data_8F93
#
_model_server_result.job_id            LXPQ9GWJZ3Fp01OA3xv5lg 
_model_server_result.datetime_utc      '2024-10-19 12:41:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8f93 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    8F93 
#
_exptl.entry_id    8F93 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.545 
_cell.angle_gamma         90 
_cell.entry_id            8F93 
_cell.length_a            92.78 
_cell.length_b            103.022 
_cell.length_c            81.014 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8F93 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OH TYR 210 A TYR 228 1_555 C S1 XKN . A XKN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.596 ? 
covale ? covale2 B OH TYR 210 B TYR 228 1_555 G S1 XKN . B XKN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.587 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8F93 
_atom_sites.fract_transf_matrix[1][1]    0.010778 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002202 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009707 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012598 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 XKN A 1 401 401 XKN 2RS . 
D 3 GOL A 1 402 402 GOL GOL . 
E 4 SO4 A 1 403 1 SO4 SO4 . 
F 5 CL A 1 404 2 CL CL . 
G 2 XKN B 1 401 402 XKN 2RS . 
H 3 GOL B 1 402 404 GOL GOL . 
I 3 GOL B 1 403 406 GOL GOL . 
J 3 GOL B 1 404 407 GOL GOL . 
K 4 SO4 B 1 405 2 SO4 SO4 . 
L 5 CL B 1 406 1 CL CL . 
M 6 HOH A 1 501 35 HOH HOH . 
M 6 HOH A 2 502 3 HOH HOH . 
M 6 HOH A 3 503 10 HOH HOH . 
M 6 HOH A 4 504 52 HOH HOH . 
M 6 HOH A 5 505 18 HOH HOH . 
M 6 HOH A 6 506 45 HOH HOH . 
M 6 HOH A 7 507 96 HOH HOH . 
M 6 HOH A 8 508 1 HOH HOH . 
M 6 HOH A 9 509 64 HOH HOH . 
M 6 HOH A 10 510 92 HOH HOH . 
M 6 HOH A 11 511 28 HOH HOH . 
M 6 HOH A 12 512 72 HOH HOH . 
M 6 HOH A 13 513 25 HOH HOH . 
M 6 HOH A 14 514 95 HOH HOH . 
M 6 HOH A 15 515 32 HOH HOH . 
M 6 HOH A 16 516 73 HOH HOH . 
M 6 HOH A 17 517 87 HOH HOH . 
M 6 HOH A 18 518 97 HOH HOH . 
M 6 HOH A 19 519 75 HOH HOH . 
M 6 HOH A 20 520 53 HOH HOH . 
M 6 HOH A 21 521 48 HOH HOH . 
M 6 HOH A 22 522 34 HOH HOH . 
M 6 HOH A 23 523 12 HOH HOH . 
M 6 HOH A 24 524 44 HOH HOH . 
M 6 HOH A 25 525 19 HOH HOH . 
M 6 HOH A 26 526 47 HOH HOH . 
M 6 HOH A 27 527 14 HOH HOH . 
M 6 HOH A 28 528 23 HOH HOH . 
M 6 HOH A 29 529 24 HOH HOH . 
M 6 HOH A 30 530 30 HOH HOH . 
M 6 HOH A 31 531 17 HOH HOH . 
M 6 HOH A 32 532 67 HOH HOH . 
M 6 HOH A 33 533 33 HOH HOH . 
M 6 HOH A 34 534 50 HOH HOH . 
M 6 HOH A 35 535 89 HOH HOH . 
M 6 HOH A 36 536 22 HOH HOH . 
M 6 HOH A 37 537 71 HOH HOH . 
M 6 HOH A 38 538 31 HOH HOH . 
M 6 HOH A 39 539 29 HOH HOH . 
M 6 HOH A 40 540 74 HOH HOH . 
M 6 HOH A 41 541 90 HOH HOH . 
M 6 HOH A 42 542 9 HOH HOH . 
M 6 HOH A 43 543 78 HOH HOH . 
M 6 HOH A 44 544 46 HOH HOH . 
M 6 HOH A 45 545 21 HOH HOH . 
M 6 HOH A 46 546 26 HOH HOH . 
M 6 HOH A 47 547 16 HOH HOH . 
M 6 HOH A 48 548 84 HOH HOH . 
M 6 HOH A 49 549 7 HOH HOH . 
M 6 HOH A 50 550 70 HOH HOH . 
M 6 HOH A 51 551 58 HOH HOH . 
M 6 HOH A 52 552 94 HOH HOH . 
M 6 HOH A 53 553 40 HOH HOH . 
