data_8FE1
#
_model_server_result.job_id            J-L7jsjy79cSI_eCdT6pDw 
_model_server_result.datetime_utc      '2025-01-02 19:02:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8fe1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"EA","auth_seq_id":504}' 
#
_entry.id    8FE1 
#
_exptl.entry_id    8FE1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8FE1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8FE1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 Q N N 
? 4 EA N N 
? 4 PA N N 
? 4 YA N N 
? 4 AB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 263 E CYS 182 1_555 E SG CYS 277 E CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 E SG CYS 323 E CYS 242 1_555 E SG CYS 335 E CYS 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
covale ? covale1 A ND2 ASN 62 A ASN 62 1_555 G C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? 
covale ? covale2 B ND2 ASN 62 D ASN 62 1_555 Q C1 NAG . D NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale3 C ND2 ASN 62 C ASN 62 1_555 EA C1 NAG . C NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale4 D ND2 ASN 62 B ASN 62 1_555 PA C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
covale ? covale5 E ND2 ASN 135 E ASN 54 1_555 AB C1 NAG . E NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale6 E ND2 ASN 322 E ASN 241 1_555 YA C1 NAG . E NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 408 n n 
C1 O1 NAG sing 409 n n 
C1 O5 NAG sing 410 n n 
C1 H1 NAG sing 411 n n 
C2 C3 NAG sing 412 n n 
C2 N2 NAG sing 413 n n 
C2 H2 NAG sing 414 n n 
C3 C4 NAG sing 415 n n 
C3 O3 NAG sing 416 n n 
C3 H3 NAG sing 417 n n 
C4 C5 NAG sing 418 n n 
C4 O4 NAG sing 419 n n 
C4 H4 NAG sing 420 n n 
C5 C6 NAG sing 421 n n 
C5 O5 NAG sing 422 n n 
C5 H5 NAG sing 423 n n 
C6 O6 NAG sing 424 n n 
C6 H61 NAG sing 425 n n 
C6 H62 NAG sing 426 n n 
C7 C8 NAG sing 427 n n 
C7 N2 NAG sing 428 n n 
C7 O7 NAG doub 429 n n 
C8 H81 NAG sing 430 n n 
C8 H82 NAG sing 431 n n 
C8 H83 NAG sing 432 n n 
N2 HN2 NAG sing 433 n n 
O1 HO1 NAG sing 434 n n 
O3 HO3 NAG sing 435 n n 
O4 HO4 NAG sing 436 n n 
O6 HO6 NAG sing 437 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8FE1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 3 GLY A 1 501 446 GLY GLY . 
G 4 NAG A 1 502 447 NAG NAG . 
H 5 IVM A 1 503 449 IVM IVM . 
I 5 IVM A 1 504 452 IVM IVM . 
J 6 PX4 A 1 505 454 PX4 PX4 . 
K 3 GLY A 1 506 448 GLY GLY . 
L 7 PLM A 1 507 16 PLM PLM . 
M 7 PLM A 1 508 19 PLM PLM . 
N 7 PLM A 1 509 21 PLM PLM . 
O 7 PLM A 1 510 24 PLM PLM . 
P 7 PLM A 1 511 26 PLM PLM . 
Q 4 NAG D 1 501 447 NAG NAG . 
R 5 IVM D 1 502 448 IVM IVM . 
S 6 PX4 D 1 503 449 PX4 PX4 . 
T 7 PLM D 1 504 450 PLM PLM . 
U 6 PX4 D 1 505 453 PX4 PX4 . 
V 3 GLY D 1 506 498 GLY GLY . 
W 7 PLM D 1 507 2 PLM PLM . 
X 7 PLM D 1 508 3 PLM PLM . 
Y 7 PLM D 1 509 5 PLM PLM . 
Z 7 PLM D 1 510 6 PLM PLM . 
AA 7 PLM D 1 511 30 PLM PLM . 
BA 3 GLY C 1 501 446 GLY GLY . 
CA 6 PX4 C 1 502 454 PX4 PX4 . 
DA 3 GLY C 1 503 446 GLY GLY . 
EA 4 NAG C 1 504 447 NAG NAG . 
FA 5 IVM C 1 505 448 IVM IVM . 
GA 8 D10 C 1 506 449 D10 D10 . 
HA 6 PX4 C 1 507 453 PX4 PX4 . 
IA 7 PLM C 1 508 8 PLM PLM . 
JA 7 PLM C 1 509 9 PLM PLM . 
KA 7 PLM C 1 510 14 PLM PLM . 
LA 7 PLM C 1 511 15 PLM PLM . 
MA 7 PLM C 1 512 28 PLM PLM . 
NA 7 PLM C 1 513 29 PLM PLM . 
OA 6 PX4 B 1 501 453 PX4 PX4 . 
PA 4 NAG B 1 502 449 NAG NAG . 
QA 5 IVM B 1 503 450 IVM IVM . 
RA 6 PX4 B 1 504 451 PX4 PX4 . 
SA 7 PLM B 1 505 12 PLM PLM . 
TA 7 PLM B 1 506 13 PLM PLM . 
UA 7 PLM B 1 507 20 PLM PLM . 
VA 7 PLM B 1 508 22 PLM PLM . 
WA 7 PLM B 1 509 23 PLM PLM . 
XA 7 PLM B 1 510 27 PLM PLM . 
YA 4 NAG E 1 601 502 NAG NAG . 
ZA 6 PX4 E 1 602 504 PX4 PX4 . 
AB 4 NAG E 1 603 505 NAG NAG . 
BB 7 PLM E 1 604 1 PLM PLM . 
CB 7 PLM E 1 605 4 PLM PLM . 
DB 7 PLM E 1 606 17 PLM PLM . 
EB 7 PLM E 1 607 18 PLM PLM . 
FB 7 PLM E 1 608 25 PLM PLM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . EA 4 155.281 104.004 165.24 1 103.12 ? C1 NAG 504 C 1 
HETATM 2 C C2 NAG . . . EA 4 155.544 103.752 166.712 1 103.12 ? C2 NAG 504 C 1 
HETATM 3 C C3 NAG . . . EA 4 157.031 103.913 166.966 1 103.12 ? C3 NAG 504 C 1 
HETATM 4 C C4 NAG . . . EA 4 157.838 102.975 166.07 1 103.12 ? C4 NAG 504 C 1 
HETATM 5 C C5 NAG . . . EA 4 157.43 103.161 164.605 1 103.12 ? C5 NAG 504 C 1 
HETATM 6 C C6 NAG . . . EA 4 158.001 102.099 163.694 1 103.12 ? C6 NAG 504 C 1 
HETATM 7 C C7 NAG . . . EA 4 154.105 104.256 168.633 1 103.12 ? C7 NAG 504 C 1 
HETATM 8 C C8 NAG . . . EA 4 153.355 105.319 169.377 1 103.12 ? C8 NAG 504 C 1 
HETATM 9 N N2 NAG . . . EA 4 154.775 104.659 167.548 1 103.12 ? N2 NAG 504 C 1 
HETATM 10 O O3 NAG . . . EA 4 157.312 103.643 168.334 1 103.12 ? O3 NAG 504 C 1 
HETATM 11 O O4 NAG . . . EA 4 159.228 103.247 166.206 1 103.12 ? O4 NAG 504 C 1 
HETATM 12 O O5 NAG . . . EA 4 155.998 103.078 164.487 1 103.12 ? O5 NAG 504 C 1 
HETATM 13 O O6 NAG . . . EA 4 157.006 101.164 163.301 1 103.12 ? O6 NAG 504 C 1 
HETATM 14 O O7 NAG . . . EA 4 154.105 103.084 168.998 1 103.12 ? O7 NAG 504 C 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           14 
#