data_8FBH # _model_server_result.job_id s7R7ehwOsMvU-toA6gEXRw _model_server_result.datetime_utc '2024-12-02 12:18:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fbh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2004}' # _entry.id 8FBH # _exptl.entry_id 8FBH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FBH _cell.length_a 66.293 _cell.length_b 67.382 _cell.length_c 70.025 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FBH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 45 A CYS 1793 1_555 C ZN ZN . A ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc2 A SG CYS 47 A CYS 1795 1_555 C ZN ZN . A ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc3 A SG CYS 55 A CYS 1803 1_555 C ZN ZN . A ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc4 A SG CYS 55 A CYS 1803 1_555 D ZN ZN . A ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc5 A SG CYS 61 A CYS 1809 1_555 C ZN ZN . A ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc6 A SG CYS 70 A CYS 1818 1_555 D ZN ZN . A ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc7 A SG CYS 75 A CYS 1823 1_555 D ZN ZN . A ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc8 A SG CYS 81 A CYS 1829 1_555 D ZN ZN . A ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc9 A SG CYS 173 A CYS 1921 1_555 B ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc10 A SG CYS 220 A CYS 1968 1_555 B ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc11 A SG CYS 222 A CYS 1970 1_555 B ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc12 A SG CYS 227 A CYS 1975 1_555 B ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 8FBH _atom_sites.fract_transf_matrix[1][1] 0.015085 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 2001 3000 ZN ZN . C 2 ZN A 1 2002 3001 ZN ZN . D 2 ZN A 1 2003 3002 ZN ZN . E 3 SAM A 1 2004 4000 SAM SAM . F 4 SO4 A 1 2005 1 SO4 SO4 . G 5 UNX A 1 2006 1001 UNX UNX . H 5 UNX A 1 2007 1002 UNX UNX . I 5 UNX A 1 2008 1003 UNX UNX . J 6 HOH A 1 2101 48 HOH HOH . J 6 HOH A 2 2102 24 HOH HOH . J 6 HOH A 3 2103 41 HOH HOH . J 6 HOH A 4 2104 60 HOH HOH . J 6 HOH A 5 2105 35 HOH HOH . J 6 HOH A 6 2106 31 HOH HOH . J 6 HOH A 7 2107 39 HOH HOH . J 6 HOH A 8 2108 49 HOH HOH . J 6 HOH A 9 2109 38 HOH HOH . J 6 HOH A 10 2110 26 HOH HOH . J 6 HOH A 11 2111 21 HOH HOH . J 6 HOH A 12 2112 47 HOH HOH . J 6 HOH A 13 2113 40 HOH HOH . J 6 HOH A 14 2114 11 HOH HOH . J 6 HOH A 15 2115 42 HOH HOH . J 6 HOH A 16 2116 16 HOH HOH . J 6 HOH A 17 2117 7 HOH HOH . J 6 HOH A 18 2118 25 HOH HOH . J 6 HOH A 19 2119 4 HOH HOH . J 6 HOH A 20 2120 43 HOH HOH . J 6 HOH A 21 2121 46 HOH HOH . J 6 HOH A 22 2122 2 HOH HOH . J 6 HOH A 23 2123 45 HOH HOH . J 6 HOH A 24 2124 23 HOH HOH . J 6 HOH A 25 2125 15 HOH HOH . J 6 HOH A 26 2126 6 HOH HOH . J 6 HOH A 27 2127 14 HOH HOH . J 6 HOH A 28 2128 19 HOH HOH . J 6 HOH A 29 2129 30 HOH HOH . J 6 HOH A 30 2130 22 HOH HOH . J 6 HOH A 31 2131 50 HOH HOH . J 6 HOH A 32 2132 18 HOH HOH . J 6 HOH A 33 2133 13 HOH HOH . J 6 HOH A 34 2134 5 HOH HOH . J 6 HOH A 35 2135 37 HOH HOH . J 6 HOH A 36 2136 10 HOH HOH . J 6 HOH A 37 2137 20 HOH HOH . J 6 HOH A 38 2138 44 HOH HOH . J 6 HOH A 39 2139 29 HOH HOH . J 6 HOH A 40 2140 28 HOH HOH . J 6 HOH A 41 2141 32 HOH HOH . J 6 HOH A 42 2142 27 HOH HOH . J 6 HOH A 43 2143 57 HOH HOH . J 6 HOH A 44 2144 8 HOH HOH . J 6 HOH A 45 2145 58 HOH HOH . J 6 HOH A 46 2146 51 HOH HOH . J 6 HOH A 47 2147 17 HOH HOH . J 6 HOH A 48 2148 59 HOH HOH . J 6 HOH A 49 2149 9 HOH HOH . J 6 HOH A 50 2150 3 HOH HOH . J 6 HOH A 51 2151 36 HOH HOH . J 6 HOH A 52 2152 54 HOH HOH . J 6 HOH A 53 2153 33 HOH HOH . J 6 HOH A 54 2154 55 HOH HOH . J 6 HOH A 55 2155 1 HOH HOH . J 6 HOH A 56 2156 34 HOH HOH . J 6 HOH A 57 2157 56 HOH HOH . J 6 HOH A 58 2158 53 HOH HOH . J 6 HOH A 59 2159 12 HOH HOH . J 6 HOH A 60 2160 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . E 3 1.161 -1.838 -9.146 1 40.9 ? N SAM 2004 A 1 HETATM 2 C CA SAM . . . E 3 1.418 -1.668 -7.699 1 40.71 ? CA SAM 2004 A 1 HETATM 3 C C SAM . . . E 3 2.047 -2.96 -7.122 1 45.88 ? C SAM 2004 A 1 HETATM 4 O O SAM . . . E 3 2.542 -3.794 -7.938 1 40.24 ? O SAM 2004 A 1 HETATM 5 O OXT SAM . . . E 3 2.051 -3.086 -5.88 1 49.88 ? OXT SAM 2004 A 1 HETATM 6 C CB SAM . . . E 3 0.106 -1.315 -6.995 1 38.61 ? CB SAM 2004 A 1 HETATM 7 C CG SAM . . . E 3 -0.218 0.185 -7.065 1 41.43 ? CG SAM 2004 A 1 HETATM 8 S SD SAM . . . E 3 0.952 1.113 -6.02 1 43.94 ? SD SAM 2004 A 1 HETATM 9 C CE SAM . . . E 3 -0.171 2.054 -4.987 1 48.94 ? CE SAM 2004 A 1 HETATM 10 C C5' SAM . . . E 3 1.524 2.403 -7.151 1 40.93 ? C5' SAM 2004 A 1 HETATM 11 C C4' SAM . . . E 3 2.696 2.015 -8.017 1 42.41 ? C4' SAM 2004 A 1 HETATM 12 O O4' SAM . . . E 3 2.236 1.215 -9.143 1 48.5 ? O4' SAM 2004 A 1 HETATM 13 C C3' SAM . . . E 3 3.431 3.2 -8.637 1 42.14 ? C3' SAM 2004 A 1 HETATM 14 O O3' SAM . . . E 3 4.41 3.705 -7.736 1 39.05 ? O3' SAM 2004 A 1 HETATM 15 C C2' SAM . . . E 3 3.998 2.577 -9.924 1 44.67 ? C2' SAM 2004 A 1 HETATM 16 O O2' SAM . . . E 3 5.202 1.875 -9.704 1 47.17 ? O2' SAM 2004 A 1 HETATM 17 C C1' SAM . . . E 3 2.886 1.608 -10.337 1 43.85 ? C1' SAM 2004 A 1 HETATM 18 N N9 SAM . . . E 3 1.882 2.169 -11.243 1 44.9 ? N9 SAM 2004 A 1 HETATM 19 C C8 SAM . . . E 3 0.561 2.373 -10.945 1 44.84 ? C8 SAM 2004 A 1 HETATM 20 N N7 SAM . . . E 3 -0.136 2.854 -11.943 1 43.19 ? N7 SAM 2004 A 1 HETATM 21 C C5 SAM . . . E 3 0.781 2.975 -12.979 1 42.16 ? C5 SAM 2004 A 1 HETATM 22 C C6 SAM . . . E 3 0.65 3.429 -14.311 1 39.3 ? C6 SAM 2004 A 1 HETATM 23 N N6 SAM . . . E 3 -0.492 3.839 -14.85 1 35.06 ? N6 SAM 2004 A 1 HETATM 24 N N1 SAM . . . E 3 1.76 3.45 -15.072 1 43.08 ? N1 SAM 2004 A 1 HETATM 25 C C2 SAM . . . E 3 2.906 3.019 -14.53 1 43.78 ? C2 SAM 2004 A 1 HETATM 26 N N3 SAM . . . E 3 3.137 2.533 -13.317 1 44.83 ? N3 SAM 2004 A 1 HETATM 27 C C4 SAM . . . E 3 2.025 2.55 -12.566 1 44.22 ? C4 SAM 2004 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #