data_8FCZ # _model_server_result.job_id kkQQ7A-i6qw7MPWElKRC2A _model_server_result.datetime_utc '2025-07-01 21:42:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fcz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":401}' # _entry.id 8FCZ # _exptl.entry_id 8FCZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8FCZ _cell.length_a 119.277 _cell.length_b 119.277 _cell.length_c 227.115 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FCZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 J N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 3 5 4 NAG MAN C1 O1 . O2 HO2 . sing 5 ? 3 6 3 MAN BMA C1 O1 . O6 HO6 . sing 6 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 7 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 8 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 9 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 10 ? 5 4 3 MAN BMA C1 O1 . O3 HO3 . sing 11 ? 5 5 3 MAN BMA C1 O1 . O6 HO6 . sing 12 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG A 331 NAG 3 n E NAG 2 E 2 NAG A 332 NAG 3 n E BMA 3 E 3 BMA A 340 BMA 3 n E MAN 4 E 4 MAN A 342 MAN 3 n E NAG 5 E 5 NAG A 343 NAG 3 n E MAN 6 E 6 MAN A 341 MAN 4 n F NAG 1 F 1 NAG A 337 NAG 4 n F NAG 2 F 2 NAG A 344 NAG 4 n F BMA 3 F 3 BMA A 345 BMA 5 n G NAG 1 G 1 NAG B 331 NAG 5 n G NAG 2 G 2 NAG B 332 NAG 5 n G BMA 3 G 3 BMA B 339 BMA 5 n G MAN 4 G 4 MAN B 341 MAN 5 n G MAN 5 G 5 MAN B 340 MAN 6 n H NAG 1 H 1 NAG B 337 NAG 6 n H NAG 2 H 2 NAG B 342 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 187 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 110 B CYS 110 1_555 B SG CYS 187 B CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 D SG CYS 22 D CYS 22 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 2 A ASN 2 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 15 A ASN 15 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 A NZ LYS 296 A LYS 296 1_555 I C15 RET . A RET 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.269 ? covale ? covale4 B ND2 ASN 2 B ASN 2 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale5 B ND2 ASN 15 B ASN 15 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale6 B NZ LYS 296 B LYS 296 1_555 J C15 RET . B RET 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.267 ? covale ? covale7 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale8 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale9 E O3 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale10 E O6 BMA . E BMA 3 1_555 E C1 MAN . E MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale11 E O2 MAN . E MAN 4 1_555 E C1 NAG . E NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale12 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale13 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale14 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale15 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale16 G O3 BMA . G BMA 3 1_555 G C1 MAN . G MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale17 G O6 BMA . G BMA 3 1_555 G C1 MAN . G MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale18 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 353 n n C1 C6 RET sing 354 n n C1 C16 RET sing 355 n n C1 C17 RET sing 356 n n C2 C3 RET sing 357 n n C2 H21 RET sing 358 n n C2 H22 RET sing 359 n n C3 C4 RET sing 360 n n C3 H31 RET sing 361 n n C3 H32 RET sing 362 n n C4 C5 RET sing 363 n n C4 H41 RET sing 364 n n C4 H42 RET sing 365 n n C5 C6 RET doub 366 n n C5 C18 RET sing 367 n n C6 C7 RET sing 368 n n C7 C8 RET doub 369 e n C7 H7 RET sing 370 n n C8 C9 RET sing 371 n n C8 H8 RET sing 372 n n C9 C10 RET doub 373 e n C9 C19 RET sing 374 n n C10 C11 RET sing 375 n n C10 H10 RET sing 376 n n C11 C12 RET doub 377 e n C11 H11 RET sing 378 n n C12 C13 RET sing 379 n n C12 H12 RET sing 380 n n C13 C14 RET doub 381 e n C13 C20 RET sing 382 n n C14 C15 RET sing 383 n n C14 H14 RET sing 384 n n C15 O1 RET doub 385 n n C15 H15 RET sing 386 n n C16 H161 RET sing 387 n n C16 H162 RET sing 388 n n C16 H163 RET sing 389 n n C17 H171 RET sing 390 n n C17 H172 RET sing 391 n n C17 H173 RET sing 392 n n C18 H181 RET sing 393 n n C18 H182 RET sing 394 n n C18 H183 RET sing 395 n n C19 H191 RET sing 396 n n C19 H192 RET sing 397 n n C19 H193 RET sing 398 n n C20 H201 RET sing 399 n n C20 H202 RET sing 400 n n C20 H203 RET sing 401 n n # _atom_sites.entry_id 8FCZ _atom_sites.fract_transf_matrix[1][1] 0.008384 _atom_sites.fract_transf_matrix[1][2] 0.00484 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009681 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 7 RET A 1 401 346 RET RET . J 7 RET B 1 401 346 RET RET . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . J 7 59.195 -6.797 -7.556 1 202.53 ? C1 RET 401 B 1 HETATM 2 C C2 RET . . . J 7 57.764 -6.254 -7.644 1 203.87 ? C2 RET 401 B 1 HETATM 3 C C3 RET . . . J 7 56.766 -7.022 -6.843 1 206.34 ? C3 RET 401 B 1 HETATM 4 C C4 RET . . . J 7 57.204 -7.194 -5.397 1 207.18 ? C4 RET 401 B 1 HETATM 5 C C5 RET . . . J 7 58.658 -7.538 -5.24 1 206.32 ? C5 RET 401 B 1 HETATM 6 C C6 RET . . . J 7 59.589 -7.114 -6.122 1 205.15 ? C6 RET 401 B 1 HETATM 7 C C7 RET . . . J 7 60.985 -7.066 -5.759 1 208.32 ? C7 RET 401 B 1 HETATM 8 C C8 RET . . . J 7 61.478 -6.904 -4.504 1 207.59 ? C8 RET 401 B 1 HETATM 9 C C9 RET . . . J 7 62.654 -7.377 -3.934 1 203.84 ? C9 RET 401 B 1 HETATM 10 C C10 RET . . . J 7 62.975 -6.95 -2.629 1 202.89 ? C10 RET 401 B 1 HETATM 11 C C11 RET . . . J 7 64.048 -7.261 -1.814 1 203.72 ? C11 RET 401 B 1 HETATM 12 C C12 RET . . . J 7 64.432 -6.678 -0.611 1 202.38 ? C12 RET 401 B 1 HETATM 13 C C13 RET . . . J 7 64.006 -5.48 0.027 1 198.72 ? C13 RET 401 B 1 HETATM 14 C C14 RET . . . J 7 64.411 -5.2 1.335 1 196.98 ? C14 RET 401 B 1 HETATM 15 C C15 RET . . . J 7 64.038 -4.026 2.144 1 193.39 ? C15 RET 401 B 1 HETATM 16 C C16 RET . . . J 7 59.307 -8.059 -8.427 1 202.52 ? C16 RET 401 B 1 HETATM 17 C C17 RET . . . J 7 60.12 -5.72 -8.147 1 200.59 ? C17 RET 401 B 1 HETATM 18 C C18 RET . . . J 7 58.947 -8.313 -3.982 1 206.61 ? C18 RET 401 B 1 HETATM 19 C C19 RET . . . J 7 63.587 -8.291 -4.642 1 202.24 ? C19 RET 401 B 1 HETATM 20 C C20 RET . . . J 7 63.184 -4.513 -0.75 1 197.65 ? C20 RET 401 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #