data_8FAW # _model_server_result.job_id 6IkDbY7eZPymktet5P4r8A _model_server_result.datetime_utc '2024-12-05 02:51:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8faw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 8FAW # _exptl.entry_id 8FAW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8FAW _cell.length_a 100.349 _cell.length_b 100.349 _cell.length_c 395.503 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FAW _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -50.1745 -86.904783 0 3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 50.1745 -86.904783 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 GAL BGC C1 O1 . O4 HO4 . sing 3 ? 3 3 2 NAG GAL C1 O1 . O3 HO3 . sing 4 ? 3 4 3 GAL NAG C1 O1 . O4 HO4 . sing 5 ? 3 5 4 SIA GAL C2 O2 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 1 NAG 2 n B NAG 2 B 2 NAG B 2 NAG 2 n C NAG 1 C 1 NAG C 1 NAG 2 n C NAG 2 C 2 NAG C 2 NAG 3 n D BGC 1 D 1 BGC A 601 LST 3 n D GAL 2 D 2 GAL A 601 LST 3 n D NAG 3 D 3 NAG A 601 LST 3 n D GAL 4 D 4 GAL A 601 LST 3 n D SIA 5 D 5 SIA A 601 LST # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 14 1_555 A SG CYS 456 A CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? disulf ? disulf2 A SG CYS 42 A CYS 52 1_555 A SG CYS 267 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? disulf ? disulf3 A SG CYS 54 A CYS 64 1_555 A SG CYS 66 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? disulf ? disulf4 A SG CYS 87 A CYS 97 1_555 A SG CYS 129 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? disulf ? disulf5 A SG CYS 271 A CYS 281 1_555 A SG CYS 295 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf6 A SG CYS 463 A CYS 473 1_555 A SG CYS 467 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? covale ? covale1 A ND2 ASN 53 A ASN 63 1_555 F C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale2 A ND2 ASN 155 A ASN 165 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale3 A ND2 ASN 236 A ASN 246 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale4 A ND2 ASN 275 A ASN 285 1_555 E C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale7 D O4 BGC . D BGC 1 1_555 D C1 GAL . D GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? covale ? covale8 D O3 GAL . D GAL 2 1_555 D C1 NAG . D NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? covale ? covale9 D O4 NAG . D NAG 3 1_555 D C1 GAL . D GAL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? covale ? covale10 D O6 GAL . D GAL 4 1_555 D C2 SIA . D SIA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 285 n n C1 O1 NAG sing 286 n n C1 O5 NAG sing 287 n n C1 H1 NAG sing 288 n n C2 C3 NAG sing 289 n n C2 N2 NAG sing 290 n n C2 H2 NAG sing 291 n n C3 C4 NAG sing 292 n n C3 O3 NAG sing 293 n n C3 H3 NAG sing 294 n n C4 C5 NAG sing 295 n n C4 O4 NAG sing 296 n n C4 H4 NAG sing 297 n n C5 C6 NAG sing 298 n n C5 O5 NAG sing 299 n n C5 H5 NAG sing 300 n n C6 O6 NAG sing 301 n n C6 H61 NAG sing 302 n n C6 H62 NAG sing 303 n n C7 C8 NAG sing 304 n n C7 N2 NAG sing 305 n n C7 O7 NAG doub 306 n n C8 H81 NAG sing 307 n n C8 H82 NAG sing 308 n n C8 H83 NAG sing 309 n n N2 HN2 NAG sing 310 n n O1 HO1 NAG sing 311 n n O3 HO3 NAG sing 312 n n O4 HO4 NAG sing 313 n n O6 HO6 NAG sing 314 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8FAW _atom_sites.fract_transf_matrix[1][1] 0.009965 _atom_sites.fract_transf_matrix[1][2] 0.005753 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011507 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002528 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG A 1 601 5 NAG NAG . F 4 NAG A 1 602 6 NAG NAG . G 5 HOH A 1 701 108 HOH HOH . G 5 HOH A 2 702 105 HOH HOH . G 5 HOH A 3 703 66 HOH HOH . G 5 HOH A 4 704 80 HOH HOH . G 5 HOH A 5 705 114 HOH HOH . G 5 HOH A 6 706 94 HOH HOH . G 5 HOH A 7 707 99 HOH HOH . G 5 HOH A 8 708 81 HOH HOH . G 5 HOH A 9 709 79 HOH HOH . G 5 HOH A 10 710 106 HOH HOH . G 5 HOH A 11 711 102 HOH HOH . G 5 HOH A 12 712 103 HOH HOH . G 5 HOH A 13 713 88 HOH HOH . G 5 HOH A 14 714 72 HOH HOH . G 5 HOH A 15 715 61 HOH HOH . G 5 HOH A 16 716 91 HOH HOH . G 5 HOH A 17 717 64 HOH HOH . G 5 HOH A 18 718 116 HOH HOH . G 5 HOH A 19 719 95 HOH HOH . G 5 HOH A 20 720 69 HOH HOH . G 5 HOH A 21 721 115 HOH HOH . G 5 HOH A 22 722 82 HOH HOH . G 5 HOH A 23 723 74 HOH HOH . G 5 HOH A 24 724 71 HOH HOH . G 5 HOH A 25 725 97 HOH HOH . G 5 HOH A 26 726 96 HOH HOH . G 5 HOH A 27 727 55 HOH HOH . G 5 HOH A 28 728 63 HOH HOH . G 5 HOH A 29 729 60 HOH HOH . G 5 HOH A 30 730 54 HOH HOH . G 5 HOH A 31 731 98 HOH HOH . G 5 HOH A 32 732 77 HOH HOH . G 5 HOH A 33 733 100 HOH HOH . G 5 HOH A 34 734 93 HOH HOH . G 5 HOH A 35 735 68 HOH HOH . G 5 HOH A 36 736 56 HOH HOH . G 5 HOH A 37 737 52 HOH HOH . G 5 HOH A 38 738 112 HOH HOH . G 5 HOH A 39 739 65 HOH HOH . G 5 HOH A 40 740 73 HOH HOH . G 5 HOH A 41 741 22 HOH HOH . G 5 HOH A 42 742 59 HOH HOH . G 5 HOH A 43 743 86 HOH HOH . G 5 HOH A 44 744 70 HOH HOH . G 5 HOH A 45 745 101 HOH HOH . G 5 HOH A 46 746 67 HOH HOH . G 5 HOH A 47 747 87 HOH HOH . G 5 HOH A 48 748 119 HOH HOH . G 5 HOH A 49 749 107 HOH HOH . G 5 HOH A 50 750 53 HOH HOH . G 5 HOH A 51 751 25 HOH HOH . G 5 HOH A 52 752 78 HOH HOH . G 5 HOH A 53 753 57 HOH HOH . G 5 HOH A 54 754 26 HOH HOH . G 5 HOH A 55 755 118 HOH HOH . G 5 HOH A 56 756 3 HOH HOH . G 5 HOH A 57 757 83 HOH HOH . G 5 HOH A 58 758 33 HOH HOH . G 5 HOH A 59 759 29 HOH HOH . G 5 HOH A 60 760 117 HOH HOH . G 5 HOH A 61 761 31 HOH HOH . G 5 HOH A 62 762 76 HOH HOH . G 5 HOH A 63 763 58 HOH HOH . G 5 HOH A 64 764 46 HOH HOH . G 5 HOH A 65 765 6 HOH HOH . G 5 HOH A 66 766 12 HOH HOH . G 5 HOH A 67 767 62 HOH HOH . G 5 HOH A 68 768 36 HOH HOH . G 5 HOH A 69 769 17 HOH HOH . G 5 HOH A 70 770 19 HOH HOH . G 5 HOH A 71 771 24 HOH HOH . G 5 HOH A 72 772 23 HOH HOH . G 5 HOH A 73 773 109 HOH HOH . G 5 HOH A 74 774 9 HOH HOH . G 5 HOH A 75 775 85 HOH HOH . G 5 HOH A 76 776 5 HOH HOH . G 5 HOH A 77 777 92 HOH HOH . G 5 HOH A 78 778 14 HOH HOH . G 5 HOH A 79 779 32 HOH HOH . G 5 HOH A 80 780 28 HOH HOH . G 5 HOH A 81 781 30 HOH HOH . G 5 HOH A 82 782 18 HOH HOH . G 5 HOH A 83 783 41 HOH HOH . G 5 HOH A 84 784 49 HOH HOH . G 5 HOH A 85 785 11 HOH HOH . G 5 HOH A 86 786 35 HOH HOH . G 5 HOH A 87 787 43 HOH HOH . G 5 HOH A 88 788 40 HOH HOH . G 5 HOH A 89 789 21 HOH HOH . G 5 HOH A 90 790 16 HOH HOH . G 5 HOH A 91 791 47 HOH HOH . G 5 HOH A 92 792 4 HOH HOH . G 5 HOH A 93 793 15 HOH HOH . G 5 HOH A 94 794 48 HOH HOH . G 5 HOH A 95 795 39 HOH HOH . G 5 HOH A 96 796 38 HOH HOH . G 5 HOH A 97 797 20 HOH HOH . G 5 HOH A 98 798 42 HOH HOH . G 5 HOH A 99 799 7 HOH HOH . G 5 HOH A 100 800 44 HOH HOH . G 5 HOH A 101 801 34 HOH HOH . G 5 HOH A 102 802 89 HOH HOH . G 5 HOH A 103 803 10 HOH HOH . G 5 HOH A 104 804 1 HOH HOH . G 5 HOH A 105 805 2 HOH HOH . G 5 HOH A 106 806 13 HOH HOH . G 5 HOH A 107 807 27 HOH HOH . G 5 HOH A 108 808 104 HOH HOH . G 5 HOH A 109 809 37 HOH HOH . G 5 HOH A 110 810 8 HOH HOH . G 5 HOH A 111 811 84 HOH HOH . G 5 HOH A 112 812 45 HOH HOH . G 5 HOH A 113 813 110 HOH HOH . G 5 HOH A 114 814 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 4 -1.915 -23.462 -9.874 1 89.36 ? C1 NAG 602 A 1 HETATM 2 C C2 NAG . . . F 4 -1.219 -22.109 -9.833 1 90 ? C2 NAG 602 A 1 HETATM 3 C C3 NAG . . . F 4 -2.216 -20.966 -9.764 1 93.91 ? C3 NAG 602 A 1 HETATM 4 C C4 NAG . . . F 4 -3.371 -21.148 -10.746 1 96.75 ? C4 NAG 602 A 1 HETATM 5 C C5 NAG . . . F 4 -3.987 -22.531 -10.535 1 93.47 ? C5 NAG 602 A 1 HETATM 6 C C6 NAG . . . F 4 -5.274 -22.753 -11.325 1 85.85 ? C6 NAG 602 A 1 HETATM 7 C C7 NAG . . . F 4 0.919 -22.156 -8.671 1 108.31 ? C7 NAG 602 A 1 HETATM 8 C C8 NAG . . . F 4 1.511 -22.821 -7.445 1 101.32 ? C8 NAG 602 A 1 HETATM 9 N N2 NAG . . . F 4 -0.406 -22.05 -8.642 1 102.94 ? N2 NAG 602 A 1 HETATM 10 O O3 NAG . . . F 4 -1.513 -19.751 -10.032 1 108.18 ? O3 NAG 602 A 1 HETATM 11 O O4 NAG . . . F 4 -4.344 -20.118 -10.542 1 107.93 ? O4 NAG 602 A 1 HETATM 12 O O5 NAG . . . F 4 -2.969 -23.493 -10.858 1 86.39 ? O5 NAG 602 A 1 HETATM 13 O O6 NAG . . . F 4 -4.986 -23.342 -12.598 1 88.07 ? O6 NAG 602 A 1 HETATM 14 O O7 NAG . . . F 4 1.574 -21.737 -9.626 1 91.48 ? O7 NAG 602 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #