data_8F91 # _model_server_result.job_id 49U_F0cLGmtnlZP6iIaoHg _model_server_result.datetime_utc '2024-11-15 08:24:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f91 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8F91 # _exptl.entry_id 8F91 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8F91 _cell.length_a 179.05 _cell.length_b 179.05 _cell.length_c 179.05 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F91 _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall 'I 4 2 3' _symmetry.space_group_name_H-M 'I 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 190 A LEU 169 1_555 A N SMC 191 A SMC 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C SMC 191 A SMC 170 1_555 A N HIS 192 A HIS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A SG CYS 368 A CYS 347 1_555 B FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 8F91 _atom_sites.fract_transf_matrix[1][1] 0.005585 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005585 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005585 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 401 401 HEM HEM . C 3 HOH A 1 501 4 HOH HOH . C 3 HOH A 2 502 8 HOH HOH . C 3 HOH A 3 503 13 HOH HOH . C 3 HOH A 4 504 2 HOH HOH . C 3 HOH A 5 505 6 HOH HOH . C 3 HOH A 6 506 5 HOH HOH . C 3 HOH A 7 507 11 HOH HOH . C 3 HOH A 8 508 1 HOH HOH . C 3 HOH A 9 509 10 HOH HOH . C 3 HOH A 10 510 12 HOH HOH . C 3 HOH A 11 511 7 HOH HOH . C 3 HOH A 12 512 19 HOH HOH . C 3 HOH A 13 513 15 HOH HOH . C 3 HOH A 14 514 21 HOH HOH . C 3 HOH A 15 515 16 HOH HOH . C 3 HOH A 16 516 17 HOH HOH . C 3 HOH A 17 517 20 HOH HOH . C 3 HOH A 18 518 14 HOH HOH . C 3 HOH A 19 519 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -52.633 14.777 -22.389 1 59.16 ? CHA HEM 401 A 1 HETATM 2 C CHB HEM . . . B 2 -56.663 16.892 -23.952 1 40.1 ? CHB HEM 401 A 1 HETATM 3 C CHC HEM . . . B 2 -58.459 12.54 -25.116 1 60.06 ? CHC HEM 401 A 1 HETATM 4 C CHD HEM . . . B 2 -54.402 10.478 -23.633 1 47.82 ? CHD HEM 401 A 1 HETATM 5 C C1A HEM . . . B 2 -53.582 15.702 -22.722 1 46.46 ? C1A HEM 401 A 1 HETATM 6 C C2A HEM . . . B 2 -53.406 17.086 -22.592 1 40.69 ? C2A HEM 401 A 1 HETATM 7 C C3A HEM . . . B 2 -54.532 17.682 -23.034 1 54.63 ? C3A HEM 401 A 1 HETATM 8 C C4A HEM . . . B 2 -55.415 16.671 -23.434 1 49.8 ? C4A HEM 401 A 1 HETATM 9 C CMA HEM . . . B 2 -54.809 19.16 -23.086 1 40.87 ? CMA HEM 401 A 1 HETATM 10 C CAA HEM . . . B 2 -52.176 17.777 -22.08 1 28.52 ? CAA HEM 401 A 1 HETATM 11 C CBA HEM . . . B 2 -52.212 17.911 -20.567 1 51.13 ? CBA HEM 401 A 1 HETATM 12 C CGA HEM . . . B 2 -51.02 18.72 -20.152 1 46.09 ? CGA HEM 401 A 1 HETATM 13 O O1A HEM . . . B 2 -51.129 19.56 -19.253 1 48.38 ? O1A HEM 401 A 1 HETATM 14 O O2A HEM . . . B 2 -49.922 18.569 -20.71 1 40.33 ? O2A HEM 401 A 1 HETATM 15 C C1B HEM . . . B 2 -57.495 15.863 -24.396 1 58.66 ? C1B HEM 401 A 1 HETATM 16 C C2B HEM . . . B 2 -58.811 16.101 -24.88 1 55.09 ? C2B HEM 401 A 1 HETATM 17 C C3B HEM . . . B 2 -59.342 14.883 -25.209 1 55.55 ? C3B HEM 401 A 1 HETATM 18 C C4B HEM . . . B 2 -58.28 13.901 -24.906 1 61.64 ? C4B HEM 401 A 1 HETATM 19 C CMB HEM . . . B 2 -59.484 17.446 -25.002 1 49.8 ? CMB HEM 401 A 1 HETATM 20 C CAB HEM . . . B 2 -60.665 14.498 -25.765 1 63.32 ? CAB HEM 401 A 1 HETATM 21 C CBB HEM . . . B 2 -61.65 15.323 -26.09 1 86.45 ? CBB HEM 401 A 1 HETATM 22 C C1C HEM . . . B 2 -57.516 11.587 -24.814 1 50.12 ? C1C HEM 401 A 1 HETATM 23 C C2C HEM . . . B 2 -57.687 10.207 -24.969 1 55.95 ? C2C HEM 401 A 1 HETATM 24 C C3C HEM . . . B 2 -56.517 9.6 -24.543 1 55.13 ? C3C HEM 401 A 1 HETATM 25 C C4C HEM . . . B 2 -55.656 10.656 -24.132 1 49.07 ? C4C HEM 401 A 1 HETATM 26 C CMC HEM . . . B 2 -58.929 9.55 -25.511 1 49.93 ? CMC HEM 401 A 1 HETATM 27 C CAC HEM . . . B 2 -56.149 8.162 -24.472 1 57.12 ? CAC HEM 401 A 1 HETATM 28 C CBC HEM . . . B 2 -56.926 7.118 -24.748 1 59.56 ? CBC HEM 401 A 1 HETATM 29 C C1D HEM . . . B 2 -53.617 11.517 -23.171 1 51.35 ? C1D HEM 401 A 1 HETATM 30 C C2D HEM . . . B 2 -52.308 11.249 -22.578 1 53.36 ? C2D HEM 401 A 1 HETATM 31 C C3D HEM . . . B 2 -51.814 12.441 -22.239 1 43.61 ? C3D HEM 401 A 1 HETATM 32 C C4D HEM . . . B 2 -52.824 13.43 -22.615 1 52.31 ? C4D HEM 401 A 1 HETATM 33 C CMD HEM . . . B 2 -51.635 9.913 -22.392 1 38.61 ? CMD HEM 401 A 1 HETATM 34 C CAD HEM . . . B 2 -50.493 12.688 -21.579 1 26.08 ? CAD HEM 401 A 1 HETATM 35 C CBD HEM . . . B 2 -49.405 12.872 -22.619 1 47.43 ? CBD HEM 401 A 1 HETATM 36 C CGD HEM . . . B 2 -48.128 13.269 -21.933 1 61.08 ? CGD HEM 401 A 1 HETATM 37 O O1D HEM . . . B 2 -48.001 13.158 -20.7 1 49.19 ? O1D HEM 401 A 1 HETATM 38 O O2D HEM . . . B 2 -47.179 13.712 -22.601 1 62.48 ? O2D HEM 401 A 1 HETATM 39 N NA HEM . . . B 2 -54.82 15.463 -23.246 1 40.45 ? NA HEM 401 A 1 HETATM 40 N NB HEM . . . B 2 -57.214 14.556 -24.432 1 62.7 ? NB HEM 401 A 1 HETATM 41 N NC HEM . . . B 2 -56.285 11.848 -24.313 1 55.86 ? NC HEM 401 A 1 HETATM 42 N ND HEM . . . B 2 -53.878 12.827 -23.173 1 59.79 ? ND HEM 401 A 1 HETATM 43 FE FE HEM . . . B 2 -55.41 13.671 -23.809 1 47 ? FE HEM 401 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #