data_8FDM # _model_server_result.job_id 6Qc8xRt-mwqquhZ5OPmImQ _model_server_result.datetime_utc '2024-11-16 22:29:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fdm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":202}' # _entry.id 8FDM # _exptl.entry_id 8FDM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 45.041 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NITROSOMETHANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FDM _cell.length_a 53.458 _cell.length_b 53.458 _cell.length_c 191.375 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FDM _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall 'P 4w' _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 E FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc2 E FE HEM . A HEM 201 1_555 S O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 J FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc4 J FE HEM . B HEM 201 1_555 K O1 NSM . B NSM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc5 J FE HEM . B HEM 201 1_555 K N NSM . B NSM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc6 C NE2 HIS 87 C HIS 87 1_555 M FE HEM . C HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc7 M FE HEM . C HEM 201 1_555 U O HOH . C HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc8 D NE2 HIS 92 D HIS 92 1_555 Q FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc9 Q FE HEM . D HEM 201 1_555 R O1 NSM . D NSM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc10 Q FE HEM . D HEM 201 1_555 R N NSM . D NSM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? # _chem_comp.formula 'C H3 N O' _chem_comp.formula_weight 45.041 _chem_comp.id NSM _chem_comp.mon_nstd_flag . _chem_comp.name NITROSOMETHANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 N NSM doub 326 n n N C1 NSM sing 327 n n C1 H11 NSM sing 328 n n C1 H12 NSM sing 329 n n C1 H13 NSM sing 330 n n # _atom_sites.entry_id 8FDM _atom_sites.fract_transf_matrix[1][1] 0.018706 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005225 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HEM A 1 201 201 HEM HEM . F 4 GOL A 1 202 301 GOL GOL . G 4 GOL A 1 203 401 GOL GOL . H 5 MBN A 1 204 501 MBN MBN . I 4 GOL A 1 205 301 GOL GOL . J 3 HEM B 1 201 201 HEM HEM . K 6 NSM B 1 202 301 NSM NSM . L 4 GOL B 1 203 401 GOL GOL . M 3 HEM C 1 201 201 HEM HEM . N 4 GOL C 1 202 301 GOL GOL . O 5 MBN C 1 203 401 MBN MBN . P 7 PO4 C 1 204 401 PO4 PO4 . Q 3 HEM D 1 201 201 HEM HEM . R 6 NSM D 1 202 301 NSM NSM . S 8 HOH A 1 301 234 HOH HOH . S 8 HOH A 2 302 245 HOH HOH . S 8 HOH A 3 303 196 HOH HOH . S 8 HOH A 4 304 184 HOH HOH . S 8 HOH A 5 305 73 HOH HOH . S 8 HOH A 6 306 206 HOH HOH . S 8 HOH A 7 307 22 HOH HOH . S 8 HOH A 8 308 14 HOH HOH . S 8 HOH A 9 309 141 HOH HOH . S 8 HOH A 10 310 54 HOH HOH . S 8 HOH A 11 311 222 HOH HOH . S 8 HOH A 12 312 1 HOH HOH . S 8 HOH A 13 313 133 HOH HOH . S 8 HOH A 14 314 77 HOH HOH . S 8 HOH A 15 315 213 HOH HOH . S 8 HOH A 16 316 98 HOH HOH . S 8 HOH A 17 317 17 HOH HOH . S 8 HOH A 18 318 132 HOH HOH . S 8 HOH A 19 319 162 HOH HOH . S 8 HOH A 20 320 95 HOH HOH . S 8 HOH A 21 321 11 HOH HOH . S 8 HOH A 22 322 90 HOH HOH . S 8 HOH A 23 323 104 HOH HOH . S 8 HOH A 24 324 91 HOH HOH . S 8 HOH A 25 325 163 HOH HOH . S 8 HOH A 26 326 70 HOH HOH . S 8 HOH A 27 327 114 HOH HOH . S 8 HOH A 28 328 20 HOH HOH . S 8 HOH A 29 329 49 HOH HOH . S 8 HOH A 30 330 64 HOH HOH . S 8 HOH A 31 331 33 HOH HOH . S 8 HOH A 32 332 81 HOH HOH . S 8 HOH A 33 333 108 HOH HOH . S 8 HOH A 34 334 32 HOH HOH . S 8 HOH A 35 335 142 HOH HOH . S 8 HOH A 36 336 35 HOH HOH . S 8 HOH A 37 337 59 HOH HOH . S 8 HOH A 38 338 111 HOH HOH . S 8 HOH A 39 339 65 HOH HOH . S 8 HOH A 40 340 27 HOH HOH . S 8 HOH A 41 341 193 HOH HOH . S 8 HOH A 42 342 96 HOH HOH . S 8 HOH A 43 343 150 HOH HOH . S 8 HOH A 44 344 43 HOH HOH . S 8 HOH A 45 345 136 HOH HOH . S 8 HOH A 46 346 146 HOH HOH . S 8 HOH A 47 347 189 HOH HOH . S 8 HOH A 48 348 223 HOH HOH . S 8 HOH A 49 349 230 HOH HOH . S 8 HOH A 50 350 231 HOH HOH . S 8 HOH A 51 351 202 HOH HOH . S 8 HOH A 52 352 229 HOH HOH . S 8 HOH A 53 353 109 HOH HOH . S 8 HOH A 54 354 232 HOH HOH . S 8 HOH A 55 355 216 HOH HOH . S 8 HOH A 56 356 122 HOH HOH . S 8 HOH A 57 357 135 HOH HOH . S 8 HOH A 58 358 235 HOH HOH . T 8 HOH B 1 301 215 HOH HOH . T 8 HOH B 2 302 221 HOH HOH . T 8 HOH B 3 303 199 HOH HOH . T 8 HOH B 4 304 125 HOH HOH . T 8 HOH B 5 305 29 HOH HOH . T 8 HOH B 6 306 118 HOH HOH . T 8 HOH B 7 307 99 HOH HOH . T 8 HOH B 8 308 113 HOH HOH . T 8 HOH B 9 309 226 HOH HOH . T 8 HOH B 10 310 173 HOH HOH . T 8 HOH B 11 311 243 HOH HOH . T 8 HOH B 12 312 126 HOH HOH . T 8 HOH B 13 313 7 HOH HOH . T 8 HOH B 14 314 97 HOH HOH . T 8 HOH B 15 315 155 HOH HOH . T 8 HOH B 16 316 75 HOH HOH . T 8 HOH B 17 317 86 HOH HOH . T 8 HOH B 18 318 57 HOH HOH . T 8 HOH B 19 319 167 HOH HOH . T 8 HOH B 20 320 8 HOH HOH . T 8 HOH B 21 321 151 HOH HOH . T 8 HOH B 22 322 225 HOH HOH . T 8 HOH B 23 323 116 HOH HOH . T 8 HOH B 24 324 152 HOH HOH . T 8 HOH B 25 325 56 HOH HOH . T 8 HOH B 26 326 100 HOH HOH . T 8 HOH B 27 327 44 HOH HOH . T 8 HOH B 28 328 170 HOH HOH . T 8 HOH B 29 329 55 HOH HOH . T 8 HOH B 30 330 148 HOH HOH . T 8 HOH B 31 331 37 HOH HOH . T 8 HOH B 32 332 105 HOH HOH . T 8 HOH B 33 333 205 HOH HOH . T 8 HOH B 34 334 48 HOH HOH . T 8 HOH B 35 335 115 HOH HOH . T 8 HOH B 36 336 179 HOH HOH . T 8 HOH B 37 337 112 HOH HOH . T 8 HOH B 38 338 201 HOH HOH . T 8 HOH B 39 339 145 HOH HOH . T 8 HOH B 40 340 210 HOH HOH . T 8 HOH B 41 341 30 HOH HOH . T 8 HOH B 42 342 227 HOH HOH . T 8 HOH B 43 343 144 HOH HOH . U 8 HOH C 1 301 246 HOH HOH . U 8 HOH C 2 302 192 HOH HOH . U 8 HOH C 3 303 214 HOH HOH . U 8 HOH C 4 304 238 HOH HOH . U 8 HOH C 5 305 203 HOH HOH . U 8 HOH C 6 306 244 HOH HOH . U 8 HOH C 7 307 219 HOH HOH . U 8 HOH C 8 308 41 HOH HOH . U 8 HOH C 9 309 217 HOH HOH . U 8 HOH C 10 310 120 HOH HOH . U 8 HOH C 11 311 53 HOH HOH . U 8 HOH C 12 312 94 HOH HOH . U 8 HOH C 13 313 26 HOH HOH . U 8 HOH C 14 314 87 HOH HOH . U 8 HOH C 15 315 24 HOH HOH . U 8 HOH C 16 316 67 HOH HOH . U 8 HOH C 17 317 143 HOH HOH . U 8 HOH C 18 318 76 HOH HOH . U 8 HOH C 19 319 31 HOH HOH . U 8 HOH C 20 320 124 HOH HOH . U 8 HOH C 21 321 84 HOH HOH . U 8 HOH C 22 322 52 HOH HOH . U 8 HOH C 23 323 69 HOH HOH . U 8 HOH C 24 324 127 HOH HOH . U 8 HOH C 25 325 2 HOH HOH . U 8 HOH C 26 326 9 HOH HOH . U 8 HOH C 27 327 181 HOH HOH . U 8 HOH C 28 328 39 HOH HOH . U 8 HOH C 29 329 139 HOH HOH . U 8 HOH C 30 330 15 HOH HOH . U 8 HOH C 31 331 80 HOH HOH . U 8 HOH C 32 332 161 HOH HOH . U 8 HOH C 33 333 102 HOH HOH . U 8 HOH C 34 334 79 HOH HOH . U 8 HOH C 35 335 240 HOH HOH . U 8 HOH C 36 336 63 HOH HOH . U 8 HOH C 37 337 85 HOH HOH . U 8 HOH C 38 338 28 HOH HOH . U 8 HOH C 39 339 175 HOH HOH . U 8 HOH C 40 340 18 HOH HOH . U 8 HOH C 41 341 88 HOH HOH . U 8 HOH C 42 342 78 HOH HOH . U 8 HOH C 43 343 71 HOH HOH . U 8 HOH C 44 344 42 HOH HOH . U 8 HOH C 45 345 147 HOH HOH . U 8 HOH C 46 346 13 HOH HOH . U 8 HOH C 47 347 25 HOH HOH . U 8 HOH C 48 348 68 HOH HOH . U 8 HOH C 49 349 130 HOH HOH . U 8 HOH C 50 350 190 HOH HOH . U 8 HOH C 51 351 241 HOH HOH . U 8 HOH C 52 352 123 HOH HOH . U 8 HOH C 53 353 89 HOH HOH . U 8 HOH C 54 354 228 HOH HOH . U 8 HOH C 55 355 242 HOH HOH . V 8 HOH D 1 301 101 HOH HOH . V 8 HOH D 2 302 236 HOH HOH . V 8 HOH D 3 303 165 HOH HOH . V 8 HOH D 4 304 21 HOH HOH . V 8 HOH D 5 305 121 HOH HOH . V 8 HOH D 6 306 10 HOH HOH . V 8 HOH D 7 307 74 HOH HOH . V 8 HOH D 8 308 5 HOH HOH . V 8 HOH D 9 309 157 HOH HOH . V 8 HOH D 10 310 58 HOH HOH . V 8 HOH D 11 311 34 HOH HOH . V 8 HOH D 12 312 47 HOH HOH . V 8 HOH D 13 313 103 HOH HOH . V 8 HOH D 14 314 45 HOH HOH . V 8 HOH D 15 315 117 HOH HOH . V 8 HOH D 16 316 61 HOH HOH . V 8 HOH D 17 317 93 HOH HOH . V 8 HOH D 18 318 138 HOH HOH . V 8 HOH D 19 319 40 HOH HOH . V 8 HOH D 20 320 46 HOH HOH . V 8 HOH D 21 321 134 HOH HOH . V 8 HOH D 22 322 83 HOH HOH . V 8 HOH D 23 323 239 HOH HOH . V 8 HOH D 24 324 50 HOH HOH . V 8 HOH D 25 325 110 HOH HOH . V 8 HOH D 26 326 220 HOH HOH . V 8 HOH D 27 327 207 HOH HOH . V 8 HOH D 28 328 224 HOH HOH . V 8 HOH D 29 329 191 HOH HOH . V 8 HOH D 30 330 209 HOH HOH . V 8 HOH D 31 331 60 HOH HOH . V 8 HOH D 32 332 218 HOH HOH . V 8 HOH D 33 333 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 NSM . . . K 6 9.193 9.686 1.06 1 34.74 ? O1 NSM 202 B 1 HETATM 2 N N NSM . . . K 6 10.013 8.835 1.209 1 34.23 ? N NSM 202 B 1 HETATM 3 C C1 NSM . . . K 6 11.115 9.219 2.084 1 29.77 ? C1 NSM 202 B 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 3 #