data_8FCC # _model_server_result.job_id 7xvut4-wWIyzCIG56D0v5w _model_server_result.datetime_utc '2024-11-13 06:33:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fcc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8FCC # _exptl.entry_id 8FCC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 407.427 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(9-{4-[(E)-2-cyanoethenyl]-2,6-dimethylphenyl}-8-oxo-8,9-dihydro-7H-purin-2-yl)amino]benzonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FCC _cell.length_a 120.103 _cell.length_b 154.763 _cell.length_c 154.669 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FCC _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H17 N7 O' _chem_comp.formula_weight 407.427 _chem_comp.id YO9 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(9-{4-[(E)-2-cyanoethenyl]-2,6-dimethylphenyl}-8-oxo-8,9-dihydro-7H-purin-2-yl)amino]benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N30 C29 YO9 trip 391 n n C29 C19 YO9 sing 392 n n C19 C18 YO9 doub 393 e n C18 C11 YO9 sing 394 n n C11 C12 YO9 doub 395 n y C11 C10 YO9 sing 396 n y C12 C13 YO9 sing 397 n y C10 C09 YO9 doub 398 n y C13 C16 YO9 sing 399 n n C13 C14 YO9 doub 400 n y C09 C14 YO9 sing 401 n y C09 C15 YO9 sing 402 n n C14 N17 YO9 sing 403 n n N31 C26 YO9 trip 404 n n O28 C27 YO9 doub 405 n n C26 C23 YO9 sing 406 n n C24 C23 YO9 doub 407 n y C24 C25 YO9 sing 408 n y N17 C27 YO9 sing 409 n n N17 C02 YO9 sing 410 n n C27 N07 YO9 sing 411 n n C23 C22 YO9 sing 412 n y C25 C20 YO9 doub 413 n y C02 N03 YO9 doub 414 n y C02 C01 YO9 sing 415 n y N03 C04 YO9 sing 416 n y N07 C01 YO9 sing 417 n n C22 C21 YO9 doub 418 n y C20 C21 YO9 sing 419 n y C20 N08 YO9 sing 420 n n C01 C06 YO9 doub 421 n y C04 N08 YO9 sing 422 n n C04 N05 YO9 doub 423 n y C06 N05 YO9 sing 424 n y C06 H1 YO9 sing 425 n n C10 H2 YO9 sing 426 n n C12 H3 YO9 sing 427 n n C15 H4 YO9 sing 428 n n C15 H5 YO9 sing 429 n n C15 H6 YO9 sing 430 n n C16 H7 YO9 sing 431 n n C16 H8 YO9 sing 432 n n C16 H9 YO9 sing 433 n n C18 H10 YO9 sing 434 n n C19 H11 YO9 sing 435 n n C21 H12 YO9 sing 436 n n C22 H13 YO9 sing 437 n n C24 H14 YO9 sing 438 n n C25 H15 YO9 sing 439 n n N07 H16 YO9 sing 440 n n N08 H17 YO9 sing 441 n n # _atom_sites.entry_id 8FCC _atom_sites.fract_transf_matrix[1][1] 0.008326 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006461 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006465 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 YO9 A 1 601 1 YO9 YO9 . D 4 TLA A 1 602 1 TLA TLA . E 5 HOH A 1 701 86 HOH HOH . E 5 HOH A 2 702 14 HOH HOH . E 5 HOH A 3 703 42 HOH HOH . E 5 HOH A 4 704 7 HOH HOH . E 5 HOH A 5 705 45 HOH HOH . E 5 HOH A 6 706 110 HOH HOH . E 5 HOH A 7 707 26 HOH HOH . E 5 HOH A 8 708 55 HOH HOH . E 5 HOH A 9 709 6 HOH HOH . E 5 HOH A 10 710 19 HOH HOH . E 5 HOH A 11 711 40 HOH HOH . E 5 HOH A 12 712 8 HOH HOH . E 5 HOH A 13 713 28 HOH HOH . E 5 HOH A 14 714 46 HOH HOH . E 5 HOH A 15 715 10 HOH HOH . E 5 HOH A 16 716 84 HOH HOH . E 5 HOH A 17 717 57 HOH HOH . E 5 HOH A 18 718 59 HOH HOH . E 5 HOH A 19 719 88 HOH HOH . E 5 HOH A 20 720 18 HOH HOH . E 5 HOH A 21 721 15 HOH HOH . E 5 HOH A 22 722 5 HOH HOH . E 5 HOH A 23 723 29 HOH HOH . E 5 HOH A 24 724 43 HOH HOH . E 5 HOH A 25 725 49 HOH HOH . E 5 HOH A 26 726 60 HOH HOH . E 5 HOH A 27 727 23 HOH HOH . E 5 HOH A 28 728 9 HOH HOH . E 5 HOH A 29 729 89 HOH HOH . E 5 HOH A 30 730 44 HOH HOH . E 5 HOH A 31 731 85 HOH HOH . E 5 HOH A 32 732 56 HOH HOH . E 5 HOH A 33 733 16 HOH HOH . E 5 HOH A 34 734 79 HOH HOH . E 5 HOH A 35 735 50 HOH HOH . E 5 HOH A 36 736 91 HOH HOH . E 5 HOH A 37 737 11 HOH HOH . E 5 HOH A 38 738 87 HOH HOH . E 5 HOH A 39 739 54 HOH HOH . E 5 HOH A 40 740 83 HOH HOH . E 5 HOH A 41 741 22 HOH HOH . E 5 HOH A 42 742 92 HOH HOH . E 5 HOH A 43 743 80 HOH HOH . E 5 HOH A 44 744 25 HOH HOH . E 5 HOH A 45 745 90 HOH HOH . E 5 HOH A 46 746 58 HOH HOH . E 5 HOH A 47 747 52 HOH HOH . E 5 HOH A 48 748 82 HOH HOH . E 5 HOH A 49 749 31 HOH HOH . E 5 HOH A 50 750 53 HOH HOH . E 5 HOH A 51 751 105 HOH HOH . E 5 HOH A 52 752 48 HOH HOH . F 5 HOH B 1 501 107 HOH HOH . F 5 HOH B 2 502 66 HOH HOH . F 5 HOH B 3 503 64 HOH HOH . F 5 HOH B 4 504 94 HOH HOH . F 5 HOH B 5 505 37 HOH HOH . F 5 HOH B 6 506 78 HOH HOH . F 5 HOH B 7 507 30 HOH HOH . F 5 HOH B 8 508 81 HOH HOH . F 5 HOH B 9 509 34 HOH HOH . F 5 HOH B 10 510 1 HOH HOH . F 5 HOH B 11 511 17 HOH HOH . F 5 HOH B 12 512 69 HOH HOH . F 5 HOH B 13 513 47 HOH HOH . F 5 HOH B 14 514 27 HOH HOH . F 5 HOH B 15 515 70 HOH HOH . F 5 HOH B 16 516 73 HOH HOH . F 5 HOH B 17 517 51 HOH HOH . F 5 HOH B 18 518 4 HOH HOH . F 5 HOH B 19 519 38 HOH HOH . F 5 HOH B 20 520 13 HOH HOH . F 5 HOH B 21 521 63 HOH HOH . F 5 HOH B 22 522 75 HOH HOH . F 5 HOH B 23 523 24 HOH HOH . F 5 HOH B 24 524 104 HOH HOH . F 5 HOH B 25 525 76 HOH HOH . F 5 HOH B 26 526 68 HOH HOH . F 5 HOH B 27 527 20 HOH HOH . F 5 HOH B 28 528 71 HOH HOH . F 5 HOH B 29 529 2 HOH HOH . F 5 HOH B 30 530 95 HOH HOH . F 5 HOH B 31 531 67 HOH HOH . F 5 HOH B 32 532 32 HOH HOH . F 5 HOH B 33 533 3 HOH HOH . F 5 HOH B 34 534 96 HOH HOH . F 5 HOH B 35 535 62 HOH HOH . F 5 HOH B 36 536 12 HOH HOH . F 5 HOH B 37 537 97 HOH HOH . F 5 HOH B 38 538 41 HOH HOH . F 5 HOH B 39 539 99 HOH HOH . F 5 HOH B 40 540 106 HOH HOH . F 5 HOH B 41 541 109 HOH HOH . F 5 HOH B 42 542 108 HOH HOH . F 5 HOH B 43 543 77 HOH HOH . F 5 HOH B 44 544 33 HOH HOH . F 5 HOH B 45 545 74 HOH HOH . F 5 HOH B 46 546 100 HOH HOH . F 5 HOH B 47 547 65 HOH HOH . F 5 HOH B 48 548 35 HOH HOH . F 5 HOH B 49 549 72 HOH HOH . F 5 HOH B 50 550 36 HOH HOH . F 5 HOH B 51 551 98 HOH HOH . F 5 HOH B 52 552 103 HOH HOH . F 5 HOH B 53 553 102 HOH HOH . F 5 HOH B 54 554 101 HOH HOH . F 5 HOH B 55 555 61 HOH HOH . F 5 HOH B 56 556 21 HOH HOH . F 5 HOH B 57 557 39 HOH HOH . F 5 HOH B 58 558 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 YO9 . . . C 3 -12.457 -61.818 -14.344 1 41.74 ? C01 YO9 601 A 1 HETATM 2 C C02 YO9 . . . C 3 -11.849 -62.461 -15.352 1 43.52 ? C02 YO9 601 A 1 HETATM 3 C C04 YO9 . . . C 3 -10.013 -62.973 -14.035 1 42.59 ? C04 YO9 601 A 1 HETATM 4 C C06 YO9 . . . C 3 -11.787 -61.77 -13.112 1 42.57 ? C06 YO9 601 A 1 HETATM 5 C C09 YO9 . . . C 3 -12.026 -64.413 -17.881 1 54.29 ? C09 YO9 601 A 1 HETATM 6 C C10 YO9 . . . C 3 -11.507 -64.857 -19.11 1 50.81 ? C10 YO9 601 A 1 HETATM 7 C C11 YO9 . . . C 3 -11.159 -63.948 -20.125 1 54.01 ? C11 YO9 601 A 1 HETATM 8 C C12 YO9 . . . C 3 -11.308 -62.567 -19.93 1 46.2 ? C12 YO9 601 A 1 HETATM 9 C C13 YO9 . . . C 3 -11.815 -62.075 -18.726 1 52.57 ? C13 YO9 601 A 1 HETATM 10 C C14 YO9 . . . C 3 -12.186 -62.999 -17.69 1 47.72 ? C14 YO9 601 A 1 HETATM 11 C C15 YO9 . . . C 3 -12.385 -65.501 -16.849 1 56.08 ? C15 YO9 601 A 1 HETATM 12 C C16 YO9 . . . C 3 -11.945 -60.538 -18.61 1 49.89 ? C16 YO9 601 A 1 HETATM 13 C C18 YO9 . . . C 3 -10.644 -64.53 -21.369 1 54.64 ? C18 YO9 601 A 1 HETATM 14 C C19 YO9 . . . C 3 -10.143 -65.768 -21.426 1 61.23 ? C19 YO9 601 A 1 HETATM 15 C C20 YO9 . . . C 3 -8.127 -64.566 -14.664 1 46.06 ? C20 YO9 601 A 1 HETATM 16 C C21 YO9 . . . C 3 -7.011 -65.176 -14.109 1 43.68 ? C21 YO9 601 A 1 HETATM 17 C C22 YO9 . . . C 3 -6.384 -66.195 -14.808 1 47.57 ? C22 YO9 601 A 1 HETATM 18 C C23 YO9 . . . C 3 -6.855 -66.6 -16.052 1 50.55 ? C23 YO9 601 A 1 HETATM 19 C C24 YO9 . . . C 3 -7.951 -65.989 -16.616 1 46.24 ? C24 YO9 601 A 1 HETATM 20 C C25 YO9 . . . C 3 -8.578 -64.983 -15.912 1 48.7 ? C25 YO9 601 A 1 HETATM 21 C C26 YO9 . . . C 3 -6.21 -67.66 -16.781 1 56.28 ? C26 YO9 601 A 1 HETATM 22 C C27 YO9 . . . C 3 -13.769 -61.729 -16.206 1 53.86 ? C27 YO9 601 A 1 HETATM 23 C C29 YO9 . . . C 3 -9.686 -66.302 -22.654 1 66.67 ? C29 YO9 601 A 1 HETATM 24 N N03 YO9 . . . C 3 -10.644 -63.044 -15.232 1 43.08 ? N03 YO9 601 A 1 HETATM 25 N N05 YO9 . . . C 3 -10.54 -62.346 -12.935 1 45.44 ? N05 YO9 601 A 1 HETATM 26 N N07 YO9 . . . C 3 -13.633 -61.383 -14.893 1 45.71 ? N07 YO9 601 A 1 HETATM 27 N N08 YO9 . . . C 3 -8.757 -63.566 -13.933 1 40.8 ? N08 YO9 601 A 1 HETATM 28 N N17 YO9 . . . C 3 -12.637 -62.436 -16.48 1 45.56 ? N17 YO9 601 A 1 HETATM 29 N N30 YO9 . . . C 3 -9.352 -66.717 -23.673 1 77.72 ? N30 YO9 601 A 1 HETATM 30 N N31 YO9 . . . C 3 -5.691 -68.496 -17.363 1 60.93 ? N31 YO9 601 A 1 HETATM 31 O O28 YO9 . . . C 3 -14.746 -61.469 -16.932 1 59.62 ? O28 YO9 601 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #