data_8FDQ # _model_server_result.job_id 2qgOCJPxqdJWLV38j_Xkrg _model_server_result.datetime_utc '2024-10-20 03:31:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fdq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 8FDQ # _exptl.entry_id 8FDQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FDQ _cell.length_a 24.38 _cell.length_b 38.98 _cell.length_c 60.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FDQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O HOH . B HOH 206 1_555 D MG MG . C MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc2 D MG MG . C MG 101 1_555 F O HOH . C HOH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc3 D MG MG . C MG 101 1_555 F O HOH . C HOH 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc4 D MG MG . C MG 101 1_555 F O HOH . C HOH 211 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc5 D MG MG . C MG 101 1_555 F O HOH . C HOH 212 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc6 D MG MG . C MG 101 1_555 F O HOH . C HOH 220 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 B DC 1 1_555 B N1 DG 12 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 B DC 1 1_555 B O6 DG 12 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 B DC 1 1_555 B N2 DG 12 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 B DG 2 1_555 B N3 DC 11 C DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 B DG 2 1_555 B O2 DC 11 C DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 B DG 2 1_555 B N4 DC 11 C DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 3 B DC 3 1_555 B N1 DG 10 C DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 3 B DC 3 1_555 B O6 DG 10 C DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 3 B DC 3 1_555 B N2 DG 10 C DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DA 4 B DA 4 1_555 B N3 DT 9 C DT 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N6 DA 4 B DA 4 1_555 B O4 DT 9 C DT 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 DA 5 B DA 5 1_555 B N3 DT 8 C DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N6 DA 5 B DA 5 1_555 B O4 DT 8 C DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 DA 6 B DA 6 1_555 B N3 DT 7 C DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N6 DA 6 B DA 6 1_555 B O4 DT 7 C DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DT 7 B DT 7 1_555 B N1 DA 6 C DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O4 DT 7 B DT 7 1_555 B N6 DA 6 C DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 DT 8 B DT 8 1_555 B N1 DA 5 C DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O4 DT 8 B DT 8 1_555 B N6 DA 5 C DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N3 DT 9 B DT 9 1_555 B N1 DA 4 C DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O4 DT 9 B DT 9 1_555 B N6 DA 4 C DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 DG 10 B DG 10 1_555 B N3 DC 3 C DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N2 DG 10 B DG 10 1_555 B O2 DC 3 C DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O6 DG 10 B DG 10 1_555 B N4 DC 3 C DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N3 DC 11 B DC 11 1_555 B N1 DG 2 C DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N4 DC 11 B DC 11 1_555 B O6 DG 2 C DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O2 DC 11 B DC 11 1_555 B N2 DG 2 C DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N1 DG 12 B DG 12 1_555 B N3 DC 1 C DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N2 DG 12 B DG 12 1_555 B O2 DC 1 C DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A O6 DG 12 B DG 12 1_555 B N4 DC 1 C DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8FDQ _atom_sites.fract_transf_matrix[1][1] 0.041017 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025654 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016447 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 WFB B 1 101 101 WFB DRG . D 3 MG C 1 101 1 MG MG . E 4 HOH B 1 201 63 HOH HOH . E 4 HOH B 2 202 71 HOH HOH . E 4 HOH B 3 203 44 HOH HOH . E 4 HOH B 4 204 64 HOH HOH . E 4 HOH B 5 205 66 HOH HOH . E 4 HOH B 6 206 10 HOH HOH . E 4 HOH B 7 207 13 HOH HOH . E 4 HOH B 8 208 7 HOH HOH . E 4 HOH B 9 209 22 HOH HOH . E 4 HOH B 10 210 1 HOH HOH . E 4 HOH B 11 211 58 HOH HOH . E 4 HOH B 12 212 38 HOH HOH . E 4 HOH B 13 213 15 HOH HOH . E 4 HOH B 14 214 20 HOH HOH . E 4 HOH B 15 215 16 HOH HOH . E 4 HOH B 16 216 29 HOH HOH . E 4 HOH B 17 217 30 HOH HOH . E 4 HOH B 18 218 54 HOH HOH . E 4 HOH B 19 219 70 HOH HOH . E 4 HOH B 20 220 53 HOH HOH . E 4 HOH B 21 221 39 HOH HOH . E 4 HOH B 22 222 11 HOH HOH . E 4 HOH B 23 223 8 HOH HOH . E 4 HOH B 24 224 40 HOH HOH . E 4 HOH B 25 225 52 HOH HOH . E 4 HOH B 26 226 12 HOH HOH . E 4 HOH B 27 227 57 HOH HOH . E 4 HOH B 28 228 51 HOH HOH . E 4 HOH B 29 229 41 HOH HOH . E 4 HOH B 30 230 42 HOH HOH . F 4 HOH C 1 201 61 HOH HOH . F 4 HOH C 2 202 31 HOH HOH . F 4 HOH C 3 203 37 HOH HOH . F 4 HOH C 4 204 56 HOH HOH . F 4 HOH C 5 205 45 HOH HOH . F 4 HOH C 6 206 3 HOH HOH . F 4 HOH C 7 207 36 HOH HOH . F 4 HOH C 8 208 19 HOH HOH . F 4 HOH C 9 209 4 HOH HOH . F 4 HOH C 10 210 17 HOH HOH . F 4 HOH C 11 211 33 HOH HOH . F 4 HOH C 12 212 9 HOH HOH . F 4 HOH C 13 213 68 HOH HOH . F 4 HOH C 14 214 14 HOH HOH . F 4 HOH C 15 215 69 HOH HOH . F 4 HOH C 16 216 28 HOH HOH . F 4 HOH C 17 217 72 HOH HOH . F 4 HOH C 18 218 27 HOH HOH . F 4 HOH C 19 219 62 HOH HOH . F 4 HOH C 20 220 23 HOH HOH . F 4 HOH C 21 221 2 HOH HOH . F 4 HOH C 22 222 47 HOH HOH . F 4 HOH C 23 223 6 HOH HOH . F 4 HOH C 24 224 35 HOH HOH . F 4 HOH C 25 225 25 HOH HOH . F 4 HOH C 26 226 34 HOH HOH . F 4 HOH C 27 227 24 HOH HOH . F 4 HOH C 28 228 21 HOH HOH . F 4 HOH C 29 229 50 HOH HOH . F 4 HOH C 30 230 18 HOH HOH . F 4 HOH C 31 231 48 HOH HOH . F 4 HOH C 32 232 55 HOH HOH . F 4 HOH C 33 233 65 HOH HOH . F 4 HOH C 34 234 67 HOH HOH . F 4 HOH C 35 235 60 HOH HOH . F 4 HOH C 36 236 32 HOH HOH . F 4 HOH C 37 237 49 HOH HOH . F 4 HOH C 38 238 43 HOH HOH . F 4 HOH C 39 239 59 HOH HOH . F 4 HOH C 40 240 46 HOH HOH . F 4 HOH C 41 241 26 HOH HOH . F 4 HOH C 42 242 5 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -1.792 _atom_site.Cartn_y -11.025 _atom_site.Cartn_z 18.001 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 101 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #