data_8FE8 # _model_server_result.job_id -bwe22qcwV4lOwwZgqJhRA _model_server_result.datetime_utc '2025-02-23 23:39:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fe8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8FE8 # _exptl.entry_id 8FE8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 529.613 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(4-{4-[(E)-2-cyanoethenyl]-2,6-dimethylphenoxy}pyrimidin-2-yl)amino]-2-[4-(methanesulfonyl)piperazin-1-yl]benzonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.853 _cell.angle_gamma 90 _cell.entry_id 8FE8 _cell.length_a 162.076 _cell.length_b 72.613 _cell.length_c 108.426 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FE8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H27 N7 O3 S' _chem_comp.formula_weight 529.613 _chem_comp.id XRB _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(4-{4-[(E)-2-cyanoethenyl]-2,6-dimethylphenoxy}pyrimidin-2-yl)amino]-2-[4-(methanesulfonyl)piperazin-1-yl]benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C13 XRB doub 389 n y N1 C14 XRB sing 390 n y C26 C25 XRB doub 391 n y C26 C15 XRB sing 392 n y N2 C14 XRB sing 393 n n N2 C15 XRB sing 394 n n C13 C12 XRB sing 395 n y C25 C19 XRB sing 396 n y C14 N6 XRB doub 397 n y C15 C16 XRB doub 398 n y C12 C11 XRB doub 399 n y C19 N4 XRB sing 400 n n C19 C17 XRB doub 401 n y N6 C11 XRB sing 402 n y C16 C17 XRB sing 403 n y C20 N4 XRB sing 404 n n C20 C21 XRB sing 405 n n C24 N4 XRB sing 406 n n C24 C23 XRB sing 407 n n C11 O XRB sing 408 n n C23 N5 XRB sing 409 n n C17 C18 XRB sing 410 n n C21 N5 XRB sing 411 n n O2 S XRB doub 412 n n N5 S XRB sing 413 n n O C10 XRB sing 414 n n C18 N3 XRB trip 415 n n C C1 XRB sing 416 n n S O1 XRB doub 417 n n S C22 XRB sing 418 n n C10 C1 XRB doub 419 n y C10 C8 XRB sing 420 n y C1 C2 XRB sing 421 n y C9 C8 XRB sing 422 n n C8 C7 XRB doub 423 n y C2 C3 XRB doub 424 n y C7 C3 XRB sing 425 n y C3 C4 XRB sing 426 n n C4 C5 XRB doub 427 e n C5 C6 XRB sing 428 n n C6 N XRB trip 429 n n C H1 XRB sing 430 n n C H2 XRB sing 431 n n C H3 XRB sing 432 n n C12 H4 XRB sing 433 n n C13 H5 XRB sing 434 n n C16 H6 XRB sing 435 n n C2 H7 XRB sing 436 n n C20 H8 XRB sing 437 n n C20 H9 XRB sing 438 n n C21 H10 XRB sing 439 n n C21 H11 XRB sing 440 n n C22 H12 XRB sing 441 n n C22 H13 XRB sing 442 n n C22 H14 XRB sing 443 n n C23 H15 XRB sing 444 n n C23 H16 XRB sing 445 n n C24 H17 XRB sing 446 n n C24 H18 XRB sing 447 n n C25 H19 XRB sing 448 n n C26 H20 XRB sing 449 n n C4 H21 XRB sing 450 n n C5 H22 XRB sing 451 n n C7 H23 XRB sing 452 n n C9 H24 XRB sing 453 n n C9 H25 XRB sing 454 n n C9 H26 XRB sing 455 n n N2 H27 XRB sing 456 n n # _atom_sites.entry_id 8FE8 _atom_sites.fract_transf_matrix[1][1] 0.00617 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001072 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009361 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 XRB A 1 601 601 XRB 18B . D 4 SO4 A 1 602 2 SO4 SO4 . E 4 SO4 A 1 603 3 SO4 SO4 . F 4 SO4 A 1 604 6 SO4 SO4 . G 5 EDO B 1 501 501 EDO EDO . H 4 SO4 B 1 502 1 SO4 SO4 . I 4 SO4 B 1 503 4 SO4 SO4 . J 4 SO4 B 1 504 5 SO4 SO4 . K 6 HOH A 1 701 85 HOH HOH . K 6 HOH A 2 702 61 HOH HOH . K 6 HOH A 3 703 67 HOH HOH . K 6 HOH A 4 704 6 HOH HOH . K 6 HOH A 5 705 20 HOH HOH . K 6 HOH A 6 706 51 HOH HOH . K 6 HOH A 7 707 26 HOH HOH . K 6 HOH A 8 708 95 HOH HOH . K 6 HOH A 9 709 44 HOH HOH . K 6 HOH A 10 710 81 HOH HOH . K 6 HOH A 11 711 80 HOH HOH . K 6 HOH A 12 712 40 HOH HOH . K 6 HOH A 13 713 32 HOH HOH . K 6 HOH A 14 714 42 HOH HOH . K 6 HOH A 15 715 90 HOH HOH . K 6 HOH A 16 716 11 HOH HOH . K 6 HOH A 17 717 19 HOH HOH . K 6 HOH A 18 718 47 HOH HOH . K 6 HOH A 19 719 12 HOH HOH . K 6 HOH A 20 720 63 HOH HOH . K 6 HOH A 21 721 9 HOH HOH . K 6 HOH A 22 722 7 HOH HOH . K 6 HOH A 23 723 89 HOH HOH . K 6 HOH A 24 724 73 HOH HOH . K 6 HOH A 25 725 69 HOH HOH . K 6 HOH A 26 726 41 HOH HOH . K 6 HOH A 27 727 52 HOH HOH . K 6 HOH A 28 728 34 HOH HOH . K 6 HOH A 29 729 49 HOH HOH . K 6 HOH A 30 730 91 HOH HOH . K 6 HOH A 31 731 68 HOH HOH . K 6 HOH A 32 732 64 HOH HOH . K 6 HOH A 33 733 24 HOH HOH . K 6 HOH A 34 734 31 HOH HOH . K 6 HOH A 35 735 17 HOH HOH . K 6 HOH A 36 736 88 HOH HOH . K 6 HOH A 37 737 29 HOH HOH . K 6 HOH A 38 738 4 HOH HOH . K 6 HOH A 39 739 8 HOH HOH . K 6 HOH A 40 740 71 HOH HOH . K 6 HOH A 41 741 83 HOH HOH . K 6 HOH A 42 742 54 HOH HOH . K 6 HOH A 43 743 62 HOH HOH . K 6 HOH A 44 744 72 HOH HOH . K 6 HOH A 45 745 78 HOH HOH . K 6 HOH A 46 746 92 HOH HOH . K 6 HOH A 47 747 55 HOH HOH . K 6 HOH A 48 748 56 HOH HOH . K 6 HOH A 49 749 18 HOH HOH . K 6 HOH A 50 750 38 HOH HOH . K 6 HOH A 51 751 43 HOH HOH . K 6 HOH A 52 752 22 HOH HOH . K 6 HOH A 53 753 93 HOH HOH . K 6 HOH A 54 754 36 HOH HOH . K 6 HOH A 55 755 30 HOH HOH . K 6 HOH A 56 756 59 HOH HOH . K 6 HOH A 57 757 66 HOH HOH . K 6 HOH A 58 758 97 HOH HOH . K 6 HOH A 59 759 100 HOH HOH . K 6 HOH A 60 760 46 HOH HOH . K 6 HOH A 61 761 45 HOH HOH . L 6 HOH B 1 601 13 HOH HOH . L 6 HOH B 2 602 3 HOH HOH . L 6 HOH B 3 603 50 HOH HOH . L 6 HOH B 4 604 2 HOH HOH . L 6 HOH B 5 605 48 HOH HOH . L 6 HOH B 6 606 87 HOH HOH . L 6 HOH B 7 607 39 HOH HOH . L 6 HOH B 8 608 35 HOH HOH . L 6 HOH B 9 609 16 HOH HOH . L 6 HOH B 10 610 5 HOH HOH . L 6 HOH B 11 611 79 HOH HOH . L 6 HOH B 12 612 77 HOH HOH . L 6 HOH B 13 613 86 HOH HOH . L 6 HOH B 14 614 65 HOH HOH . L 6 HOH B 15 615 25 HOH HOH . L 6 HOH B 16 616 14 HOH HOH . L 6 HOH B 17 617 58 HOH HOH . L 6 HOH B 18 618 23 HOH HOH . L 6 HOH B 19 619 74 HOH HOH . L 6 HOH B 20 620 76 HOH HOH . L 6 HOH B 21 621 99 HOH HOH . L 6 HOH B 22 622 37 HOH HOH . L 6 HOH B 23 623 82 HOH HOH . L 6 HOH B 24 624 27 HOH HOH . L 6 HOH B 25 625 84 HOH HOH . L 6 HOH B 26 626 70 HOH HOH . L 6 HOH B 27 627 60 HOH HOH . L 6 HOH B 28 628 15 HOH HOH . L 6 HOH B 29 629 96 HOH HOH . L 6 HOH B 30 630 75 HOH HOH . L 6 HOH B 31 631 57 HOH HOH . L 6 HOH B 32 632 28 HOH HOH . L 6 HOH B 33 633 53 HOH HOH . L 6 HOH B 34 634 33 HOH HOH . L 6 HOH B 35 635 98 HOH HOH . L 6 HOH B 36 636 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N XRB . . . C 3 46.337 -28.471 42.099 1 94.93 ? N XRB 601 A 1 HETATM 2 C C XRB . . . C 3 49.913 -23.344 37.316 1 88.01 ? C XRB 601 A 1 HETATM 3 O O XRB . . . C 3 52.524 -24.441 36.98 1 96.98 ? O XRB 601 A 1 HETATM 4 C C1 XRB . . . C 3 50.346 -24.643 37.944 1 93.34 ? C1 XRB 601 A 1 HETATM 5 C C10 XRB . . . C 3 51.621 -25.17 37.743 1 94.15 ? C10 XRB 601 A 1 HETATM 6 C C11 XRB . . . C 3 52.608 -24.727 35.647 1 98.08 ? C11 XRB 601 A 1 HETATM 7 C C12 XRB . . . C 3 53.275 -23.794 34.852 1 94.62 ? C12 XRB 601 A 1 HETATM 8 C C13 XRB . . . C 3 53.365 -24.143 33.52 1 100.47 ? C13 XRB 601 A 1 HETATM 9 C C14 XRB . . . C 3 52.245 -26.078 33.881 1 96.31 ? C14 XRB 601 A 1 HETATM 10 C C15 XRB . . . C 3 51.274 -28.433 33.938 1 102.57 ? C15 XRB 601 A 1 HETATM 11 C C16 XRB . . . C 3 50.878 -28.482 35.271 1 97.35 ? C16 XRB 601 A 1 HETATM 12 C C17 XRB . . . C 3 50.421 -29.676 35.812 1 100.61 ? C17 XRB 601 A 1 HETATM 13 C C18 XRB . . . C 3 50.026 -29.715 37.197 1 102 ? C18 XRB 601 A 1 HETATM 14 C C19 XRB . . . C 3 50.35 -30.835 35.024 1 96.02 ? C19 XRB 601 A 1 HETATM 15 C C2 XRB . . . C 3 49.475 -25.365 38.755 1 90.32 ? C2 XRB 601 A 1 HETATM 16 C C20 XRB . . . C 3 48.429 -32.286 35.332 1 109.65 ? C20 XRB 601 A 1 HETATM 17 C C21 XRB . . . C 3 47.851 -33.168 36.416 1 111.88 ? C21 XRB 601 A 1 HETATM 18 C C22 XRB . . . C 3 49.461 -36.144 38.576 1 131.7 ? C22 XRB 601 A 1 HETATM 19 C C23 XRB . . . C 3 49.803 -34.459 35.677 1 112.45 ? C23 XRB 601 A 1 HETATM 20 C C24 XRB . . . C 3 50.657 -33.218 35.497 1 109.62 ? C24 XRB 601 A 1 HETATM 21 C C25 XRB . . . C 3 50.755 -30.775 33.695 1 88.47 ? C25 XRB 601 A 1 HETATM 22 C C26 XRB . . . C 3 51.213 -29.583 33.158 1 96.74 ? C26 XRB 601 A 1 HETATM 23 C C3 XRB . . . C 3 49.852 -26.572 39.349 1 87.68 ? C3 XRB 601 A 1 HETATM 24 C C4 XRB . . . C 3 48.939 -27.316 40.222 1 93.9 ? C4 XRB 601 A 1 HETATM 25 C C5 XRB . . . C 3 47.701 -26.96 40.53 1 94.98 ? C5 XRB 601 A 1 HETATM 26 C C6 XRB . . . C 3 46.93 -27.787 41.399 1 98.99 ? C6 XRB 601 A 1 HETATM 27 C C7 XRB . . . C 3 51.137 -27.06 39.107 1 95.58 ? C7 XRB 601 A 1 HETATM 28 C C8 XRB . . . C 3 52.042 -26.375 38.305 1 101.9 ? C8 XRB 601 A 1 HETATM 29 C C9 XRB . . . C 3 53.424 -26.929 38.071 1 91.31 ? C9 XRB 601 A 1 HETATM 30 N N1 XRB . . . C 3 52.865 -25.273 33.006 1 99.41 ? N1 XRB 601 A 1 HETATM 31 N N2 XRB . . . C 3 51.727 -27.228 33.356 1 98.92 ? N2 XRB 601 A 1 HETATM 32 N N3 XRB . . . C 3 49.705 -29.784 38.291 1 102.31 ? N3 XRB 601 A 1 HETATM 33 N N4 XRB . . . C 3 49.838 -32.008 35.605 1 105.99 ? N4 XRB 601 A 1 HETATM 34 N N5 XRB . . . C 3 48.828 -34.221 36.758 1 113.5 ? N5 XRB 601 A 1 HETATM 35 N N6 XRB . . . C 3 52.086 -25.859 35.197 1 95.54 ? N6 XRB 601 A 1 HETATM 36 O O1 XRB . . . C 3 47.11 -35.113 38.273 1 127.79 ? O1 XRB 601 A 1 HETATM 37 O O2 XRB . . . C 3 48.012 -36.52 36.469 1 120.49 ? O2 XRB 601 A 1 HETATM 38 S S XRB . . . C 3 48.223 -35.543 37.49 1 127.86 ? S XRB 601 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 56 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 1312 _model_server_stats.encode_time_ms 47 _model_server_stats.element_count 38 #