data_8FDN
#
_model_server_result.job_id            m72_m8g217na8JOXU4TyGA 
_model_server_result.datetime_utc      '2024-11-04 20:18:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8fdn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":203}' 
#
_entry.id    8FDN 
#
_exptl.entry_id    8FDN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8FDN 
_cell.length_a            53.262 
_cell.length_b            53.262 
_cell.length_c            192.545 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8FDN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    'P 4w' 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 L N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 F FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc2 F FE HEM . A HEM 302 1_555 Q O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 H FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc4 C NE2 HIS 87 C HIS 87 1_555 J FE HEM . C HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc5 J FE HEM . C HEM 201 1_555 S O HOH . C HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc6 D NE2 HIS 63 D HIS 63 1_555 O FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
metalc ? metalc7 D NE2 HIS 92 D HIS 92 1_555 O FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8FDN 
_atom_sites.fract_transf_matrix[1][1]    0.018775 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018775 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005194 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL A 1 301 301 GOL GOL . 
F 4 HEM A 1 302 302 HEM HEM . 
G 3 GOL A 1 303 303 GOL GOL . 
H 4 HEM B 1 201 201 HEM HEM . 
I 5 XQZ B 1 202 202 XQZ XQZ . 
J 4 HEM C 1 201 201 HEM HEM . 
K 5 XQZ C 1 202 202 XQZ XQZ . 
L 3 GOL C 1 203 203 GOL GOL . 
M 3 GOL C 1 204 204 GOL GOL . 
N 5 XQZ C 1 205 205 XQZ XQZ . 
O 4 HEM D 1 201 201 HEM HEM . 
P 5 XQZ D 1 202 202 XQZ XQZ . 
Q 6 HOH A 1 401 401 HOH HOH . 
Q 6 HOH A 2 402 402 HOH HOH . 
Q 6 HOH A 3 403 403 HOH HOH . 
Q 6 HOH A 4 404 404 HOH HOH . 
Q 6 HOH A 5 405 405 HOH HOH . 
Q 6 HOH A 6 406 406 HOH HOH . 
Q 6 HOH A 7 407 407 HOH HOH . 
Q 6 HOH A 8 408 408 HOH HOH . 
Q 6 HOH A 9 409 409 HOH HOH . 
Q 6 HOH A 10 410 410 HOH HOH . 
Q 6 HOH A 11 411 411 HOH HOH . 
Q 6 HOH A 12 412 412 HOH HOH . 
Q 6 HOH A 13 413 413 HOH HOH . 
Q 6 HOH A 14 414 414 HOH HOH . 
Q 6 HOH A 15 415 415 HOH HOH . 
Q 6 HOH A 16 416 416 HOH HOH . 
Q 6 HOH A 17 417 417 HOH HOH . 
Q 6 HOH A 18 418 418 HOH HOH . 
Q 6 HOH A 19 419 419 HOH HOH . 
Q 6 HOH A 20 420 420 HOH HOH . 
Q 6 HOH A 21 421 421 HOH HOH . 
Q 6 HOH A 22 422 422 HOH HOH . 
Q 6 HOH A 23 423 423 HOH HOH . 
Q 6 HOH A 24 424 424 HOH HOH . 
Q 6 HOH A 25 425 425 HOH HOH . 
Q 6 HOH A 26 426 426 HOH HOH . 
R 6 HOH B 1 301 301 HOH HOH . 
R 6 HOH B 2 302 302 HOH HOH . 
R 6 HOH B 3 303 303 HOH HOH . 
R 6 HOH B 4 304 304 HOH HOH . 
R 6 HOH B 5 305 305 HOH HOH . 
R 6 HOH B 6 306 306 HOH HOH . 
R 6 HOH B 7 307 307 HOH HOH . 
R 6 HOH B 8 308 308 HOH HOH . 
R 6 HOH B 9 309 309 HOH HOH . 
R 6 HOH B 10 310 310 HOH HOH . 
R 6 HOH B 11 311 311 HOH HOH . 
R 6 HOH B 12 312 312 HOH HOH . 
R 6 HOH B 13 313 313 HOH HOH . 
R 6 HOH B 14 314 314 HOH HOH . 
R 6 HOH B 15 315 315 HOH HOH . 
R 6 HOH B 16 316 316 HOH HOH . 
R 6 HOH B 17 317 317 HOH HOH . 
R 6 HOH B 18 318 318 HOH HOH . 
R 6 HOH B 19 319 319 HOH HOH . 
R 6 HOH B 20 320 320 HOH HOH . 
R 6 HOH B 21 321 321 HOH HOH . 
R 6 HOH B 22 322 322 HOH HOH . 
R 6 HOH B 23 323 323 HOH HOH . 
S 6 HOH C 1 301 301 HOH HOH . 
S 6 HOH C 2 302 302 HOH HOH . 
S 6 HOH C 3 303 303 HOH HOH . 
S 6 HOH C 4 304 304 HOH HOH . 
S 6 HOH C 5 305 305 HOH HOH . 
S 6 HOH C 6 306 306 HOH HOH . 
S 6 HOH C 7 307 307 HOH HOH . 
S 6 HOH C 8 308 308 HOH HOH . 
S 6 HOH C 9 309 309 HOH HOH . 
S 6 HOH C 10 310 310 HOH HOH . 
S 6 HOH C 11 311 311 HOH HOH . 
S 6 HOH C 12 312 312 HOH HOH . 
S 6 HOH C 13 313 313 HOH HOH . 
S 6 HOH C 14 314 314 HOH HOH . 
S 6 HOH C 15 315 315 HOH HOH . 
S 6 HOH C 16 316 316 HOH HOH . 
S 6 HOH C 17 317 317 HOH HOH . 
S 6 HOH C 18 318 318 HOH HOH . 
S 6 HOH C 19 319 319 HOH HOH . 
S 6 HOH C 20 320 320 HOH HOH . 
S 6 HOH C 21 321 321 HOH HOH . 
S 6 HOH C 22 322 322 HOH HOH . 
S 6 HOH C 23 323 323 HOH HOH . 
S 6 HOH C 24 324 324 HOH HOH . 
S 6 HOH C 25 325 325 HOH HOH . 
S 6 HOH C 26 326 326 HOH HOH . 
S 6 HOH C 27 327 327 HOH HOH . 
S 6 HOH C 28 328 328 HOH HOH . 
S 6 HOH C 29 329 329 HOH HOH . 
S 6 HOH C 30 330 330 HOH HOH . 
T 6 HOH D 1 302 302 HOH HOH . 
T 6 HOH D 2 303 303 HOH HOH . 
T 6 HOH D 3 304 304 HOH HOH . 
T 6 HOH D 4 305 305 HOH HOH . 
T 6 HOH D 5 306 306 HOH HOH . 
T 6 HOH D 6 307 307 HOH HOH . 
T 6 HOH D 7 308 308 HOH HOH . 
T 6 HOH D 8 309 309 HOH HOH . 
T 6 HOH D 9 310 310 HOH HOH . 
T 6 HOH D 10 311 311 HOH HOH . 
T 6 HOH D 11 312 312 HOH HOH . 
T 6 HOH D 12 313 313 HOH HOH . 
T 6 HOH D 13 314 314 HOH HOH . 
T 6 HOH D 14 315 315 HOH HOH . 
T 6 HOH D 15 316 316 HOH HOH . 
T 6 HOH D 16 317 317 HOH HOH . 
T 6 HOH D 17 318 318 HOH HOH . 
T 6 HOH D 18 319 319 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . L 3 14.646 1.772 -30.625 1 57.68 ? C1 GOL 203 C 1 
HETATM 2 O O1 GOL . . . L 3 14.934 0.473 -30.079 1 46.9 ? O1 GOL 203 C 1 
HETATM 3 C C2 GOL . . . L 3 14.465 2.741 -29.43 1 56.45 ? C2 GOL 203 C 1 
HETATM 4 O O2 GOL . . . L 3 13.081 2.811 -29.031 1 59.54 ? O2 GOL 203 C 1 
HETATM 5 C C3 GOL . . . L 3 14.957 4.183 -29.863 1 72.68 ? C3 GOL 203 C 1 
HETATM 6 O O3 GOL . . . L 3 16.377 4.225 -29.878 1 60 ? O3 GOL 203 C 1 
HETATM 7 H H11 GOL . . . L 3 13.841 1.778 -31.166 1 69.15 ? H11 GOL 203 C 1 
HETATM 8 H H12 GOL . . . L 3 15.355 2.101 -31.199 1 69.15 ? H12 GOL 203 C 1 
HETATM 9 H HO1 GOL . . . L 3 15.048 -0.056 -30.735 1 56.22 ? HO1 GOL 203 C 1 
HETATM 10 H H2 GOL . . . L 3 15.007 2.411 -28.697 1 67.68 ? H2 GOL 203 C 1 
HETATM 11 H HO2 GOL . . . L 3 13.052 2.783 -28.199 1 71.39 ? HO2 GOL 203 C 1 
HETATM 12 H H31 GOL . . . L 3 14.569 4.828 -29.251 1 87.16 ? H31 GOL 203 C 1 
HETATM 13 H H32 GOL . . . L 3 14.567 4.385 -30.728 1 87.16 ? H32 GOL 203 C 1 
HETATM 14 H HO3 GOL . . . L 3 16.607 4.599 -30.61 1 71.94 ? HO3 GOL 203 C 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           241 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           14 
#