data_8FCB
#
_model_server_result.job_id            VZCx_KHyYDFk4OFVOe0pnQ 
_model_server_result.datetime_utc      '2024-10-11 06:23:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8fcb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":301}' 
#
_entry.id    8FCB 
#
_exptl.entry_id    8FCB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              539.246 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8FCB 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8FCB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 Q N N 
? 5 R N N 
? 5 S N N 
? 5 T N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3 S' 
_chem_comp.formula_weight    539.246 
_chem_comp.id                GSP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O3B GSP sing 129 n n 
PG S1G GSP doub 130 n n 
PG O2G GSP sing 131 n n 
PG O3G GSP sing 132 n n 
O3B PB GSP sing 133 n n 
O2G HOG2 GSP sing 134 n n 
O3G HOG3 GSP sing 135 n n 
PB O1B GSP doub 136 n n 
PB O2B GSP sing 137 n n 
PB O3A GSP sing 138 n n 
O2B HOB2 GSP sing 139 n n 
PA O1A GSP doub 140 n n 
PA O2A GSP sing 141 n n 
PA O3A GSP sing 142 n n 
PA O5' GSP sing 143 n n 
O2A HOA2 GSP sing 144 n n 
O5' C5' GSP sing 145 n n 
C5' C4' GSP sing 146 n n 
C5' "H5'1" GSP sing 147 n n 
C5' "H5'2" GSP sing 148 n n 
C4' O4' GSP sing 149 n n 
C4' C3' GSP sing 150 n n 
C4' H4' GSP sing 151 n n 
O4' C1' GSP sing 152 n n 
C3' O3' GSP sing 153 n n 
C3' C2' GSP sing 154 n n 
C3' H3' GSP sing 155 n n 
O3' HO3' GSP sing 156 n n 
C2' O2' GSP sing 157 n n 
C2' C1' GSP sing 158 n n 
C2' H2' GSP sing 159 n n 
O2' HO2' GSP sing 160 n n 
C1' N9 GSP sing 161 n n 
C1' H1' GSP sing 162 n n 
N9 C8 GSP sing 163 n y 
N9 C4 GSP sing 164 n y 
C8 N7 GSP doub 165 n y 
C8 H8 GSP sing 166 n n 
N7 C5 GSP sing 167 n y 
C5 C6 GSP sing 168 n n 
C5 C4 GSP doub 169 n y 
C6 O6 GSP doub 170 n n 
C6 N1 GSP sing 171 n n 
N1 C2 GSP sing 172 n n 
N1 HN1 GSP sing 173 n n 
C2 N2 GSP sing 174 n n 
C2 N3 GSP doub 175 n n 
N2 HN21 GSP sing 176 n n 
N2 HN22 GSP sing 177 n n 
N3 C4 GSP sing 178 n n 
#
_atom_sites.entry_id                     8FCB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 XQ3 A 1 901 801 XQ3 XQ3 . 
J 3 XQ3 B 1 901 801 XQ3 XQ3 . 
K 4 Y01 B 1 902 1001 Y01 Y01 . 
L 4 Y01 C 1 1001 1001 Y01 Y01 . 
M 3 XQ3 C 1 1002 801 XQ3 XQ3 . 
N 4 Y01 C 1 1003 1001 Y01 Y01 . 
O 3 XQ3 D 1 901 801 XQ3 XQ3 . 
P 4 Y01 D 1 902 1001 Y01 Y01 . 
Q 5 GSP E 1 301 301 GSP GSP . 
R 5 GSP F 1 301 301 GSP GSP . 
S 5 GSP G 1 301 301 GSP GSP . 
T 5 GSP H 1 301 301 GSP GSP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GSP . . . Q 5 214.283 145.069 121.33 1 30 ? PG GSP 301 E 1 
HETATM 2 O O3B GSP . . . Q 5 215.102 144.184 120.21 1 30 ? O3B GSP 301 E 1 
HETATM 3 S S1G GSP . . . Q 5 212.657 145.736 120.577 1 30 ? S1G GSP 301 E 1 
HETATM 4 O O2G GSP . . . Q 5 213.919 144.113 122.621 1 30 ? O2G GSP 301 E 1 
HETATM 5 O O3G GSP . . . Q 5 215.266 146.305 121.817 1 30 ? O3G GSP 301 E 1 
HETATM 6 P PB GSP . . . Q 5 216.733 143.932 120.307 1 30 ? PB GSP 301 E 1 
HETATM 7 O O1B GSP . . . Q 5 217.457 145.19 119.887 1 30 ? O1B GSP 301 E 1 
HETATM 8 O O2B GSP . . . Q 5 217.107 143.599 121.735 1 30 ? O2B GSP 301 E 1 
HETATM 9 P PA GSP . . . Q 5 216.109 141.53 118.794 1 30 ? PA GSP 301 E 1 
HETATM 10 O O1A GSP . . . Q 5 214.969 142.201 118.065 1 30 ? O1A GSP 301 E 1 
HETATM 11 O O2A GSP . . . Q 5 215.572 140.756 119.968 1 30 ? O2A GSP 301 E 1 
HETATM 12 O O3A GSP . . . Q 5 217.177 142.681 119.321 1 30 ? O3A GSP 301 E 1 
HETATM 13 O O5' GSP . . . Q 5 216.893 140.474 117.784 1 30 ? O5' GSP 301 E 1 
HETATM 14 C C5' GSP . . . Q 5 217.735 139.504 118.378 1 30 ? C5' GSP 301 E 1 
HETATM 15 C C4' GSP . . . Q 5 219.19 139.659 117.841 1 30 ? C4' GSP 301 E 1 
HETATM 16 O O4' GSP . . . Q 5 219.965 138.76 118.414 1 30 ? O4' GSP 301 E 1 
HETATM 17 C C3' GSP . . . Q 5 219.213 139.386 116.331 1 30 ? C3' GSP 301 E 1 
HETATM 18 O O3' GSP . . . Q 5 219.107 140.536 115.626 1 30 ? O3' GSP 301 E 1 
HETATM 19 C C2' GSP . . . Q 5 220.601 138.756 116.123 1 30 ? C2' GSP 301 E 1 
HETATM 20 O O2' GSP . . . Q 5 221.515 139.746 115.489 1 30 ? O2' GSP 301 E 1 
HETATM 21 C C1' GSP . . . Q 5 221.053 138.444 117.557 1 30 ? C1' GSP 301 E 1 
HETATM 22 N N9 GSP . . . Q 5 221.415 137.035 117.725 1 30 ? N9 GSP 301 E 1 
HETATM 23 C C8 GSP . . . Q 5 220.206 136.447 117.611 1 30 ? C8 GSP 301 E 1 
HETATM 24 N N7 GSP . . . Q 5 220.379 135.111 117.746 1 30 ? N7 GSP 301 E 1 
HETATM 25 C C5 GSP . . . Q 5 221.673 134.876 117.952 1 30 ? C5 GSP 301 E 1 
HETATM 26 C C6 GSP . . . Q 5 222.456 133.573 118.177 1 30 ? C6 GSP 301 E 1 
HETATM 27 O O6 GSP . . . Q 5 221.886 132.535 118.184 1 30 ? O6 GSP 301 E 1 
HETATM 28 N N1 GSP . . . Q 5 223.875 133.613 118.378 1 30 ? N1 GSP 301 E 1 
HETATM 29 C C2 GSP . . . Q 5 224.558 134.881 118.367 1 30 ? C2 GSP 301 E 1 
HETATM 30 N N2 GSP . . . Q 5 226.001 134.934 118.569 1 30 ? N2 GSP 301 E 1 
HETATM 31 N N3 GSP . . . Q 5 223.803 136.117 118.152 1 30 ? N3 GSP 301 E 1 
HETATM 32 C C4 GSP . . . Q 5 222.324 136.075 117.942 1 30 ? C4 GSP 301 E 1 
HETATM 33 H HOG2 GSP . . . Q 5 213.591 143.379 122.341 1 30 ? HOG2 GSP 301 E 1 
HETATM 34 H HOG3 GSP . . . Q 5 216.018 145.986 122.05 1 30 ? HOG3 GSP 301 E 1 
HETATM 35 H "H5'1" GSP . . . Q 5 217.397 138.623 118.161 1 30 ? "H5'1" GSP 301 E 1 
HETATM 36 H "H5'2" GSP . . . Q 5 217.74 139.622 119.342 1 30 ? "H5'2" GSP 301 E 1 
HETATM 37 H H4' GSP . . . Q 5 219.524 140.552 118.02 1 30 ? H4' GSP 301 E 1 
HETATM 38 H H3' GSP . . . Q 5 218.511 138.765 116.083 1 30 ? H3' GSP 301 E 1 
HETATM 39 H HO3' GSP . . . Q 5 218.315 140.609 115.331 1 30 ? HO3' GSP 301 E 1 
HETATM 40 H H2' GSP . . . Q 5 220.534 137.958 115.575 1 30 ? H2' GSP 301 E 1 
HETATM 41 H HO2' GSP . . . Q 5 221.976 140.131 116.088 1 30 ? HO2' GSP 301 E 1 
HETATM 42 H H1' GSP . . . Q 5 221.81 139.004 117.79 1 30 ? H1' GSP 301 E 1 
HETATM 43 H H8 GSP . . . Q 5 219.396 136.876 117.452 1 30 ? H8 GSP 301 E 1 
HETATM 44 H HN21 GSP . . . Q 5 226.405 135.692 118.562 1 30 ? HN21 GSP 301 E 1 
HETATM 45 H HN22 GSP . . . Q 5 226.447 134.21 118.696 1 30 ? HN22 GSP 301 E 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    64 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           45 
#