data_8FB9
#
_model_server_result.job_id            J-cGuJvV5U8LFEZC6ONXlQ 
_model_server_result.datetime_utc      '2025-03-05 22:12:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8fb9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"KA","auth_seq_id":101}' 
#
_entry.id    8FB9 
#
_exptl.entry_id    8FB9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              536.873 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            LYCOPENE 
_entity.pdbx_number_of_molecules    16 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8FB9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8FB9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    32-meric 
_pdbx_struct_assembly.oligomeric_count      32 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 IA N N 
? 6 KA N N 
? 6 QA N N 
? 6 SA N N 
? 6 WA N N 
? 6 AB N N 
? 6 EB N N 
? 6 IB N N 
? 6 OB N N 
? 6 QB N N 
? 6 UB N N 
? 6 YB N N 
? 6 CC N N 
? 6 GC N N 
? 6 KC N N 
? 6 OC N N 
#
_chem_comp.formula           'C40 H56' 
_chem_comp.formula_weight    536.873 
_chem_comp.id                LYC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              LYCOPENE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 LYC sing 327 n n 
C1 H11A LYC sing 328 n n 
C1 H12 LYC sing 329 n n 
C1 H13 LYC sing 330 n n 
C2 C3 LYC sing 331 n n 
C2 C4 LYC doub 332 n n 
C3 H31 LYC sing 333 n n 
C3 H32 LYC sing 334 n n 
C3 H33 LYC sing 335 n n 
C4 C5 LYC sing 336 n n 
C4 H4 LYC sing 337 n n 
C5 C6 LYC sing 338 n n 
C5 H51 LYC sing 339 n n 
C5 H52 LYC sing 340 n n 
C6 C7 LYC sing 341 n n 
C6 H61 LYC sing 342 n n 
C6 H62 LYC sing 343 n n 
C7 C8 LYC sing 344 n n 
C7 C9 LYC doub 345 e n 
C8 H81 LYC sing 346 n n 
C8 H82 LYC sing 347 n n 
C8 H83 LYC sing 348 n n 
C9 C10 LYC sing 349 n n 
C9 H9 LYC sing 350 n n 
C10 C11 LYC doub 351 e n 
C10 H10 LYC sing 352 n n 
C11 C12 LYC sing 353 n n 
C11 H11 LYC sing 354 n n 
C12 C13 LYC sing 355 n n 
C12 C14 LYC doub 356 e n 
C13 H131 LYC sing 357 n n 
C13 H132 LYC sing 358 n n 
C13 H133 LYC sing 359 n n 
C14 C15 LYC sing 360 n n 
C14 H14 LYC sing 361 n n 
C15 C16 LYC doub 362 e n 
C15 H15 LYC sing 363 n n 
C16 C17 LYC sing 364 n n 
C16 H16 LYC sing 365 n n 
C17 C18 LYC sing 366 n n 
C17 C19 LYC doub 367 e n 
C18 H181 LYC sing 368 n n 
C18 H182 LYC sing 369 n n 
C18 H183 LYC sing 370 n n 
C19 C20 LYC sing 371 n n 
C19 H19 LYC sing 372 n n 
C20 C21 LYC doub 373 e n 
C20 H20 LYC sing 374 n n 
C21 C50 LYC sing 375 n n 
C21 H21 LYC sing 376 n n 
C50 C51 LYC doub 377 e n 
C50 H50 LYC sing 378 n n 
C51 C52 LYC sing 379 n n 
C51 C53 LYC sing 380 n n 
C52 H521 LYC sing 381 n n 
C52 H522 LYC sing 382 n n 
C52 H523 LYC sing 383 n n 
C53 C54 LYC doub 384 e n 
C53 H53 LYC sing 385 n n 
C54 C55 LYC sing 386 n n 
C54 H54 LYC sing 387 n n 
C55 C56 LYC doub 388 e n 
C55 H55 LYC sing 389 n n 
C56 C57 LYC sing 390 n n 
C56 C58 LYC sing 391 n n 
C57 H571 LYC sing 392 n n 
C57 H572 LYC sing 393 n n 
C57 H573 LYC sing 394 n n 
C58 C59 LYC doub 395 e n 
C58 H58 LYC sing 396 n n 
C59 C60 LYC sing 397 n n 
C59 H59 LYC sing 398 n n 
C60 C61 LYC doub 399 e n 
C60 H60 LYC sing 400 n n 
C61 C62 LYC sing 401 n n 
C61 C63 LYC sing 402 n n 
C62 H621 LYC sing 403 n n 
C62 H622 LYC sing 404 n n 
C62 H623 LYC sing 405 n n 
C63 C64 LYC sing 406 n n 
C63 H631 LYC sing 407 n n 
C63 H632 LYC sing 408 n n 
C64 C65 LYC sing 409 n n 
C64 H641 LYC sing 410 n n 
C64 H642 LYC sing 411 n n 
C65 C66 LYC doub 412 n n 
C65 H65 LYC sing 413 n n 
C66 C67 LYC sing 414 n n 
C66 C68 LYC sing 415 n n 
C67 H671 LYC sing 416 n n 
C67 H672 LYC sing 417 n n 
C67 H673 LYC sing 418 n n 
C68 H681 LYC sing 419 n n 
C68 H682 LYC sing 420 n n 
C68 H683 LYC sing 421 n n 
#
_atom_sites.entry_id                     8FB9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
GA 5 BCL A 1 101 101 BCL BCL . 
HA 5 BCL A 1 102 102 BCL BCL . 
IA 6 LYC A 1 103 103 LYC LYC . 
JA 5 BCL B 1 101 101 BCL BCL . 
KA 6 LYC D 1 101 101 LYC LYC . 
LA 5 BCL D 1 102 102 BCL BCL . 
MA 5 BCL D 1 103 103 BCL BCL . 
NA 5 BCL E 1 101 101 BCL BCL . 
OA 5 BCL C 1 101 101 BCL BCL . 
PA 5 BCL C 1 102 102 BCL BCL . 
QA 6 LYC C 1 103 103 LYC LYC . 
RA 5 BCL F 1 101 101 BCL BCL . 
SA 6 LYC G 1 101 101 LYC LYC . 
TA 5 BCL G 1 102 102 BCL BCL . 
UA 5 BCL G 1 103 103 BCL BCL . 
VA 5 BCL H 1 101 101 BCL BCL . 
WA 6 LYC I 1 101 101 LYC LYC . 
XA 5 BCL I 1 102 102 BCL BCL . 
YA 5 BCL I 1 103 103 BCL BCL . 
ZA 5 BCL J 1 101 101 BCL BCL . 
AB 6 LYC K 1 101 101 LYC LYC . 
BB 5 BCL K 1 102 102 BCL BCL . 
CB 5 BCL K 1 103 103 BCL BCL . 
DB 5 BCL L 1 101 101 BCL BCL . 
EB 6 LYC c 1 101 101 LYC LYC . 
FB 5 BCL c 1 102 102 BCL BCL . 
GB 5 BCL c 1 103 103 BCL BCL . 
HB 5 BCL d 1 101 101 BCL BCL . 
IB 6 LYC e 1 101 101 LYC LYC . 
JB 5 BCL e 1 102 102 BCL BCL . 
KB 5 BCL e 1 103 103 BCL BCL . 
LB 5 BCL f 1 101 101 BCL BCL . 
MB 5 BCL M 1 101 101 BCL BCL . 
NB 5 BCL M 1 102 102 BCL BCL . 
OB 6 LYC M 1 103 103 LYC LYC . 
PB 5 BCL N 1 101 101 BCL BCL . 
QB 6 LYC O 1 101 101 LYC LYC . 
RB 5 BCL O 1 102 102 BCL BCL . 
SB 5 BCL O 1 103 103 BCL BCL . 
TB 5 BCL P 1 101 101 BCL BCL . 
UB 6 LYC Q 1 101 101 LYC LYC . 
VB 5 BCL Q 1 102 102 BCL BCL . 
WB 5 BCL Q 1 103 103 BCL BCL . 
XB 5 BCL R 1 101 101 BCL BCL . 
YB 6 LYC S 1 101 101 LYC LYC . 
ZB 5 BCL S 1 102 102 BCL BCL . 
AC 5 BCL S 1 103 103 BCL BCL . 
BC 5 BCL T 1 101 101 BCL BCL . 
CC 6 LYC U 1 101 101 LYC LYC . 
DC 5 BCL U 1 102 102 BCL BCL . 
EC 5 BCL U 1 103 103 BCL BCL . 
FC 5 BCL V 1 101 101 BCL BCL . 
GC 6 LYC W 1 101 101 LYC LYC . 
HC 5 BCL W 1 102 102 BCL BCL . 
IC 5 BCL W 1 103 103 BCL BCL . 
JC 5 BCL X 1 101 101 BCL BCL . 
KC 6 LYC Y 1 101 101 LYC LYC . 
LC 5 BCL Y 1 102 102 BCL BCL . 
MC 5 BCL Y 1 103 103 BCL BCL . 
NC 5 BCL Z 1 101 101 BCL BCL . 
OC 6 LYC a 1 101 101 LYC LYC . 
PC 5 BCL a 1 102 102 BCL BCL . 
QC 5 BCL a 1 103 103 BCL BCL . 
RC 5 BCL b 1 101 101 BCL BCL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LYC . . . KA 6 153.984 157.136 139.027 1 70.21 ? C1 LYC 101 D 1 
HETATM 2 C C2 LYC . . . KA 6 152.964 158.029 138.343 1 61.33 ? C2 LYC 101 D 1 
HETATM 3 C C3 LYC . . . KA 6 151.926 158.523 139.294 1 60.89 ? C3 LYC 101 D 1 
HETATM 4 C C4 LYC . . . KA 6 152.965 158.038 136.996 1 62.21 ? C4 LYC 101 D 1 
HETATM 5 C C5 LYC . . . KA 6 151.856 158.041 135.966 1 58.96 ? C5 LYC 101 D 1 
HETATM 6 C C6 LYC . . . KA 6 151.779 156.956 134.858 1 55.01 ? C6 LYC 101 D 1 
HETATM 7 C C7 LYC . . . KA 6 152.659 156.529 133.647 1 50.15 ? C7 LYC 101 D 1 
HETATM 8 C C8 LYC . . . KA 6 154 157.12 133.306 1 44.68 ? C8 LYC 101 D 1 
HETATM 9 C C9 LYC . . . KA 6 152.003 155.704 132.806 1 48.29 ? C9 LYC 101 D 1 
HETATM 10 C C10 LYC . . . KA 6 152.415 155.132 131.529 1 49.67 ? C10 LYC 101 D 1 
HETATM 11 C C11 LYC . . . KA 6 151.491 154.511 130.76 1 48.84 ? C11 LYC 101 D 1 
HETATM 12 C C12 LYC . . . KA 6 151.675 153.88 129.431 1 46.19 ? C12 LYC 101 D 1 
HETATM 13 C C13 LYC . . . KA 6 152.916 154.33 128.73 1 39.8 ? C13 LYC 101 D 1 
HETATM 14 C C14 LYC . . . KA 6 150.68 153.14 128.902 1 43.97 ? C14 LYC 101 D 1 
HETATM 15 C C15 LYC . . . KA 6 150.588 152.696 127.506 1 43.38 ? C15 LYC 101 D 1 
HETATM 16 C C16 LYC . . . KA 6 149.687 151.818 127.054 1 41.65 ? C16 LYC 101 D 1 
HETATM 17 C C17 LYC . . . KA 6 149.516 151.283 125.678 1 42.16 ? C17 LYC 101 D 1 
HETATM 18 C C18 LYC . . . KA 6 150.471 151.733 124.586 1 34.86 ? C18 LYC 101 D 1 
HETATM 19 C C19 LYC . . . KA 6 148.643 150.276 125.547 1 40.56 ? C19 LYC 101 D 1 
HETATM 20 C C20 LYC . . . KA 6 148.183 149.66 124.31 1 36.94 ? C20 LYC 101 D 1 
HETATM 21 C C21 LYC . . . KA 6 147.334 148.642 124.391 1 33.9 ? C21 LYC 101 D 1 
HETATM 22 C C50 LYC . . . KA 6 147.023 147.746 123.273 1 37.04 ? C50 LYC 101 D 1 
HETATM 23 C C51 LYC . . . KA 6 146.2 146.662 123.335 1 39.47 ? C51 LYC 101 D 1 
HETATM 24 C C52 LYC . . . KA 6 145.377 146.237 124.546 1 34.38 ? C52 LYC 101 D 1 
HETATM 25 C C53 LYC . . . KA 6 145.821 145.931 122.089 1 39.69 ? C53 LYC 101 D 1 
HETATM 26 C C54 LYC . . . KA 6 145.148 144.766 122 1 39.98 ? C54 LYC 101 D 1 
HETATM 27 C C55 LYC . . . KA 6 144.664 144.195 120.74 1 38.6 ? C55 LYC 101 D 1 
HETATM 28 C C56 LYC . . . KA 6 143.911 143.087 120.63 1 38.2 ? C56 LYC 101 D 1 
HETATM 29 C C57 LYC . . . KA 6 143.216 142.363 121.772 1 33.57 ? C57 LYC 101 D 1 
HETATM 30 C C58 LYC . . . KA 6 143.578 142.574 119.28 1 38.9 ? C58 LYC 101 D 1 
HETATM 31 C C59 LYC . . . KA 6 143.306 141.29 118.984 1 34.24 ? C59 LYC 101 D 1 
HETATM 32 C C60 LYC . . . KA 6 142.993 140.835 117.63 1 31.54 ? C60 LYC 101 D 1 
HETATM 33 C C61 LYC . . . KA 6 142.578 139.588 117.312 1 30.29 ? C61 LYC 101 D 1 
HETATM 34 C C62 LYC . . . KA 6 142.085 138.496 118.276 1 25.9 ? C62 LYC 101 D 1 
HETATM 35 C C63 LYC . . . KA 6 142.405 139.248 115.843 1 28.77 ? C63 LYC 101 D 1 
HETATM 36 C C64 LYC . . . KA 6 143.593 138.463 115.389 1 27.44 ? C64 LYC 101 D 1 
HETATM 37 C C65 LYC . . . KA 6 143.535 138.245 113.927 1 32.4 ? C65 LYC 101 D 1 
HETATM 38 C C66 LYC . . . KA 6 144.228 137.359 113.193 1 32.69 ? C66 LYC 101 D 1 
HETATM 39 C C67 LYC . . . KA 6 144.06 137.416 111.677 1 28.87 ? C67 LYC 101 D 1 
HETATM 40 C C68 LYC . . . KA 6 145.382 136.524 113.7 1 29.37 ? C68 LYC 101 D 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           216 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           40 
#