data_8F9H # _model_server_result.job_id JDcpPpVey2APmr1y13OiIA _model_server_result.datetime_utc '2024-11-16 11:02:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f9h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 8F9H # _exptl.entry_id 8F9H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.89 _cell.angle_gamma 90 _cell.entry_id 8F9H _cell.length_a 34.856 _cell.length_b 29.027 _cell.length_c 64.263 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F9H _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 B FE HEM . A HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc2 B FE HEM . A HEM 200 1_555 C O1 NSM . A NSM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc3 B FE HEM . A HEM 200 1_555 C N NSM . A NSM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 8F9H _atom_sites.fract_transf_matrix[1][1] 0.028689 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00817 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034451 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 200 200 HEM HEM . C 3 NSM A 1 201 201 NSM NSM . D 4 SO4 A 1 202 202 SO4 SO4 . E 5 HOH A 1 301 301 HOH HOH . E 5 HOH A 2 302 302 HOH HOH . E 5 HOH A 3 303 303 HOH HOH . E 5 HOH A 4 304 304 HOH HOH . E 5 HOH A 5 305 305 HOH HOH . E 5 HOH A 6 306 306 HOH HOH . E 5 HOH A 7 307 307 HOH HOH . E 5 HOH A 8 308 308 HOH HOH . E 5 HOH A 9 309 309 HOH HOH . E 5 HOH A 10 310 310 HOH HOH . E 5 HOH A 11 311 311 HOH HOH . E 5 HOH A 12 312 312 HOH HOH . E 5 HOH A 13 313 313 HOH HOH . E 5 HOH A 14 314 314 HOH HOH . E 5 HOH A 15 315 315 HOH HOH . E 5 HOH A 16 316 316 HOH HOH . E 5 HOH A 17 317 317 HOH HOH . E 5 HOH A 18 318 318 HOH HOH . E 5 HOH A 19 319 319 HOH HOH . E 5 HOH A 20 320 320 HOH HOH . E 5 HOH A 21 321 321 HOH HOH . E 5 HOH A 22 322 322 HOH HOH . E 5 HOH A 23 323 324 HOH HOH . E 5 HOH A 24 324 323 HOH HOH . E 5 HOH A 25 325 325 HOH HOH . E 5 HOH A 26 326 326 HOH HOH . E 5 HOH A 27 327 327 HOH HOH . E 5 HOH A 28 328 328 HOH HOH . E 5 HOH A 29 329 329 HOH HOH . E 5 HOH A 30 330 330 HOH HOH . E 5 HOH A 31 331 331 HOH HOH . E 5 HOH A 32 332 332 HOH HOH . E 5 HOH A 33 333 333 HOH HOH . E 5 HOH A 34 334 334 HOH HOH . E 5 HOH A 35 335 335 HOH HOH . E 5 HOH A 36 336 336 HOH HOH . E 5 HOH A 37 337 337 HOH HOH . E 5 HOH A 38 338 338 HOH HOH . E 5 HOH A 39 339 339 HOH HOH . E 5 HOH A 40 340 340 HOH HOH . E 5 HOH A 41 341 341 HOH HOH . E 5 HOH A 42 342 342 HOH HOH . E 5 HOH A 43 343 343 HOH HOH . E 5 HOH A 44 344 344 HOH HOH . E 5 HOH A 45 345 345 HOH HOH . E 5 HOH A 46 346 346 HOH HOH . E 5 HOH A 47 347 347 HOH HOH . E 5 HOH A 48 348 348 HOH HOH . E 5 HOH A 49 349 349 HOH HOH . E 5 HOH A 50 350 350 HOH HOH . E 5 HOH A 51 351 351 HOH HOH . E 5 HOH A 52 352 352 HOH HOH . E 5 HOH A 53 353 353 HOH HOH . E 5 HOH A 54 354 354 HOH HOH . E 5 HOH A 55 355 355 HOH HOH . E 5 HOH A 56 356 356 HOH HOH . E 5 HOH A 57 357 357 HOH HOH . E 5 HOH A 58 358 358 HOH HOH . E 5 HOH A 59 359 359 HOH HOH . E 5 HOH A 60 360 360 HOH HOH . E 5 HOH A 61 361 361 HOH HOH . E 5 HOH A 62 362 362 HOH HOH . E 5 HOH A 63 363 363 HOH HOH . E 5 HOH A 64 364 364 HOH HOH . E 5 HOH A 65 365 365 HOH HOH . E 5 HOH A 66 366 366 HOH HOH . E 5 HOH A 67 367 367 HOH HOH . E 5 HOH A 68 368 368 HOH HOH . E 5 HOH A 69 369 369 HOH HOH . E 5 HOH A 70 370 370 HOH HOH . E 5 HOH A 71 371 371 HOH HOH . E 5 HOH A 72 372 372 HOH HOH . E 5 HOH A 73 373 373 HOH HOH . E 5 HOH A 74 374 374 HOH HOH . E 5 HOH A 75 375 375 HOH HOH . E 5 HOH A 76 376 376 HOH HOH . E 5 HOH A 77 377 377 HOH HOH . E 5 HOH A 78 378 378 HOH HOH . E 5 HOH A 79 379 379 HOH HOH . E 5 HOH A 80 380 380 HOH HOH . E 5 HOH A 81 381 381 HOH HOH . E 5 HOH A 82 382 382 HOH HOH . E 5 HOH A 83 383 383 HOH HOH . E 5 HOH A 84 384 384 HOH HOH . E 5 HOH A 85 385 385 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -70.785 -16.841 140.461 1 12.34 ? CHA HEM 200 A 1 HETATM 2 C CHB HEM . . . B 2 -74.316 -19.957 139.242 1 12.28 ? CHB HEM 200 A 1 HETATM 3 C CHC HEM . . . B 2 -70.989 -23.119 137.745 1 13.3 ? CHC HEM 200 A 1 HETATM 4 C CHD HEM . . . B 2 -67.531 -20.126 139.038 1 13.68 ? CHD HEM 200 A 1 HETATM 5 C C1A HEM . . . B 2 -72.028 -17.408 140.23 1 12.53 ? C1A HEM 200 A 1 HETATM 6 C C2A HEM . . . B 2 -73.285 -16.764 140.465 1 12.2 ? C2A HEM 200 A 1 HETATM 7 C C3A HEM . . . B 2 -74.268 -17.648 140.197 1 13.51 ? C3A HEM 200 A 1 HETATM 8 C C4A HEM . . . B 2 -73.652 -18.841 139.704 1 12.07 ? C4A HEM 200 A 1 HETATM 9 C CMA HEM . . . B 2 -75.775 -17.355 140.33 1 12.25 ? CMA HEM 200 A 1 HETATM 10 C CAA HEM . . . B 2 -73.416 -15.354 140.966 1 13.69 ? CAA HEM 200 A 1 HETATM 11 C CBA HEM . . . B 2 -73.84 -14.471 139.809 1 15.4 ? CBA HEM 200 A 1 HETATM 12 C CGA HEM . . . B 2 -72.914 -14.421 138.618 1 17.06 ? CGA HEM 200 A 1 HETATM 13 O O1A HEM . . . B 2 -73.363 -14.74 137.47 1 18.39 ? O1A HEM 200 A 1 HETATM 14 O O2A HEM . . . B 2 -71.734 -14.02 138.721 1 16.72 ? O2A HEM 200 A 1 HETATM 15 C C1B HEM . . . B 2 -73.721 -21.081 138.713 1 12.72 ? C1B HEM 200 A 1 HETATM 16 C C2B HEM . . . B 2 -74.434 -22.2 138.254 1 13.39 ? C2B HEM 200 A 1 HETATM 17 C C3B HEM . . . B 2 -73.508 -23.074 137.761 1 14.01 ? C3B HEM 200 A 1 HETATM 18 C C4B HEM . . . B 2 -72.193 -22.505 138.039 1 13.92 ? C4B HEM 200 A 1 HETATM 19 C CMB HEM . . . B 2 -75.953 -22.404 138.206 1 13.29 ? CMB HEM 200 A 1 HETATM 20 C CAB HEM . . . B 2 -73.696 -24.444 137.268 1 14.62 ? CAB HEM 200 A 1 HETATM 21 C CBB HEM . . . B 2 -74.679 -25.24 137.604 1 17.76 ? CBB HEM 200 A 1 HETATM 22 C C1C HEM . . . B 2 -69.741 -22.605 137.956 1 13.03 ? C1C HEM 200 A 1 HETATM 23 C C2C HEM . . . B 2 -68.565 -23.346 137.828 1 13.62 ? C2C HEM 200 A 1 HETATM 24 C C3C HEM . . . B 2 -67.548 -22.522 138.261 1 13.06 ? C3C HEM 200 A 1 HETATM 25 C C4C HEM . . . B 2 -68.162 -21.255 138.566 1 13.64 ? C4C HEM 200 A 1 HETATM 26 C CMC HEM . . . B 2 -68.5 -24.774 137.409 1 12.91 ? CMC HEM 200 A 1 HETATM 27 C CAC HEM . . . B 2 -66.069 -22.726 138.352 1 14.08 ? CAC HEM 200 A 1 HETATM 28 C CBC HEM . . . B 2 -65.455 -23.82 138.11 1 16.03 ? CBC HEM 200 A 1 HETATM 29 C C1D HEM . . . B 2 -68.176 -18.97 139.497 1 14.02 ? C1D HEM 200 A 1 HETATM 30 C C2D HEM . . . B 2 -67.42 -17.837 140.059 1 14.83 ? C2D HEM 200 A 1 HETATM 31 C C3D HEM . . . B 2 -68.307 -16.945 140.458 1 14 ? C3D HEM 200 A 1 HETATM 32 C C4D HEM . . . B 2 -69.613 -17.537 140.134 1 12.98 ? C4D HEM 200 A 1 HETATM 33 C CMD HEM . . . B 2 -65.919 -17.69 140.184 1 14.81 ? CMD HEM 200 A 1 HETATM 34 C CAD HEM . . . B 2 -68.067 -15.641 141.163 1 14.49 ? CAD HEM 200 A 1 HETATM 35 C CBD HEM . . . B 2 -68.016 -15.914 142.685 1 16.45 ? CBD HEM 200 A 1 HETATM 36 C CGD HEM . . . B 2 -67.703 -14.726 143.602 1 18.03 ? CGD HEM 200 A 1 HETATM 37 O O1D HEM . . . B 2 -66.532 -14.225 143.554 1 16.18 ? O1D HEM 200 A 1 HETATM 38 O O2D HEM . . . B 2 -68.575 -14.263 144.407 1 17.06 ? O2D HEM 200 A 1 HETATM 39 N NA HEM . . . B 2 -72.284 -18.679 139.733 1 12.37 ? NA HEM 200 A 1 HETATM 40 N NB HEM . . . B 2 -72.393 -21.311 138.578 1 13.32 ? NB HEM 200 A 1 HETATM 41 N NC HEM . . . B 2 -69.49 -21.394 138.437 1 12.85 ? NC HEM 200 A 1 HETATM 42 N ND HEM . . . B 2 -69.519 -18.767 139.57 1 11.94 ? ND HEM 200 A 1 HETATM 43 FE FE HEM . . . B 2 -70.905 -19.982 139.095 1 13.68 ? FE HEM 200 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #