data_8FAZ # _model_server_result.job_id SJkPldK5fJb8HyryYmt7VQ _model_server_result.datetime_utc '2024-11-22 16:52:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8faz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 8FAZ # _exptl.entry_id 8FAZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FAZ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FAZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OG1 THR 114 D THR 114 1_555 G MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc2 F O2G ANP . D ANP 401 1_555 G MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc3 F O3G ANP . D ANP 401 1_555 G MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc4 F O2B ANP . D ANP 401 1_555 G MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc5 D OG1 THR 55 X THR 55 1_555 I MG MG . X MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc6 H O1G ANP . X ANP 301 1_555 I MG MG . X MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc7 H O3G ANP . X ANP 301 1_555 I MG MG . X MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc8 H O1B ANP . X ANP 301 1_555 I MG MG . X MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 57 n n PG O2G ANP sing 58 n n PG O3G ANP sing 59 n n PG N3B ANP sing 60 n n O2G HOG2 ANP sing 61 n n O3G HOG3 ANP sing 62 n n PB O1B ANP doub 63 n n PB O2B ANP sing 64 n n PB N3B ANP sing 65 n n PB O3A ANP sing 66 n n O2B HOB2 ANP sing 67 n n N3B HNB1 ANP sing 68 n n PA O1A ANP doub 69 n n PA O2A ANP sing 70 n n PA O3A ANP sing 71 n n PA O5' ANP sing 72 n n O2A HOA2 ANP sing 73 n n O5' C5' ANP sing 74 n n C5' C4' ANP sing 75 n n C5' "H5'1" ANP sing 76 n n C5' "H5'2" ANP sing 77 n n C4' O4' ANP sing 78 n n C4' C3' ANP sing 79 n n C4' H4' ANP sing 80 n n O4' C1' ANP sing 81 n n C3' O3' ANP sing 82 n n C3' C2' ANP sing 83 n n C3' H3' ANP sing 84 n n O3' HO3' ANP sing 85 n n C2' O2' ANP sing 86 n n C2' C1' ANP sing 87 n n C2' H2' ANP sing 88 n n O2' HO2' ANP sing 89 n n C1' N9 ANP sing 90 n n C1' H1' ANP sing 91 n n N9 C8 ANP sing 92 n y N9 C4 ANP sing 93 n y C8 N7 ANP doub 94 n y C8 H8 ANP sing 95 n n N7 C5 ANP sing 96 n y C5 C6 ANP sing 97 n y C5 C4 ANP doub 98 n y C6 N6 ANP sing 99 n n C6 N1 ANP doub 100 n y N6 HN61 ANP sing 101 n n N6 HN62 ANP sing 102 n n N1 C2 ANP sing 103 n y C2 N3 ANP doub 104 n y C2 H2 ANP sing 105 n n N3 C4 ANP sing 106 n y # _atom_sites.entry_id 8FAZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 ADP C 1 401 401 ADP ADP . F 6 ANP D 1 401 401 ANP ANP . G 7 MG D 1 402 1 MG MG . H 6 ANP X 1 301 301 ANP ANP . I 7 MG X 1 302 2 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . H 6 116.346 118.35 97.185 1 57.59 ? PG ANP 301 X 1 HETATM 2 O O1G ANP . . . H 6 114.966 118.864 97.443 1 49.4 ? O1G ANP 301 X 1 HETATM 3 O O2G ANP . . . H 6 116.708 117.255 98.26 1 63.01 ? O2G ANP 301 X 1 HETATM 4 O O3G ANP . . . H 6 116.411 117.717 95.738 1 57.14 ? O3G ANP 301 X 1 HETATM 5 P PB ANP . . . H 6 117.614 120.345 95.781 1 58.19 ? PB ANP 301 X 1 HETATM 6 O O1B ANP . . . H 6 116.494 119.91 94.9 1 60.51 ? O1B ANP 301 X 1 HETATM 7 O O2B ANP . . . H 6 118.968 119.917 95.145 1 61.4 ? O2B ANP 301 X 1 HETATM 8 N N3B ANP . . . H 6 117.448 119.628 97.285 1 49.01 ? N3B ANP 301 X 1 HETATM 9 P PA ANP . . . H 6 116.497 122.753 95.173 1 63.2 ? PA ANP 301 X 1 HETATM 10 O O1A ANP . . . H 6 116.617 122.583 93.708 1 53.99 ? O1A ANP 301 X 1 HETATM 11 O O2A ANP . . . H 6 115.132 122.358 95.744 1 64.73 ? O2A ANP 301 X 1 HETATM 12 O O3A ANP . . . H 6 117.588 121.894 95.938 1 53.1 ? O3A ANP 301 X 1 HETATM 13 O O5' ANP . . . H 6 116.866 124.252 95.514 1 53.88 ? O5' ANP 301 X 1 HETATM 14 C C5' ANP . . . H 6 118.056 124.846 94.967 1 54.17 ? C5' ANP 301 X 1 HETATM 15 C C4' ANP . . . H 6 118.374 126.117 95.712 1 49.2 ? C4' ANP 301 X 1 HETATM 16 O O4' ANP . . . H 6 117.865 127.244 94.983 1 47.69 ? O4' ANP 301 X 1 HETATM 17 C C3' ANP . . . H 6 117.739 126.251 97.088 1 51.96 ? C3' ANP 301 X 1 HETATM 18 O O3' ANP . . . H 6 118.532 125.601 98.074 1 59.86 ? O3' ANP 301 X 1 HETATM 19 C C2' ANP . . . H 6 117.699 127.772 97.3 1 53.75 ? C2' ANP 301 X 1 HETATM 20 O O2' ANP . . . H 6 118.822 128.224 98.048 1 58.69 ? O2' ANP 301 X 1 HETATM 21 C C1' ANP . . . H 6 117.751 128.337 95.871 1 50.93 ? C1' ANP 301 X 1 HETATM 22 N N9 ANP . . . H 6 116.576 129.112 95.493 1 46.85 ? N9 ANP 301 X 1 HETATM 23 C C8 ANP . . . H 6 115.282 128.67 95.41 1 53.19 ? C8 ANP 301 X 1 HETATM 24 N N7 ANP . . . H 6 114.426 129.589 95.036 1 53.91 ? N7 ANP 301 X 1 HETATM 25 C C5 ANP . . . H 6 115.213 130.716 94.856 1 50.03 ? C5 ANP 301 X 1 HETATM 26 C C6 ANP . . . H 6 114.907 132.032 94.46 1 54.31 ? C6 ANP 301 X 1 HETATM 27 N N6 ANP . . . H 6 113.675 132.451 94.162 1 57.82 ? N6 ANP 301 X 1 HETATM 28 N N1 ANP . . . H 6 115.927 132.915 94.38 1 50.98 ? N1 ANP 301 X 1 HETATM 29 C C2 ANP . . . H 6 117.161 132.501 94.677 1 50.85 ? C2 ANP 301 X 1 HETATM 30 N N3 ANP . . . H 6 117.569 131.289 95.061 1 49.32 ? N3 ANP 301 X 1 HETATM 31 C C4 ANP . . . H 6 116.54 130.436 95.131 1 48.68 ? C4 ANP 301 X 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #