data_8FCN # _model_server_result.job_id pXbKPS3oWcqCxYRPQHz1Ag _model_server_result.datetime_utc '2024-11-07 10:34:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fcn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":902}' # _entry.id 8FCN # _exptl.entry_id 8FCN _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FCN _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FCN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 8FCN _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 ADP F 1 901 801 ADP ADP . N 3 ADP F 1 902 802 ADP ADP . O 3 ADP E 1 901 801 ADP ADP . P 3 ADP E 1 902 802 ADP ADP . Q 3 ADP D 1 901 801 ADP ADP . R 3 ADP D 1 902 802 ADP ADP . S 3 ADP C 1 901 801 ADP ADP . T 3 ADP C 1 902 802 ADP ADP . U 3 ADP B 1 901 801 ADP ADP . V 3 ADP B 1 902 802 ADP ADP . W 3 ADP A 1 901 801 ADP ADP . X 3 ADP A 1 902 802 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . X 3 132.666 169.009 188.514 1 6.67 ? PB ADP 902 A 1 HETATM 2 O O1B ADP . . . X 3 133.309 168.175 187.436 1 6.67 ? O1B ADP 902 A 1 HETATM 3 O O2B ADP . . . X 3 133.36 168.92 189.845 1 6.67 ? O2B ADP 902 A 1 HETATM 4 O O3B ADP . . . X 3 132.301 170.406 188.091 1 6.67 ? O3B ADP 902 A 1 HETATM 5 P PA ADP . . . X 3 130.099 168.294 187.649 1 6.67 ? PA ADP 902 A 1 HETATM 6 O O1A ADP . . . X 3 130.601 167.492 186.478 1 6.67 ? O1A ADP 902 A 1 HETATM 7 O O2A ADP . . . X 3 129.604 169.702 187.467 1 6.67 ? O2A ADP 902 A 1 HETATM 8 O O3A ADP . . . X 3 131.25 168.293 188.773 1 6.67 ? O3A ADP 902 A 1 HETATM 9 O O5' ADP . . . X 3 128.928 167.442 188.338 1 6.67 ? O5' ADP 902 A 1 HETATM 10 C C5' ADP . . . X 3 129.078 166.032 188.472 1 6.67 ? C5' ADP 902 A 1 HETATM 11 C C4' ADP . . . X 3 127.717 165.375 188.643 1 6.67 ? C4' ADP 902 A 1 HETATM 12 O O4' ADP . . . X 3 127.148 165.741 189.899 1 6.67 ? O4' ADP 902 A 1 HETATM 13 C C3' ADP . . . X 3 126.749 165.835 187.565 1 6.67 ? C3' ADP 902 A 1 HETATM 14 O O3' ADP . . . X 3 126.549 164.803 186.598 1 6.67 ? O3' ADP 902 A 1 HETATM 15 C C2' ADP . . . X 3 125.453 166.12 188.285 1 6.67 ? C2' ADP 902 A 1 HETATM 16 O O2' ADP . . . X 3 124.497 165.113 187.949 1 6.67 ? O2' ADP 902 A 1 HETATM 17 C C1' ADP . . . X 3 125.765 166.058 189.769 1 6.67 ? C1' ADP 902 A 1 HETATM 18 N N9 ADP . . . X 3 125.544 167.395 190.366 1 6.67 ? N9 ADP 902 A 1 HETATM 19 C C8 ADP . . . X 3 126.46 168.087 191.06 1 6.67 ? C8 ADP 902 A 1 HETATM 20 N N7 ADP . . . X 3 125.964 169.276 191.481 1 6.67 ? N7 ADP 902 A 1 HETATM 21 C C5 ADP . . . X 3 124.695 169.355 191.05 1 6.67 ? C5 ADP 902 A 1 HETATM 22 C C6 ADP . . . X 3 123.602 170.344 191.145 1 6.67 ? C6 ADP 902 A 1 HETATM 23 N N6 ADP . . . X 3 123.77 171.515 191.805 1 6.67 ? N6 ADP 902 A 1 HETATM 24 N N1 ADP . . . X 3 122.428 170.038 190.558 1 6.67 ? N1 ADP 902 A 1 HETATM 25 C C2 ADP . . . X 3 122.247 168.88 189.901 1 6.67 ? C2 ADP 902 A 1 HETATM 26 N N3 ADP . . . X 3 123.196 167.942 189.775 1 6.67 ? N3 ADP 902 A 1 HETATM 27 C C4 ADP . . . X 3 124.419 168.112 190.318 1 6.67 ? C4 ADP 902 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 72 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #