data_8FDZ # _model_server_result.job_id hl6YXGYqeHmt34Fr0xbGbA _model_server_result.datetime_utc '2024-10-15 12:24:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fdz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1102}' # _entry.id 8FDZ # _exptl.entry_id 8FDZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 491.493 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-{5-[4-(2-amino-4-oxo-1,4-dihydrothieno[2,3-d]pyrimidin-6-yl)butyl]-3-fluoropyridine-2-carbonyl}-L-glutamic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8FDZ _cell.length_a 74.879 _cell.length_b 74.879 _cell.length_c 100.616 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FDZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H22 F N5 O6 S' _chem_comp.formula_weight 491.493 _chem_comp.id XSO _chem_comp.mon_nstd_flag . _chem_comp.name 'N-{5-[4-(2-amino-4-oxo-1,4-dihydrothieno[2,3-d]pyrimidin-6-yl)butyl]-3-fluoropyridine-2-carbonyl}-L-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N11 C02 XSO sing 407 n n N03 C02 XSO doub 408 n n N03 C04 XSO sing 409 n n C02 N01 XSO sing 410 n n O10 C04 XSO doub 411 n n C04 C08 XSO sing 412 n n N01 C09 XSO sing 413 n n C08 C09 XSO doub 414 n y C08 C05 XSO sing 415 n y C09 S07 XSO sing 416 n y C05 C06 XSO doub 417 n y S07 C06 XSO sing 418 n y C06 C29 XSO sing 419 n n C29 C30 XSO sing 420 n n C30 C31 XSO sing 421 n n C32 C31 XSO sing 422 n n C32 C33 XSO sing 423 n n C15 C33 XSO doub 424 n y C15 N13 XSO sing 425 n y C33 C16 XSO sing 426 n y O28 C26 XSO doub 427 n n N13 C12 XSO doub 428 n y C16 C14 XSO doub 429 n y C26 O27 XSO sing 430 n n C26 C20 XSO sing 431 n n C12 C14 XSO sing 432 n y C12 C17 XSO sing 433 n n C14 F34 XSO sing 434 n n N19 C17 XSO sing 435 n n N19 C20 XSO sing 436 n n C17 O18 XSO doub 437 n n C20 C21 XSO sing 438 n n C21 C22 XSO sing 439 n n O24 C23 XSO doub 440 n n C22 C23 XSO sing 441 n n C23 O25 XSO sing 442 n n C16 H1 XSO sing 443 n n C15 H2 XSO sing 444 n n C05 H3 XSO sing 445 n n C20 H4 XSO sing 446 n n C21 H5 XSO sing 447 n n C21 H6 XSO sing 448 n n C22 H7 XSO sing 449 n n C22 H8 XSO sing 450 n n C29 H9 XSO sing 451 n n C29 H10 XSO sing 452 n n C30 H11 XSO sing 453 n n C30 H12 XSO sing 454 n n C31 H13 XSO sing 455 n n C31 H14 XSO sing 456 n n C32 H15 XSO sing 457 n n C32 H16 XSO sing 458 n n N01 H17 XSO sing 459 n n N11 H18 XSO sing 460 n n N11 H19 XSO sing 461 n n N19 H20 XSO sing 462 n n O25 H21 XSO sing 463 n n O27 H22 XSO sing 464 n n # _atom_sites.entry_id 8FDZ _atom_sites.fract_transf_matrix[1][1] 0.013355 _atom_sites.fract_transf_matrix[1][2] 0.00771 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015421 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GAR A 1 1101 1101 GAR GAR . C 3 XSO A 1 1102 1201 XSO F35 . D 4 HOH A 1 1201 46 HOH HOH . D 4 HOH A 2 1202 94 HOH HOH . D 4 HOH A 3 1203 2 HOH HOH . D 4 HOH A 4 1204 58 HOH HOH . D 4 HOH A 5 1205 13 HOH HOH . D 4 HOH A 6 1206 3 HOH HOH . D 4 HOH A 7 1207 35 HOH HOH . D 4 HOH A 8 1208 61 HOH HOH . D 4 HOH A 9 1209 31 HOH HOH . D 4 HOH A 10 1210 104 HOH HOH . D 4 HOH A 11 1211 20 HOH HOH . D 4 HOH A 12 1212 51 HOH HOH . D 4 HOH A 13 1213 7 HOH HOH . D 4 HOH A 14 1214 83 HOH HOH . D 4 HOH A 15 1215 106 HOH HOH . D 4 HOH A 16 1216 37 HOH HOH . D 4 HOH A 17 1217 71 HOH HOH . D 4 HOH A 18 1218 57 HOH HOH . D 4 HOH A 19 1219 50 HOH HOH . D 4 HOH A 20 1220 6 HOH HOH . D 4 HOH A 21 1221 26 HOH HOH . D 4 HOH A 22 1222 1 HOH HOH . D 4 HOH A 23 1223 67 HOH HOH . D 4 HOH A 24 1224 52 HOH HOH . D 4 HOH A 25 1225 30 HOH HOH . D 4 HOH A 26 1226 59 HOH HOH . D 4 HOH A 27 1227 11 HOH HOH . D 4 HOH A 28 1228 102 HOH HOH . D 4 HOH A 29 1229 17 HOH HOH . D 4 HOH A 30 1230 34 HOH HOH . D 4 HOH A 31 1231 40 HOH HOH . D 4 HOH A 32 1232 32 HOH HOH . D 4 HOH A 33 1233 99 HOH HOH . D 4 HOH A 34 1234 68 HOH HOH . D 4 HOH A 35 1235 4 HOH HOH . D 4 HOH A 36 1236 21 HOH HOH . D 4 HOH A 37 1237 14 HOH HOH . D 4 HOH A 38 1238 91 HOH HOH . D 4 HOH A 39 1239 74 HOH HOH . D 4 HOH A 40 1240 87 HOH HOH . D 4 HOH A 41 1241 22 HOH HOH . D 4 HOH A 42 1242 81 HOH HOH . D 4 HOH A 43 1243 16 HOH HOH . D 4 HOH A 44 1244 89 HOH HOH . D 4 HOH A 45 1245 42 HOH HOH . D 4 HOH A 46 1246 29 HOH HOH . D 4 HOH A 47 1247 5 HOH HOH . D 4 HOH A 48 1248 82 HOH HOH . D 4 HOH A 49 1249 66 HOH HOH . D 4 HOH A 50 1250 84 HOH HOH . D 4 HOH A 51 1251 36 HOH HOH . D 4 HOH A 52 1252 63 HOH HOH . D 4 HOH A 53 1253 25 HOH HOH . D 4 HOH A 54 1254 24 HOH HOH . D 4 HOH A 55 1255 100 HOH HOH . D 4 HOH A 56 1256 45 HOH HOH . D 4 HOH A 57 1257 15 HOH HOH . D 4 HOH A 58 1258 86 HOH HOH . D 4 HOH A 59 1259 27 HOH HOH . D 4 HOH A 60 1260 18 HOH HOH . D 4 HOH A 61 1261 8 HOH HOH . D 4 HOH A 62 1262 44 HOH HOH . D 4 HOH A 63 1263 39 HOH HOH . D 4 HOH A 64 1264 9 HOH HOH . D 4 HOH A 65 1265 64 HOH HOH . D 4 HOH A 66 1266 12 HOH HOH . D 4 HOH A 67 1267 48 HOH HOH . D 4 HOH A 68 1268 60 HOH HOH . D 4 HOH A 69 1269 96 HOH HOH . D 4 HOH A 70 1270 41 HOH HOH . D 4 HOH A 71 1271 98 HOH HOH . D 4 HOH A 72 1272 97 HOH HOH . D 4 HOH A 73 1273 55 HOH HOH . D 4 HOH A 74 1274 53 HOH HOH . D 4 HOH A 75 1275 43 HOH HOH . D 4 HOH A 76 1276 101 HOH HOH . D 4 HOH A 77 1277 95 HOH HOH . D 4 HOH A 78 1278 72 HOH HOH . D 4 HOH A 79 1279 33 HOH HOH . D 4 HOH A 80 1280 28 HOH HOH . D 4 HOH A 81 1281 69 HOH HOH . D 4 HOH A 82 1282 93 HOH HOH . D 4 HOH A 83 1283 105 HOH HOH . D 4 HOH A 84 1284 23 HOH HOH . D 4 HOH A 85 1285 73 HOH HOH . D 4 HOH A 86 1286 75 HOH HOH . D 4 HOH A 87 1287 10 HOH HOH . D 4 HOH A 88 1288 92 HOH HOH . D 4 HOH A 89 1289 62 HOH HOH . D 4 HOH A 90 1290 88 HOH HOH . D 4 HOH A 91 1291 54 HOH HOH . D 4 HOH A 92 1292 85 HOH HOH . D 4 HOH A 93 1293 70 HOH HOH . D 4 HOH A 94 1294 38 HOH HOH . D 4 HOH A 95 1295 103 HOH HOH . D 4 HOH A 96 1296 80 HOH HOH . D 4 HOH A 97 1297 76 HOH HOH . D 4 HOH A 98 1298 79 HOH HOH . D 4 HOH A 99 1299 47 HOH HOH . D 4 HOH A 100 1300 19 HOH HOH . D 4 HOH A 101 1301 90 HOH HOH . D 4 HOH A 102 1302 65 HOH HOH . D 4 HOH A 103 1303 77 HOH HOH . D 4 HOH A 104 1304 56 HOH HOH . D 4 HOH A 105 1305 78 HOH HOH . D 4 HOH A 106 1306 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C17 XSO . . . C 3 25.616 -9.103 -15.383 0.91 41.78 ? C17 XSO 1102 A 1 HETATM 2 C C12 XSO . . . C 3 25.449 -10.425 -16.122 0.91 43.12 ? C12 XSO 1102 A 1 HETATM 3 C C16 XSO . . . C 3 24.418 -12.533 -16.728 0.91 23.49 ? C16 XSO 1102 A 1 HETATM 4 C C15 XSO . . . C 3 26.405 -11.613 -17.741 0.91 39.52 ? C15 XSO 1102 A 1 HETATM 5 C C14 XSO . . . C 3 24.439 -11.373 -15.947 0.91 39.86 ? C14 XSO 1102 A 1 HETATM 6 C C02 XSO . . . C 3 24.377 -10.807 -24.58 0.91 30.77 ? C02 XSO 1102 A 1 HETATM 7 C C04 XSO . . . C 3 24.193 -13.019 -23.948 0.91 29.85 ? C04 XSO 1102 A 1 HETATM 8 C C05 XSO . . . C 3 25.977 -13.874 -22.314 0.91 27.89 ? C05 XSO 1102 A 1 HETATM 9 C C06 XSO . . . C 3 27.104 -13.404 -21.626 0.91 31.04 ? C06 XSO 1102 A 1 HETATM 10 C C08 XSO . . . C 3 25.344 -12.867 -23.152 0.91 24.51 ? C08 XSO 1102 A 1 HETATM 11 C C09 XSO . . . C 3 25.968 -11.613 -23.116 0.91 25.69 ? C09 XSO 1102 A 1 HETATM 12 C C20 XSO . . . C 3 27.336 -7.22 -15.114 0.91 39.06 ? C20 XSO 1102 A 1 HETATM 13 C C21 XSO . . . C 3 28.774 -7.319 -14.653 0.91 35.32 ? C21 XSO 1102 A 1 HETATM 14 C C22 XSO . . . C 3 28.919 -8.108 -13.354 0.91 38.59 ? C22 XSO 1102 A 1 HETATM 15 C C23 XSO . . . C 3 30.391 -8.448 -13.169 0.91 45.95 ? C23 XSO 1102 A 1 HETATM 16 C C26 XSO . . . C 3 27.334 -6.26 -16.281 0.91 43.55 ? C26 XSO 1102 A 1 HETATM 17 C C29 XSO . . . C 3 28.016 -14.153 -20.693 0.91 29.28 ? C29 XSO 1102 A 1 HETATM 18 C C30 XSO . . . C 3 28.124 -13.302 -19.46 0.91 32.8 ? C30 XSO 1102 A 1 HETATM 19 C C31 XSO . . . C 3 27.232 -13.963 -18.433 0.91 41.13 ? C31 XSO 1102 A 1 HETATM 20 C C32 XSO . . . C 3 25.735 -13.702 -18.635 0.91 41.83 ? C32 XSO 1102 A 1 HETATM 21 C C33 XSO . . . C 3 25.45 -12.585 -17.65 0.91 35.92 ? C33 XSO 1102 A 1 HETATM 22 F F34 XSO . . . C 3 23.478 -11.145 -15.001 0.91 55.4 ? F34 XSO 1102 A 1 HETATM 23 N N01 XSO . . . C 3 25.469 -10.607 -23.836 0.91 26.36 ? N01 XSO 1102 A 1 HETATM 24 N N03 XSO . . . C 3 23.746 -11.978 -24.636 0.91 29.44 ? N03 XSO 1102 A 1 HETATM 25 N N11 XSO . . . C 3 23.833 -9.724 -25.374 0.91 34.5 ? N11 XSO 1102 A 1 HETATM 26 N N13 XSO . . . C 3 26.396 -10.563 -16.998 0.91 42.22 ? N13 XSO 1102 A 1 HETATM 27 N N19 XSO . . . C 3 26.904 -8.482 -15.646 0.91 40.28 ? N19 XSO 1102 A 1 HETATM 28 O O10 XSO . . . C 3 23.53 -14.257 -24.024 0.91 28.87 ? O10 XSO 1102 A 1 HETATM 29 O O18 XSO . . . C 3 24.764 -8.621 -14.71 0.91 44.2 ? O18 XSO 1102 A 1 HETATM 30 O O24 XSO . . . C 3 31.281 -7.679 -13.658 0.91 51.74 ? O24 XSO 1102 A 1 HETATM 31 O O25 XSO . . . C 3 30.713 -9.502 -12.563 0.91 54.42 ? O25 XSO 1102 A 1 HETATM 32 O O27 XSO . . . C 3 26.835 -5.116 -16.134 0.91 49.74 ? O27 XSO 1102 A 1 HETATM 33 O O28 XSO . . . C 3 27.84 -6.62 -17.383 0.91 41.19 ? O28 XSO 1102 A 1 HETATM 34 S S07 XSO . . . C 3 27.307 -11.781 -22.053 0.91 29.19 ? S07 XSO 1102 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #