.284 -12.282 13.784 1 9.65 ? C4 XKI 202 A 1 HETATM 12 N N2 XKI . . . C 3 -0.485 -8.24 12.125 1 9.21 ? N2 XKI 202 A 1 HETATM 13 C C1 XKI . . . C 3 -1.111 -7.427 12.987 1 9.41 ? C1 XKI 202 A 1 HETATM 14 C C21 XKI . . . C 3 -2.806 -9.96 18.507 1 12.16 ? C21 XKI 202 A 1 HETATM 15 C C20 XKI . . . C 3 -1.489 -9.587 18.366 1 11.88 ? C20 XKI 202 A 1 HETATM 16 C C19 XKI . . . C 3 0.477 -8.958 16.96 1 10.71 ? C19 XKI 202 A 1 HETATM 17 C C18 XKI . . . C 3 -0.967 -9.318 17.102 1 10.06 ? C18 XKI 202 A 1 HETATM 18 C C22 XKI . . . C 3 -3.612 -10.083 17.401 1 11.32 ? C22 XKI 202 A 1 HETATM 19 C C16 XKI . . . C 3 -1.29 -9.094 14.616 1 9.36 ? C16 XKI 202 A 1 HETATM 20 C C17 XKI . . . C 3 -1.79 -9.424 15.978 1 10.01 ? C17 XKI 202 A 1 HETATM 21 C C2 XKI . . . C 3 -0.255 -9.493 12.517 1 8.97 ? C2 XKI 202 A 1 HETATM 22 C C23 XKI . . . C 3 -3.111 -9.815 16.149 1 10.79 ? C23 XKI 202 A 1 HETATM 23 C C6 XKI . . . C 3 -1.066 -13.505 15.952 1 11.88 ? C6 XKI 202 A 1 HETATM 24 C C7 XKI . . . C 3 -2.934 -13.414 17.472 1 13.15 ? C7 XKI 202 A 1 HETATM 25 F F1 XKI . . . C 3 1.033 -8.582 18.098 1 12.36 ? F1 XKI 202 A 1 HETATM 26 F F2 XKI . . . C 3 1.186 -10.012 16.51 1 11.26 ? F2 XKI 202 A 1 HETATM 27 F F3 XKI . . . C 3 0.684 -7.975 16.092 1 11.44 ? F3 XKI 202 A 1 HETATM 28 N N1 XKI . . . C 3 -1.354 -6.157 12.624 1 10.06 ? N1 XKI 202 A 1 HETATM 29 N N3 XKI . . . C 3 0.386 -10.295 11.64 1 8.91 ? N3 XKI 202 A 1 HETATM 30 N N4 XKI . . . C 3 -1.506 -7.813 14.213 1 9.5 ? N4 XKI 202 A 1 HETATM 31 O O1 XKI . . . C 3 -0.364 -11.251 14.18 1 9.56 ? O1 XKI 202 A 1 HETATM 32 O O2 XKI . . . C 3 -2.48 -13.523 16.186 1 12.09 ? O2 XKI 202 A 1 HETATM 33 O O3 XKI . . . C 3 -7.454 -12.65 14.323 1 14.01 -1 O3 XKI 202 A 1 HETATM 34 O O4 XKI . . . C 3 -8.233 -14.238 15.62 1 15.01 ? O4 XKI 202 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #