data_8FD7 # _model_server_result.job_id AMqbHIpaWlNH2Z8rhz4SAA _model_server_result.datetime_utc '2024-11-04 22:34:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fd7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":1703}' # _entry.id 8FD7 # _exptl.entry_id 8FD7 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FD7 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FD7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 R N N ? 11 S N N ? 11 T N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 F 1 NAG F 2 NAG 4 n D NAG 2 F 2 NAG F 1 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 305 D CYS 305 1_555 A SG CYS 1046 D CYS 1046 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 356 D CYS 356 1_555 A SG CYS 1061 D CYS 1061 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 406 D CYS 406 1_555 A SG CYS 1073 D CYS 1073 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 669 D CYS 669 1_555 A SG CYS 699 D CYS 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 906 D CYS 906 1_555 A SG CYS 976 D CYS 976 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 A SG CYS 998 D CYS 998 1_555 A SG CYS 1028 D CYS 1028 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 A SG CYS 1001 D CYS 1001 1_555 A SG CYS 1026 D CYS 1026 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 B SG CYS 316 K CYS 316 1_555 B SG CYS 332 K CYS 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 B SG CYS 1058 K CYS 1058 1_555 B SG CYS 1069 K CYS 1069 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf10 B SG CYS 1431 K CYS 1431 1_555 B SG CYS 1447 K CYS 1447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 94 D ASN 94 1_555 G C1 NAG . D NAG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 470 D ASN 470 1_555 H C1 NAG . D NAG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 D O4 NAG . F NAG 1 1_555 D C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 A OG SER 263 D SER 263 1_555 N CA CA . D CA 1210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? metalc ? metalc2 A OG SER 265 D SER 265 1_555 N CA CA . D CA 1210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc3 A OG1 THR 333 D THR 333 1_555 N CA CA . D CA 1210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc4 A O TRP 448 D TRP 448 1_555 O NA NA . D NA 1211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? metalc ? metalc5 B OE1 GLU 363 K GLU 363 1_555 V CA CA . K CA 1707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc6 B OE2 GLU 363 K GLU 363 1_555 V CA CA . K CA 1707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.185 ? metalc ? metalc7 B OE2 GLU 1115 K GLU 1115 1_555 V CA CA . K CA 1707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.048 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 8FD7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG D 1 1201 1103 NAG NAG . F 6 GBN D 1 1202 1116 GBN GBN . G 5 NAG D 1 1203 1117 NAG NAG . H 5 NAG D 1 1204 1118 NAG NAG . I 5 NAG D 1 1205 1119 NAG NAG . J 5 NAG D 1 1206 1120 NAG NAG . K 5 NAG D 1 1207 3 NAG NAG . L 5 NAG D 1 1208 4 NAG NAG . M 5 NAG D 1 1209 5 NAG NAG . N 7 CA D 1 1210 1 CA CA . O 8 NA D 1 1211 1 NA NA . P 9 WO9 K 1 1701 1710 WO9 WO9 . Q 10 YSW K 1 1702 1711 YSW WNZ . R 11 CLR K 1 1703 1712 CLR CLR . S 11 CLR K 1 1704 1713 CLR CLR . T 11 CLR K 1 1705 1714 CLR CLR . U 7 CA K 1 1706 3 CA CA . V 7 CA K 1 1707 4 CA CA . W 12 HOH K 1 1801 1 HOH HOH . W 12 HOH K 2 1802 3 HOH HOH . W 12 HOH K 3 1803 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . R 11 172.247 223.476 186.915 1 20 ? C1 CLR 1703 K 1 HETATM 2 C C2 CLR . . . R 11 171.447 223.699 188.217 1 20 ? C2 CLR 1703 K 1 HETATM 3 C C3 CLR . . . R 11 172.387 224.123 189.356 1 20 ? C3 CLR 1703 K 1 HETATM 4 C C4 CLR . . . R 11 173.139 225.41 188.972 1 20 ? C4 CLR 1703 K 1 HETATM 5 C C5 CLR . . . R 11 173.901 225.263 187.662 1 20 ? C5 CLR 1703 K 1 HETATM 6 C C6 CLR . . . R 11 175.191 225.619 187.592 1 20 ? C6 CLR 1703 K 1 HETATM 7 C C7 CLR . . . R 11 176.055 225.523 186.357 1 20 ? C7 CLR 1703 K 1 HETATM 8 C C8 CLR . . . R 11 175.248 225.24 185.068 1 20 ? C8 CLR 1703 K 1 HETATM 9 C C9 CLR . . . R 11 174.115 224.206 185.349 1 20 ? C9 CLR 1703 K 1 HETATM 10 C C10 CLR . . . R 11 173.112 224.698 186.465 1 20 ? C10 CLR 1703 K 1 HETATM 11 C C11 CLR . . . R 11 173.434 223.702 184.032 1 20 ? C11 CLR 1703 K 1 HETATM 12 C C12 CLR . . . R 11 174.448 223.243 182.946 1 20 ? C12 CLR 1703 K 1 HETATM 13 C C13 CLR . . . R 11 175.501 224.342 182.618 1 20 ? C13 CLR 1703 K 1 HETATM 14 C C14 CLR . . . R 11 176.187 224.692 183.963 1 20 ? C14 CLR 1703 K 1 HETATM 15 C C15 CLR . . . R 11 177.413 225.527 183.582 1 20 ? C15 CLR 1703 K 1 HETATM 16 C C16 CLR . . . R 11 177.873 224.881 182.26 1 20 ? C16 CLR 1703 K 1 HETATM 17 C C17 CLR . . . R 11 176.76 223.888 181.798 1 20 ? C17 CLR 1703 K 1 HETATM 18 C C18 CLR . . . R 11 174.821 225.575 181.939 1 20 ? C18 CLR 1703 K 1 HETATM 19 C C19 CLR . . . R 11 172.18 225.828 185.935 1 20 ? C19 CLR 1703 K 1 HETATM 20 C C20 CLR . . . R 11 176.692 223.76 180.234 1 20 ? C20 CLR 1703 K 1 HETATM 21 C C21 CLR . . . R 11 175.924 222.501 179.754 1 20 ? C21 CLR 1703 K 1 HETATM 22 C C22 CLR . . . R 11 178.139 223.771 179.647 1 20 ? C22 CLR 1703 K 1 HETATM 23 C C23 CLR . . . R 11 178.277 223.336 178.166 1 20 ? C23 CLR 1703 K 1 HETATM 24 C C24 CLR . . . R 11 177.727 224.42 177.208 1 20 ? C24 CLR 1703 K 1 HETATM 25 C C25 CLR . . . R 11 178.03 224.158 175.709 1 20 ? C25 CLR 1703 K 1 HETATM 26 C C26 CLR . . . R 11 177.778 222.689 175.296 1 20 ? C26 CLR 1703 K 1 HETATM 27 C C27 CLR . . . R 11 179.483 224.57 175.376 1 20 ? C27 CLR 1703 K 1 HETATM 28 O O1 CLR . . . R 11 171.627 224.338 190.542 1 20 ? O1 CLR 1703 K 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #