data_8FE1
#
_model_server_result.job_id            znfpMK7NNwd9aavg3Q15hw 
_model_server_result.datetime_utc      '2025-01-02 19:54:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8fe1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":505}' 
#
_entry.id    8FE1 
#
_exptl.entry_id    8FE1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              678.94 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8FE1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8FE1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 J N N 
? 6 S N N 
? 6 U N N 
? 6 CA N N 
? 6 HA N N 
? 6 OA N N 
? 6 RA N N 
? 6 ZA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 263 E CYS 182 1_555 E SG CYS 277 E CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 E SG CYS 323 E CYS 242 1_555 E SG CYS 335 E CYS 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
covale ? covale1 A ND2 ASN 62 A ASN 62 1_555 G C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? 
covale ? covale2 B ND2 ASN 62 D ASN 62 1_555 Q C1 NAG . D NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale3 C ND2 ASN 62 C ASN 62 1_555 EA C1 NAG . C NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale4 D ND2 ASN 62 B ASN 62 1_555 PA C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
covale ? covale5 E ND2 ASN 135 E ASN 54 1_555 AB C1 NAG . E NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale6 E ND2 ASN 322 E ASN 241 1_555 YA C1 NAG . E NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
#
_chem_comp.formula           'C36 H73 N O8 P 1' 
_chem_comp.formula_weight    678.94 
_chem_comp.id                PX4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 PX4 sing 527 n n 
O1 H1P PX4 sing 528 n n 
O2 P1 PX4 doub 529 n n 
P1 O3 PX4 sing 530 n n 
P1 O4 PX4 sing 531 n n 
O3 C1 PX4 sing 532 n n 
C1 C2 PX4 sing 533 n n 
C1 H1 PX4 sing 534 n n 
C1 H2 PX4 sing 535 n n 
C2 N1 PX4 sing 536 n n 
C2 H3 PX4 sing 537 n n 
C2 H4 PX4 sing 538 n n 
N1 C3 PX4 sing 539 n n 
N1 C4 PX4 sing 540 n n 
N1 C5 PX4 sing 541 n n 
C3 H5 PX4 sing 542 n n 
C3 H6 PX4 sing 543 n n 
C3 H7 PX4 sing 544 n n 
C4 H8 PX4 sing 545 n n 
C4 H9 PX4 sing 546 n n 
C4 H10 PX4 sing 547 n n 
C5 H11 PX4 sing 548 n n 
C5 H12 PX4 sing 549 n n 
C5 H13 PX4 sing 550 n n 
O4 C6 PX4 sing 551 n n 
C6 C7 PX4 sing 552 n n 
C6 H14 PX4 sing 553 n n 
C6 H15 PX4 sing 554 n n 
C7 C8 PX4 sing 555 n n 
C7 O7 PX4 sing 556 n n 
C7 H16 PX4 sing 557 n n 
C8 O5 PX4 sing 558 n n 
C8 H17 PX4 sing 559 n n 
C8 H18 PX4 sing 560 n n 
O5 C9 PX4 sing 561 n n 
C9 O6 PX4 doub 562 n n 
C9 C10 PX4 sing 563 n n 
C10 C11 PX4 sing 564 n n 
C10 H19 PX4 sing 565 n n 
C10 H20 PX4 sing 566 n n 
C11 C12 PX4 sing 567 n n 
C11 H21 PX4 sing 568 n n 
C11 H22 PX4 sing 569 n n 
C12 C13 PX4 sing 570 n n 
C12 H23 PX4 sing 571 n n 
C12 H24 PX4 sing 572 n n 
C13 C14 PX4 sing 573 n n 
C13 H25 PX4 sing 574 n n 
C13 H26 PX4 sing 575 n n 
C14 C15 PX4 sing 576 n n 
C14 H27 PX4 sing 577 n n 
C14 H28 PX4 sing 578 n n 
C15 C16 PX4 sing 579 n n 
C15 H29 PX4 sing 580 n n 
C15 H30 PX4 sing 581 n n 
C16 C17 PX4 sing 582 n n 
C16 H31 PX4 sing 583 n n 
C16 H32 PX4 sing 584 n n 
C17 C18 PX4 sing 585 n n 
C17 H33 PX4 sing 586 n n 
C17 H34 PX4 sing 587 n n 
C18 C19 PX4 sing 588 n n 
C18 H35 PX4 sing 589 n n 
C18 H36 PX4 sing 590 n n 
C19 C20 PX4 sing 591 n n 
C19 H37 PX4 sing 592 n n 
C19 H38 PX4 sing 593 n n 
C20 C21 PX4 sing 594 n n 
C20 H39 PX4 sing 595 n n 
C20 H40 PX4 sing 596 n n 
C21 C22 PX4 sing 597 n n 
C21 H41 PX4 sing 598 n n 
C21 H42 PX4 sing 599 n n 
C22 H43 PX4 sing 600 n n 
C22 H44 PX4 sing 601 n n 
C22 H45 PX4 sing 602 n n 
O7 C23 PX4 sing 603 n n 
C23 O8 PX4 doub 604 n n 
C23 C24 PX4 sing 605 n n 
C24 C25 PX4 sing 606 n n 
C24 H46 PX4 sing 607 n n 
C24 H47 PX4 sing 608 n n 
C25 C26 PX4 sing 609 n n 
C25 H48 PX4 sing 610 n n 
C25 H49 PX4 sing 611 n n 
C26 C27 PX4 sing 612 n n 
C26 H50 PX4 sing 613 n n 
C26 H51 PX4 sing 614 n n 
C27 C28 PX4 sing 615 n n 
C27 H52 PX4 sing 616 n n 
C27 H53 PX4 sing 617 n n 
C28 C29 PX4 sing 618 n n 
C28 H54 PX4 sing 619 n n 
C28 H55 PX4 sing 620 n n 
C29 C30 PX4 sing 621 n n 
C29 H56 PX4 sing 622 n n 
C29 H57 PX4 sing 623 n n 
C30 C31 PX4 sing 624 n n 
C30 H58 PX4 sing 625 n n 
C30 H59 PX4 sing 626 n n 
C31 C32 PX4 sing 627 n n 
C31 H60 PX4 sing 628 n n 
C31 H61 PX4 sing 629 n n 
C32 C33 PX4 sing 630 n n 
C32 H62 PX4 sing 631 n n 
C32 H63 PX4 sing 632 n n 
C33 C34 PX4 sing 633 n n 
C33 H64 PX4 sing 634 n n 
C33 H65 PX4 sing 635 n n 
C34 C35 PX4 sing 636 n n 
C34 H66 PX4 sing 637 n n 
C34 H67 PX4 sing 638 n n 
C35 C36 PX4 sing 639 n n 
C35 H68 PX4 sing 640 n n 
C35 H69 PX4 sing 641 n n 
C36 H70 PX4 sing 642 n n 
C36 H71 PX4 sing 643 n n 
C36 H72 PX4 sing 644 n n 
#
_atom_sites.entry_id                     8FE1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 3 GLY A 1 501 446 GLY GLY . 
G 4 NAG A 1 502 447 NAG NAG . 
H 5 IVM A 1 503 449 IVM IVM . 
I 5 IVM A 1 504 452 IVM IVM . 
J 6 PX4 A 1 505 454 PX4 PX4 . 
K 3 GLY A 1 506 448 GLY GLY . 
L 7 PLM A 1 507 16 PLM PLM . 
M 7 PLM A 1 508 19 PLM PLM . 
N 7 PLM A 1 509 21 PLM PLM . 
O 7 PLM A 1 510 24 PLM PLM . 
P 7 PLM A 1 511 26 PLM PLM . 
Q 4 NAG D 1 501 447 NAG NAG . 
R 5 IVM D 1 502 448 IVM IVM . 
S 6 PX4 D 1 503 449 PX4 PX4 . 
T 7 PLM D 1 504 450 PLM PLM . 
U 6 PX4 D 1 505 453 PX4 PX4 . 
V 3 GLY D 1 506 498 GLY GLY . 
W 7 PLM D 1 507 2 PLM PLM . 
X 7 PLM D 1 508 3 PLM PLM . 
Y 7 PLM D 1 509 5 PLM PLM . 
Z 7 PLM D 1 510 6 PLM PLM . 
AA 7 PLM D 1 511 30 PLM PLM . 
BA 3 GLY C 1 501 446 GLY GLY . 
CA 6 PX4 C 1 502 454 PX4 PX4 . 
DA 3 GLY C 1 503 446 GLY GLY . 
EA 4 NAG C 1 504 447 NAG NAG . 
FA 5 IVM C 1 505 448 IVM IVM . 
GA 8 D10 C 1 506 449 D10 D10 . 
HA 6 PX4 C 1 507 453 PX4 PX4 . 
IA 7 PLM C 1 508 8 PLM PLM . 
JA 7 PLM C 1 509 9 PLM PLM . 
KA 7 PLM C 1 510 14 PLM PLM . 
LA 7 PLM C 1 511 15 PLM PLM . 
MA 7 PLM C 1 512 28 PLM PLM . 
NA 7 PLM C 1 513 29 PLM PLM . 
OA 6 PX4 B 1 501 453 PX4 PX4 . 
PA 4 NAG B 1 502 449 NAG NAG . 
QA 5 IVM B 1 503 450 IVM IVM . 
RA 6 PX4 B 1 504 451 PX4 PX4 . 
SA 7 PLM B 1 505 12 PLM PLM . 
TA 7 PLM B 1 506 13 PLM PLM . 
UA 7 PLM B 1 507 20 PLM PLM . 
VA 7 PLM B 1 508 22 PLM PLM . 
WA 7 PLM B 1 509 23 PLM PLM . 
XA 7 PLM B 1 510 27 PLM PLM . 
YA 4 NAG E 1 601 502 NAG NAG . 
ZA 6 PX4 E 1 602 504 PX4 PX4 . 
AB 4 NAG E 1 603 505 NAG NAG . 
BB 7 PLM E 1 604 1 PLM PLM . 
CB 7 PLM E 1 605 4 PLM PLM . 
DB 7 PLM E 1 606 17 PLM PLM . 
EB 7 PLM E 1 607 18 PLM PLM . 
FB 7 PLM E 1 608 25 PLM PLM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 PX4 . . . J 6 130.537 160.92 120.259 1 110.32 ? C7 PX4 505 A 1 
HETATM 2 C C8 PX4 . . . J 6 131.224 161.929 119.22 1 110.32 ? C8 PX4 505 A 1 
HETATM 3 O O5 PX4 . . . J 6 130.384 162.052 118.023 1 110.32 ? O5 PX4 505 A 1 
HETATM 4 C C9 PX4 . . . J 6 129.276 163.003 118.168 1 110.32 ? C9 PX4 505 A 1 
HETATM 5 O O6 PX4 . . . J 6 129.231 163.761 119.154 1 110.32 ? O6 PX4 505 A 1 
HETATM 6 C C10 PX4 . . . J 6 128.124 163.073 117.055 1 110.32 ? C10 PX4 505 A 1 
HETATM 7 C C11 PX4 . . . J 6 128.469 162.083 115.845 1 110.32 ? C11 PX4 505 A 1 
HETATM 8 C C12 PX4 . . . J 6 127.345 162.235 114.713 1 110.32 ? C12 PX4 505 A 1 
HETATM 9 C C13 PX4 . . . J 6 127.906 161.715 113.305 1 110.32 ? C13 PX4 505 A 1 
HETATM 10 C C14 PX4 . . . J 6 126.838 162.065 112.161 1 110.32 ? C14 PX4 505 A 1 
HETATM 11 C C15 PX4 . . . J 6 127.465 161.787 110.713 1 110.32 ? C15 PX4 505 A 1 
HETATM 12 C C16 PX4 . . . J 6 127.853 160.238 110.575 1 110.32 ? C16 PX4 505 A 1 
HETATM 13 C C17 PX4 . . . J 6 128.21 159.922 109.043 1 110.32 ? C17 PX4 505 A 1 
HETATM 14 C C18 PX4 . . . J 6 128.644 158.384 108.895 1 110.32 ? C18 PX4 505 A 1 
HETATM 15 C C19 PX4 . . . J 6 128.831 158.031 107.342 1 110.32 ? C19 PX4 505 A 1 
HETATM 16 C C20 PX4 . . . J 6 129.256 156.491 107.188 1 110.32 ? C20 PX4 505 A 1 
HETATM 17 C C21 PX4 . . . J 6 129.321 156.109 105.631 1 110.32 ? C21 PX4 505 A 1 
HETATM 18 C C22 PX4 . . . J 6 129.709 154.559 105.476 1 110.32 ? C22 PX4 505 A 1 
HETATM 19 O O7 PX4 . . . J 6 131.489 159.856 120.614 1 110.32 ? O7 PX4 505 A 1 
HETATM 20 C C23 PX4 . . . J 6 130.992 158.498 120.357 1 110.32 ? C23 PX4 505 A 1 
HETATM 21 O O8 PX4 . . . J 6 131.421 157.543 121.027 1 110.32 ? O8 PX4 505 A 1 
HETATM 22 C C24 PX4 . . . J 6 129.896 158.245 119.211 1 110.32 ? C24 PX4 505 A 1 
HETATM 23 C C25 PX4 . . . J 6 130.514 157.28 118.088 1 110.32 ? C25 PX4 505 A 1 
HETATM 24 C C26 PX4 . . . J 6 129.653 157.403 116.742 1 110.32 ? C26 PX4 505 A 1 
HETATM 25 C C27 PX4 . . . J 6 130.325 156.497 115.604 1 110.32 ? C27 PX4 505 A 1 
HETATM 26 C C28 PX4 . . . J 6 129.636 156.803 114.193 1 110.32 ? C28 PX4 505 A 1 
HETATM 27 C C29 PX4 . . . J 6 130.279 155.848 113.077 1 110.32 ? C29 PX4 505 A 1 
HETATM 28 C C30 PX4 . . . J 6 129.551 156.096 111.671 1 110.32 ? C30 PX4 505 A 1 
HETATM 29 C C31 PX4 . . . J 6 129.969 154.935 110.648 1 110.32 ? C31 PX4 505 A 1 
HETATM 30 C C32 PX4 . . . J 6 129.629 153.507 111.297 1 110.32 ? C32 PX4 505 A 1 
HETATM 31 C C33 PX4 . . . J 6 129.983 152.344 110.249 1 110.32 ? C33 PX4 505 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    44 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           31 
#