M 6 HOH A 54 554 55 HOH HOH . 
M 6 HOH A 55 555 20 HOH HOH . 
M 6 HOH A 56 556 88 HOH HOH . 
M 6 HOH A 57 557 63 HOH HOH . 
M 6 HOH A 58 558 69 HOH HOH . 
M 6 HOH A 59 559 59 HOH HOH . 
M 6 HOH A 60 560 93 HOH HOH . 
M 6 HOH A 61 561 66 HOH HOH . 
M 6 HOH A 62 562 61 HOH HOH . 
M 6 HOH A 63 563 81 HOH HOH . 
M 6 HOH A 64 564 82 HOH HOH . 
N 6 HOH B 1 501 42 HOH HOH . 
N 6 HOH B 2 502 49 HOH HOH . 
N 6 HOH B 3 503 15 HOH HOH . 
N 6 HOH B 4 504 8 HOH HOH . 
N 6 HOH B 5 505 27 HOH HOH . 
N 6 HOH B 6 506 41 HOH HOH . 
N 6 HOH B 7 507 5 HOH HOH . 
N 6 HOH B 8 508 79 HOH HOH . 
N 6 HOH B 9 509 60 HOH HOH . 
N 6 HOH B 10 510 56 HOH HOH . 
N 6 HOH B 11 511 85 HOH HOH . 
N 6 HOH B 12 512 68 HOH HOH . 
N 6 HOH B 13 513 4 HOH HOH . 
N 6 HOH B 14 514 62 HOH HOH . 
N 6 HOH B 15 515 91 HOH HOH . 
N 6 HOH B 16 516 11 HOH HOH . 
N 6 HOH B 17 517 54 HOH HOH . 
N 6 HOH B 18 518 2 HOH HOH . 
N 6 HOH B 19 519 51 HOH HOH . 
N 6 HOH B 20 520 38 HOH HOH . 
N 6 HOH B 21 521 65 HOH HOH . 
N 6 HOH B 22 522 13 HOH HOH . 
N 6 HOH B 23 523 76 HOH HOH . 
N 6 HOH B 24 524 6 HOH HOH . 
N 6 HOH B 25 525 83 HOH HOH . 
N 6 HOH B 26 526 57 HOH HOH . 
N 6 HOH B 27 527 39 HOH HOH . 
N 6 HOH B 28 528 80 HOH HOH . 
N 6 HOH B 29 529 37 HOH HOH . 
N 6 HOH B 30 530 36 HOH HOH . 
N 6 HOH B 31 531 43 HOH HOH . 
N 6 HOH B 32 532 86 HOH HOH . 
N 6 HOH B 33 533 77 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 9.469 27.163 10.615 1 66.47 ? C1 GOL 402 A 1 
HETATM 2 O O1 GOL . . . D 3 9.244 26.22 9.596 1 72.33 ? O1 GOL 402 A 1 
HETATM 3 C C2 GOL . . . D 3 10.233 26.355 11.752 1 77.96 ? C2 GOL 402 A 1 
HETATM 4 O O2 GOL . . . D 3 11.153 25.442 11.25 1 68.06 ? O2 GOL 402 A 1 
HETATM 5 C C3 GOL . . . D 3 10.824 27.531 12.563 1 76.95 ? C3 GOL 402 A 1 
HETATM 6 O O3 GOL . . . D 3 9.878 27.851 13.581 1 79.64 ? O3 GOL 402 A 1 
HETATM 7 H H11 GOL . . . D 3 8.65 27.542 10.971 1 79.76 ? H11 GOL 402 A 1 
HETATM 8 H H12 GOL . . . D 3 10.006 27.917 10.325 1 79.76 ? H12 GOL 402 A 1 
HETATM 9 H HO1 GOL . . . D 3 8.774 26.602 8.994 1 86.8 ? HO1 GOL 402 A 1 
HETATM 10 H H2 GOL . . . D 3 9.665 25.781 12.289 1 93.55 ? H2 GOL 402 A 1 
HETATM 11 H HO2 GOL . . . D 3 11.727 25.297 11.859 1 81.67 ? HO2 GOL 402 A 1 
HETATM 12 H H31 GOL . . . D 3 11.005 28.269 11.96 1 92.34 ? H31 GOL 402 A 1 
HETATM 13 H H32 GOL . . . D 3 11.69 27.268 12.912 1 92.34 ? H32 GOL 402 A 1 
HETATM 14 H HO3 GOL . . . D 3 10.215 28.485 14.061 1 95.57 ? HO3 GOL 402 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#