data_8FEC # _model_server_result.job_id G5t34lOxz6uHon5tOkzqSQ _model_server_result.datetime_utc '2024-11-23 00:28:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fec # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 8FEC # _exptl.entry_id 8FEC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 378.25 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[(6P)-6-(4-bromo-1-methyl-1H-imidazol-5-yl)-2,3-dihydro-4H-1,4-thiazin-4-yl]-7H-purine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 88.95 _cell.angle_beta 86.14 _cell.angle_gamma 89.86 _cell.entry_id 8FEC _cell.length_a 50.64 _cell.length_b 59.1 _cell.length_c 91.008 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FEC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E 1 1 C,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 193 A PHE 193 1_555 A N SEP 194 A SEP 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C SEP 194 A SEP 194 1_555 A N GLU 195 A GLU 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C TRP 251 A TRP 251 1_555 A N TPO 252 A TPO 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale4 A C TPO 252 A TPO 252 1_555 A N LEU 253 A LEU 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale5 A C VAL 392 A VAL 392 1_555 A N SEP 393 A SEP 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C SEP 393 A SEP 393 1_555 A N ILE 394 A ILE 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 C C TRP 251 B TRP 251 1_555 C N TPO 252 B TPO 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 C C TPO 252 B TPO 252 1_555 C N LEU 253 B LEU 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale9 C C VAL 392 B VAL 392 1_555 C N SEP 393 B SEP 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 C C SEP 393 B SEP 393 1_555 C N ILE 394 B ILE 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C13 H12 Br N7 S' _chem_comp.formula_weight 378.25 _chem_comp.id XU0 _chem_comp.mon_nstd_flag . _chem_comp.name 6-[(6P)-6-(4-bromo-1-methyl-1H-imidazol-5-yl)-2,3-dihydro-4H-1,4-thiazin-4-yl]-7H-purine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C07 C06 XU0 sing 413 n n C07 S01 XU0 sing 414 n n N01 C02 XU0 doub 415 n y N01 C01 XU0 sing 416 n y C02 N02 XU0 sing 417 n y C06 N05 XU0 sing 418 n n N05 C01 XU0 sing 419 n n N05 C09 XU0 sing 420 n n C01 C04 XU0 doub 421 n y N02 C03 XU0 doub 422 n y S01 C08 XU0 sing 423 n n C09 C08 XU0 doub 424 n n C13 N07 XU0 sing 425 n n C03 C04 XU0 sing 426 n y C03 N04 XU0 sing 427 n y C04 N03 XU0 sing 428 n y C08 C10 XU0 sing 429 n n N07 C10 XU0 sing 430 n y N07 C12 XU0 sing 431 n y N04 C05 XU0 doub 432 n y C10 C11 XU0 doub 433 n y N03 C05 XU0 sing 434 n y C12 N06 XU0 doub 435 n y C11 N06 XU0 sing 436 n y C11 BR01 XU0 sing 437 n n C13 H1 XU0 sing 438 n n C13 H2 XU0 sing 439 n n C13 H3 XU0 sing 440 n n C12 H4 XU0 sing 441 n n C02 H5 XU0 sing 442 n n C05 H6 XU0 sing 443 n n C06 H7 XU0 sing 444 n n C06 H8 XU0 sing 445 n n C07 H9 XU0 sing 446 n n C07 H10 XU0 sing 447 n n C09 H12 XU0 sing 448 n n N03 H14 XU0 sing 449 n n # _atom_sites.entry_id 8FEC _atom_sites.fract_transf_matrix[1][1] 0.019747 _atom_sites.fract_transf_matrix[1][2] -0.000048 _atom_sites.fract_transf_matrix[1][3] -0.001332 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016921 _atom_sites.fract_transf_matrix[2][3] -0.000308 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011015 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 XU0 A 1 501 501 XU0 41B . F 4 XU0 B 1 501 501 XU0 41B . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 XU0 . . . F 4 -5.634 -28.352 -25.09 1 83.93 ? C13 XU0 501 B 1 HETATM 2 C C12 XU0 . . . F 4 -5.317 -28.331 -27.585 1 86.16 ? C12 XU0 501 B 1 HETATM 3 C C01 XU0 . . . F 4 -0.229 -32.366 -24.157 1 85.28 ? C01 XU0 501 B 1 HETATM 4 C C02 XU0 . . . F 4 1.523 -33.433 -23.176 1 85.65 ? C02 XU0 501 B 1 HETATM 5 C C03 XU0 . . . F 4 1.895 -32.589 -25.282 1 81.81 ? C03 XU0 501 B 1 HETATM 6 C C04 XU0 . . . F 4 0.571 -32.126 -25.284 1 83.31 ? C04 XU0 501 B 1 HETATM 7 C C05 XU0 . . . F 4 1.566 -31.61 -27.135 1 75.51 ? C05 XU0 501 B 1 HETATM 8 C C06 XU0 . . . F 4 -2.554 -32.649 -23.166 1 82.04 ? C06 XU0 501 B 1 HETATM 9 C C07 XU0 . . . F 4 -3.911 -31.841 -22.958 1 83.77 ? C07 XU0 501 B 1 HETATM 10 C C08 XU0 . . . F 4 -3.335 -30.539 -25.291 1 86.89 ? C08 XU0 501 B 1 HETATM 11 C C09 XU0 . . . F 4 -2.005 -30.755 -24.764 1 81.26 ? C09 XU0 501 B 1 HETATM 12 C C10 XU0 . . . F 4 -4 -29.755 -26.437 1 80.66 ? C10 XU0 501 B 1 HETATM 13 C C11 XU0 . . . F 4 -3.693 -29.845 -27.802 1 84.79 ? C11 XU0 501 B 1 HETATM 14 N N01 XU0 . . . F 4 0.281 -33.014 -23.141 1 82.94 ? N01 XU0 501 B 1 HETATM 15 N N02 XU0 . . . F 4 2.329 -33.235 -24.207 1 84.62 ? N02 XU0 501 B 1 HETATM 16 N N03 XU0 . . . F 4 0.419 -31.519 -26.479 1 75.32 ? N03 XU0 501 B 1 HETATM 17 N N04 XU0 . . . F 4 2.436 -32.25 -26.418 1 77.45 ? N04 XU0 501 B 1 HETATM 18 N N05 XU0 . . . F 4 -1.61 -31.914 -24.05 1 81.47 ? N05 XU0 501 B 1 HETATM 19 N N06 XU0 . . . F 4 -4.526 -28.962 -28.503 1 85.09 ? N06 XU0 501 B 1 HETATM 20 N N07 XU0 . . . F 4 -4.999 -28.81 -26.309 1 78.14 ? N07 XU0 501 B 1 HETATM 21 S S01 XU0 . . . F 4 -4.683 -31.472 -24.608 1 93.81 ? S01 XU0 501 B 1 HETATM 22 BR BR01 XU0 . . . F 4 -2.348 -30.977 -28.664 1 95.52 ? BR01 XU0 501 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #