data_8FAQ # _model_server_result.job_id cRU3r_hvDlc-4TEZJ5g0aQ _model_server_result.datetime_utc '2024-12-05 03:08:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8faq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 8FAQ # _exptl.entry_id 8FAQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8FAQ _cell.length_a 99.705 _cell.length_b 99.705 _cell.length_c 395.31 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FAQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -49.8525 -86.347063 0 3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 49.8525 -86.347063 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 610 NAG 2 n B NAG 2 B 2 NAG A 611 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 14 1_555 A SG CYS 456 A CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? disulf ? disulf2 A SG CYS 42 A CYS 52 1_555 A SG CYS 267 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? disulf ? disulf3 A SG CYS 54 A CYS 64 1_555 A SG CYS 66 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? disulf ? disulf4 A SG CYS 87 A CYS 97 1_555 A SG CYS 129 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? disulf ? disulf5 A SG CYS 271 A CYS 281 1_555 A SG CYS 295 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf6 A SG CYS 463 A CYS 473 1_555 A SG CYS 467 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? covale ? covale1 A ND2 ASN 28 A ASN 38 1_555 F C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale2 A ND2 ASN 53 A ASN 63 1_555 D C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale3 A ND2 ASN 155 A ASN 165 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 A ND2 ASN 236 A ASN 246 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? covale ? covale5 A ND2 ASN 275 A ASN 285 1_555 E C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale6 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8FAQ _atom_sites.fract_transf_matrix[1][1] 0.01003 _atom_sites.fract_transf_matrix[1][2] 0.005791 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011581 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00253 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 601 612 NAG NAG . D 3 NAG A 1 602 613 NAG NAG . E 3 NAG A 1 603 614 NAG NAG . F 3 NAG A 1 604 615 NAG NAG . G 4 HOH A 1 701 151 HOH HOH . G 4 HOH A 2 702 66 HOH HOH . G 4 HOH A 3 703 79 HOH HOH . G 4 HOH A 4 704 132 HOH HOH . G 4 HOH A 5 705 122 HOH HOH . G 4 HOH A 6 706 108 HOH HOH . G 4 HOH A 7 707 75 HOH HOH . G 4 HOH A 8 708 110 HOH HOH . G 4 HOH A 9 709 94 HOH HOH . G 4 HOH A 10 710 73 HOH HOH . G 4 HOH A 11 711 102 HOH HOH . G 4 HOH A 12 712 127 HOH HOH . G 4 HOH A 13 713 111 HOH HOH . G 4 HOH A 14 714 112 HOH HOH . G 4 HOH A 15 715 121 HOH HOH . G 4 HOH A 16 716 83 HOH HOH . G 4 HOH A 17 717 128 HOH HOH . G 4 HOH A 18 718 145 HOH HOH . G 4 HOH A 19 719 80 HOH HOH . G 4 HOH A 20 720 105 HOH HOH . G 4 HOH A 21 721 131 HOH HOH . G 4 HOH A 22 722 97 HOH HOH . G 4 HOH A 23 723 148 HOH HOH . G 4 HOH A 24 724 146 HOH HOH . G 4 HOH A 25 725 18 HOH HOH . G 4 HOH A 26 726 85 HOH HOH . G 4 HOH A 27 727 134 HOH HOH . G 4 HOH A 28 728 88 HOH HOH . G 4 HOH A 29 729 84 HOH HOH . G 4 HOH A 30 730 124 HOH HOH . G 4 HOH A 31 731 120 HOH HOH . G 4 HOH A 32 732 107 HOH HOH . G 4 HOH A 33 733 21 HOH HOH . G 4 HOH A 34 734 106 HOH HOH . G 4 HOH A 35 735 72 HOH HOH . G 4 HOH A 36 736 109 HOH HOH . G 4 HOH A 37 737 129 HOH HOH . G 4 HOH A 38 738 46 HOH HOH . G 4 HOH A 39 739 65 HOH HOH . G 4 HOH A 40 740 138 HOH HOH . G 4 HOH A 41 741 99 HOH HOH . G 4 HOH A 42 742 114 HOH HOH . G 4 HOH A 43 743 77 HOH HOH . G 4 HOH A 44 744 87 HOH HOH . G 4 HOH A 45 745 100 HOH HOH . G 4 HOH A 46 746 149 HOH HOH . G 4 HOH A 47 747 103 HOH HOH . G 4 HOH A 48 748 125 HOH HOH . G 4 HOH A 49 749 130 HOH HOH . G 4 HOH A 50 750 154 HOH HOH . G 4 HOH A 51 751 119 HOH HOH . G 4 HOH A 52 752 137 HOH HOH . G 4 HOH A 53 753 69 HOH HOH . G 4 HOH A 54 754 36 HOH HOH . G 4 HOH A 55 755 19 HOH HOH . G 4 HOH A 56 756 96 HOH HOH . G 4 HOH A 57 757 147 HOH HOH . G 4 HOH A 58 758 82 HOH HOH . G 4 HOH A 59 759 89 HOH HOH . G 4 HOH A 60 760 155 HOH HOH . G 4 HOH A 61 761 76 HOH HOH . G 4 HOH A 62 762 142 HOH HOH . G 4 HOH A 63 763 68 HOH HOH . G 4 HOH A 64 764 59 HOH HOH . G 4 HOH A 65 765 35 HOH HOH . G 4 HOH A 66 766 153 HOH HOH . G 4 HOH A 67 767 144 HOH HOH . G 4 HOH A 68 768 74 HOH HOH . G 4 HOH A 69 769 81 HOH HOH . G 4 HOH A 70 770 43 HOH HOH . G 4 HOH A 71 771 31 HOH HOH . G 4 HOH A 72 772 14 HOH HOH . G 4 HOH A 73 773 133 HOH HOH . G 4 HOH A 74 774 70 HOH HOH . G 4 HOH A 75 775 42 HOH HOH . G 4 HOH A 76 776 86 HOH HOH . G 4 HOH A 77 777 47 HOH HOH . G 4 HOH A 78 778 33 HOH HOH . G 4 HOH A 79 779 67 HOH HOH . G 4 HOH A 80 780 152 HOH HOH . G 4 HOH A 81 781 27 HOH HOH . G 4 HOH A 82 782 61 HOH HOH . G 4 HOH A 83 783 91 HOH HOH . G 4 HOH A 84 784 16 HOH HOH . G 4 HOH A 85 785 48 HOH HOH . G 4 HOH A 86 786 141 HOH HOH . G 4 HOH A 87 787 55 HOH HOH . G 4 HOH A 88 788 25 HOH HOH . G 4 HOH A 89 789 95 HOH HOH . G 4 HOH A 90 790 20 HOH HOH . G 4 HOH A 91 791 115 HOH HOH . G 4 HOH A 92 792 26 HOH HOH . G 4 HOH A 93 793 50 HOH HOH . G 4 HOH A 94 794 28 HOH HOH . G 4 HOH A 95 795 136 HOH HOH . G 4 HOH A 96 796 24 HOH HOH . G 4 HOH A 97 797 63 HOH HOH . G 4 HOH A 98 798 8 HOH HOH . G 4 HOH A 99 799 41 HOH HOH . G 4 HOH A 100 800 40 HOH HOH . G 4 HOH A 101 801 58 HOH HOH . G 4 HOH A 102 802 2 HOH HOH . G 4 HOH A 103 803 53 HOH HOH . G 4 HOH A 104 804 51 HOH HOH . G 4 HOH A 105 805 92 HOH HOH . G 4 HOH A 106 806 37 HOH HOH . G 4 HOH A 107 807 12 HOH HOH . G 4 HOH A 108 808 126 HOH HOH . G 4 HOH A 109 809 4 HOH HOH . G 4 HOH A 110 810 56 HOH HOH . G 4 HOH A 111 811 118 HOH HOH . G 4 HOH A 112 812 52 HOH HOH . G 4 HOH A 113 813 57 HOH HOH . G 4 HOH A 114 814 93 HOH HOH . G 4 HOH A 115 815 6 HOH HOH . G 4 HOH A 116 816 7 HOH HOH . G 4 HOH A 117 817 34 HOH HOH . G 4 HOH A 118 818 49 HOH HOH . G 4 HOH A 119 819 60 HOH HOH . G 4 HOH A 120 820 11 HOH HOH . G 4 HOH A 121 821 38 HOH HOH . G 4 HOH A 122 822 23 HOH HOH . G 4 HOH A 123 823 30 HOH HOH . G 4 HOH A 124 824 54 HOH HOH . G 4 HOH A 125 825 44 HOH HOH . G 4 HOH A 126 826 150 HOH HOH . G 4 HOH A 127 827 140 HOH HOH . G 4 HOH A 128 828 29 HOH HOH . G 4 HOH A 129 829 15 HOH HOH . G 4 HOH A 130 830 32 HOH HOH . G 4 HOH A 131 831 39 HOH HOH . G 4 HOH A 132 832 13 HOH HOH . G 4 HOH A 133 833 139 HOH HOH . G 4 HOH A 134 834 135 HOH HOH . G 4 HOH A 135 835 143 HOH HOH . G 4 HOH A 136 836 22 HOH HOH . G 4 HOH A 137 837 113 HOH HOH . G 4 HOH A 138 838 71 HOH HOH . G 4 HOH A 139 839 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 3 -1.925 -22.963 -9.913 1 85.55 0 C1 NAG 602 A 1 HETATM 2 C C2 NAG . . . D 3 -1.126 -21.662 -10.031 1 90.81 0 C2 NAG 602 A 1 HETATM 3 C C3 NAG . . . D 3 -2.027 -20.434 -10.231 1 95.44 0 C3 NAG 602 A 1 HETATM 4 C C4 NAG . . . D 3 -3.096 -20.668 -11.294 1 95.96 0 C4 NAG 602 A 1 HETATM 5 C C5 NAG . . . D 3 -3.863 -21.923 -10.933 1 88.91 0 C5 NAG 602 A 1 HETATM 6 C C6 NAG . . . D 3 -4.929 -22.199 -11.97 1 81.95 0 C6 NAG 602 A 1 HETATM 7 C C7 NAG . . . D 3 1.089 -21.19 -9.065 1 97.84 0 C7 NAG 602 A 1 HETATM 8 C C8 NAG . . . D 3 1.826 -20.638 -7.869 1 98.11 0 C8 NAG 602 A 1 HETATM 9 N N2 NAG . . . D 3 -0.207 -21.516 -8.9 1 96.17 0 N2 NAG 602 A 1 HETATM 10 O O3 NAG . . . D 3 -1.231 -19.333 -10.671 1 103.25 0 O3 NAG 602 A 1 HETATM 11 O O4 NAG . . . D 3 -4.006 -19.56 -11.391 1 104.83 0 O4 NAG 602 A 1 HETATM 12 O O5 NAG . . . D 3 -2.961 -23.025 -10.912 1 84.42 0 O5 NAG 602 A 1 HETATM 13 O O6 NAG . . . D 3 -6.067 -22.597 -11.22 1 80.25 0 O6 NAG 602 A 1 HETATM 14 O O7 NAG . . . D 3 1.663 -21.332 -10.137 1 98.06 0 O7 NAG 602 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #