data_8F88 # _model_server_result.job_id 3yDXny_CmxWq8-V4iwMrcQ _model_server_result.datetime_utc '2024-11-16 10:49:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f88 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 8F88 # _exptl.entry_id 8F88 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.29 _cell.angle_gamma 90 _cell.entry_id 8F88 _cell.length_a 88.229 _cell.length_b 176.231 _cell.length_c 43.797 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G,H,J 1 1 B,E,K 2 1 C,F,I,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D C TYR 8 E TYR 1162 1_555 D N PTR 9 E PTR 1163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 D C PTR 9 E PTR 1163 1_555 D N LYS 10 E LYS 1164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 E C TYR 8 F TYR 1162 1_555 E N PTR 9 F PTR 1163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 E C PTR 9 F PTR 1163 1_555 E N LYS 10 F LYS 1164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 F C TYR 8 G TYR 1162 1_555 F N PTR 9 G PTR 1163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 363 n n C C2 TRS sing 364 n n C C3 TRS sing 365 n n C N TRS sing 366 n n C1 O1 TRS sing 367 n n C1 H11 TRS sing 368 n n C1 H12 TRS sing 369 n n C2 O2 TRS sing 370 n n C2 H21 TRS sing 371 n n C2 H22 TRS sing 372 n n C3 O3 TRS sing 373 n n C3 H31 TRS sing 374 n n C3 H32 TRS sing 375 n n N HN1 TRS sing 376 n n N HN2 TRS sing 377 n n N HN3 TRS sing 378 n n O1 HO1 TRS sing 379 n n O2 HO2 TRS sing 380 n n O3 HO3 TRS sing 381 n n # _atom_sites.entry_id 8F88 _atom_sites.fract_transf_matrix[1][1] 0.011334 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000057 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005674 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022833 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 TRS A 1 401 2 TRS TRS . H 3 TRS A 1 402 3 TRS TRS . I 3 TRS C 1 401 1 TRS TRS . J 4 HOH A 1 501 40 HOH HOH . J 4 HOH A 2 502 8 HOH HOH . J 4 HOH A 3 503 5 HOH HOH . J 4 HOH A 4 504 27 HOH HOH . J 4 HOH A 5 505 1 HOH HOH . J 4 HOH A 6 506 26 HOH HOH . J 4 HOH A 7 507 3 HOH HOH . J 4 HOH A 8 508 25 HOH HOH . J 4 HOH A 9 509 9 HOH HOH . J 4 HOH A 10 510 4 HOH HOH . J 4 HOH A 11 511 2 HOH HOH . K 4 HOH B 1 401 15 HOH HOH . K 4 HOH B 2 402 34 HOH HOH . K 4 HOH B 3 403 20 HOH HOH . K 4 HOH B 4 404 19 HOH HOH . K 4 HOH B 5 405 13 HOH HOH . K 4 HOH B 6 406 11 HOH HOH . K 4 HOH B 7 407 12 HOH HOH . K 4 HOH B 8 408 17 HOH HOH . K 4 HOH B 9 409 14 HOH HOH . K 4 HOH B 10 410 21 HOH HOH . K 4 HOH B 11 411 10 HOH HOH . K 4 HOH B 12 412 28 HOH HOH . K 4 HOH B 13 413 22 HOH HOH . K 4 HOH B 14 414 31 HOH HOH . K 4 HOH B 15 415 29 HOH HOH . K 4 HOH B 16 416 30 HOH HOH . L 4 HOH C 1 501 41 HOH HOH . L 4 HOH C 2 502 38 HOH HOH . L 4 HOH C 3 503 36 HOH HOH . L 4 HOH C 4 504 39 HOH HOH . L 4 HOH C 5 505 45 HOH HOH . L 4 HOH C 6 506 42 HOH HOH . L 4 HOH C 7 507 46 HOH HOH . L 4 HOH C 8 508 23 HOH HOH . L 4 HOH C 9 509 43 HOH HOH . L 4 HOH C 10 510 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . H 3 43.667 -34.327 4.494 1 83.33 ? C TRS 402 A 1 HETATM 2 C C1 TRS . . . H 3 42.612 -33.179 4.596 1 78.22 ? C1 TRS 402 A 1 HETATM 3 C C2 TRS . . . H 3 43.109 -35.026 3.178 1 80.23 ? C2 TRS 402 A 1 HETATM 4 C C3 TRS . . . H 3 43.17 -35.257 5.659 1 88.99 ? C3 TRS 402 A 1 HETATM 5 N N TRS . . . H 3 45.175 -33.681 4.657 1 80.11 ? N TRS 402 A 1 HETATM 6 O O1 TRS . . . H 3 41.282 -33.702 4.77 1 66.89 ? O1 TRS 402 A 1 HETATM 7 O O2 TRS . . . H 3 41.671 -34.775 3.018 1 73.51 ? O2 TRS 402 A 1 HETATM 8 O O3 TRS . . . H 3 42.254 -34.561 6.52 1 88.51 ? O3 TRS 402 A 1 HETATM 9 H H11 TRS . . . H 3 42.647 -32.575 3.689 1 93.54 ? H11 TRS 402 A 1 HETATM 10 H H12 TRS . . . H 3 42.86 -32.534 5.438 1 93.54 ? H12 TRS 402 A 1 HETATM 11 H H21 TRS . . . H 3 43.286 -36.1 3.234 1 95.96 ? H21 TRS 402 A 1 HETATM 12 H H22 TRS . . . H 3 43.643 -34.643 2.309 1 95.96 ? H22 TRS 402 A 1 HETATM 13 H H31 TRS . . . H 3 42.678 -36.135 5.239 1 106.47 ? H31 TRS 402 A 1 HETATM 14 H H32 TRS . . . H 3 44.026 -35.6 6.241 1 106.47 ? H32 TRS 402 A 1 HETATM 15 H HN1 TRS . . . H 3 45.498 -33.368 5.567 1 95.81 ? HN1 TRS 402 A 1 HETATM 16 H HN2 TRS . . . H 3 45.428 -32.846 4.138 1 95.81 ? HN2 TRS 402 A 1 HETATM 17 H HN3 TRS . . . H 3 45.992 -34.232 4.415 1 95.81 ? HN3 TRS 402 A 1 HETATM 18 H HO1 TRS . . . H 3 40.63 -32.979 4.657 1 79.95 ? HO1 TRS 402 A 1 HETATM 19 H HO2 TRS . . . H 3 41.349 -35.222 2.208 1 87.89 ? HO2 TRS 402 A 1 HETATM 20 H HO3 TRS . . . H 3 42.055 -35.117 7.302 1 105.89 ? HO3 TRS 402 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #