data_8FEM # _model_server_result.job_id xXYO2ynUZN88HgP-0UQYag _model_server_result.datetime_utc '2024-11-08 11:58:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fem # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8FEM # _exptl.entry_id 8FEM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FEM _cell.length_a 119.177 _cell.length_b 119.177 _cell.length_c 56.906 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FEM _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 8FEM _atom_sites.fract_transf_matrix[1][1] 0.008391 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008391 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017573 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 401 401 NAP NAP . C 3 HOH A 1 501 32 HOH HOH . C 3 HOH A 2 502 38 HOH HOH . C 3 HOH A 3 503 4 HOH HOH . C 3 HOH A 4 504 5 HOH HOH . C 3 HOH A 5 505 78 HOH HOH . C 3 HOH A 6 506 1 HOH HOH . C 3 HOH A 7 507 9 HOH HOH . C 3 HOH A 8 508 23 HOH HOH . C 3 HOH A 9 509 62 HOH HOH . C 3 HOH A 10 510 19 HOH HOH . C 3 HOH A 11 511 41 HOH HOH . C 3 HOH A 12 512 13 HOH HOH . C 3 HOH A 13 513 18 HOH HOH . C 3 HOH A 14 514 65 HOH HOH . C 3 HOH A 15 515 103 HOH HOH . C 3 HOH A 16 516 57 HOH HOH . C 3 HOH A 17 517 80 HOH HOH . C 3 HOH A 18 518 15 HOH HOH . C 3 HOH A 19 519 16 HOH HOH . C 3 HOH A 20 520 52 HOH HOH . C 3 HOH A 21 521 3 HOH HOH . C 3 HOH A 22 522 26 HOH HOH . C 3 HOH A 23 523 14 HOH HOH . C 3 HOH A 24 524 88 HOH HOH . C 3 HOH A 25 525 21 HOH HOH . C 3 HOH A 26 526 34 HOH HOH . C 3 HOH A 27 527 47 HOH HOH . C 3 HOH A 28 528 7 HOH HOH . C 3 HOH A 29 529 92 HOH HOH . C 3 HOH A 30 530 8 HOH HOH . C 3 HOH A 31 531 54 HOH HOH . C 3 HOH A 32 532 29 HOH HOH . C 3 HOH A 33 533 31 HOH HOH . C 3 HOH A 34 534 2 HOH HOH . C 3 HOH A 35 535 50 HOH HOH . C 3 HOH A 36 536 49 HOH HOH . C 3 HOH A 37 537 82 HOH HOH . C 3 HOH A 38 538 42 HOH HOH . C 3 HOH A 39 539 84 HOH HOH . C 3 HOH A 40 540 12 HOH HOH . C 3 HOH A 41 541 6 HOH HOH . C 3 HOH A 42 542 25 HOH HOH . C 3 HOH A 43 543 71 HOH HOH . C 3 HOH A 44 544 90 HOH HOH . C 3 HOH A 45 545 11 HOH HOH . C 3 HOH A 46 546 27 HOH HOH . C 3 HOH A 47 547 17 HOH HOH . C 3 HOH A 48 548 40 HOH HOH . C 3 HOH A 49 549 44 HOH HOH . C 3 HOH A 50 550 63 HOH HOH . C 3 HOH A 51 551 51 HOH HOH . C 3 HOH A 52 552 46 HOH HOH . C 3 HOH A 53 553 79 HOH HOH . C 3 HOH A 54 554 43 HOH HOH . C 3 HOH A 55 555 74 HOH HOH . C 3 HOH A 56 556 98 HOH HOH . C 3 HOH A 57 557 53 HOH HOH . C 3 HOH A 58 558 20 HOH HOH . C 3 HOH A 59 559 24 HOH HOH . C 3 HOH A 60 560 69 HOH HOH . C 3 HOH A 61 561 45 HOH HOH . C 3 HOH A 62 562 76 HOH HOH . C 3 HOH A 63 563 30 HOH HOH . C 3 HOH A 64 564 59 HOH HOH . C 3 HOH A 65 565 91 HOH HOH . C 3 HOH A 66 566 68 HOH HOH . C 3 HOH A 67 567 55 HOH HOH . C 3 HOH A 68 568 36 HOH HOH . C 3 HOH A 69 569 48 HOH HOH . C 3 HOH A 70 570 95 HOH HOH . C 3 HOH A 71 571 72 HOH HOH . C 3 HOH A 72 572 101 HOH HOH . C 3 HOH A 73 573 89 HOH HOH . C 3 HOH A 74 574 33 HOH HOH . C 3 HOH A 75 575 58 HOH HOH . C 3 HOH A 76 576 85 HOH HOH . C 3 HOH A 77 577 22 HOH HOH . C 3 HOH A 78 578 104 HOH HOH . C 3 HOH A 79 579 67 HOH HOH . C 3 HOH A 80 580 70 HOH HOH . C 3 HOH A 81 581 66 HOH HOH . C 3 HOH A 82 582 56 HOH HOH . C 3 HOH A 83 583 107 HOH HOH . C 3 HOH A 84 584 35 HOH HOH . C 3 HOH A 85 585 93 HOH HOH . C 3 HOH A 86 586 10 HOH HOH . C 3 HOH A 87 587 106 HOH HOH . C 3 HOH A 88 588 94 HOH HOH . C 3 HOH A 89 589 99 HOH HOH . C 3 HOH A 90 590 39 HOH HOH . C 3 HOH A 91 591 108 HOH HOH . C 3 HOH A 92 592 105 HOH HOH . C 3 HOH A 93 593 86 HOH HOH . C 3 HOH A 94 594 61 HOH HOH . C 3 HOH A 95 595 100 HOH HOH . C 3 HOH A 96 596 109 HOH HOH . C 3 HOH A 97 597 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 62.161 23.02 14.889 1 40.55 ? PA NAP 401 A 1 HETATM 2 O O1A NAP . . . B 2 63.233 24.004 14.405 1 40.27 ? O1A NAP 401 A 1 HETATM 3 O O2A NAP . . . B 2 62.413 21.666 14.367 1 55.98 ? O2A NAP 401 A 1 HETATM 4 O O5B NAP . . . B 2 62.185 22.989 16.589 1 41.71 ? O5B NAP 401 A 1 HETATM 5 C C5B NAP . . . B 2 61.323 22.209 17.336 1 43.72 ? C5B NAP 401 A 1 HETATM 6 C C4B NAP . . . B 2 61.972 21.493 18.477 1 46.08 ? C4B NAP 401 A 1 HETATM 7 O O4B NAP . . . B 2 61.255 20.498 18.921 1 46.72 ? O4B NAP 401 A 1 HETATM 8 C C3B NAP . . . B 2 63.433 20.861 18.047 1 47.32 ? C3B NAP 401 A 1 HETATM 9 O O3B NAP . . . B 2 64.513 21.656 18.729 1 48.8 ? O3B NAP 401 A 1 HETATM 10 C C2B NAP . . . B 2 63.456 19.677 18.459 1 47.69 ? C2B NAP 401 A 1 HETATM 11 O O2B NAP . . . B 2 64.811 19.343 19.098 1 53.36 ? O2B NAP 401 A 1 HETATM 12 C C1B NAP . . . B 2 62.294 19.576 19.532 1 44.57 ? C1B NAP 401 A 1 HETATM 13 N N9A NAP . . . B 2 61.839 18.322 19.661 1 46.06 ? N9A NAP 401 A 1 HETATM 14 C C8A NAP . . . B 2 61.31 17.429 18.811 1 46.53 ? C8A NAP 401 A 1 HETATM 15 N N7A NAP . . . B 2 61.027 16.315 19.512 1 48.79 ? N7A NAP 401 A 1 HETATM 16 C C5A NAP . . . B 2 61.372 16.52 20.772 1 45.14 ? C5A NAP 401 A 1 HETATM 17 C C6A NAP . . . B 2 61.309 15.722 21.894 1 50.56 ? C6A NAP 401 A 1 HETATM 18 N N6A NAP . . . B 2 60.804 14.371 21.955 1 50.54 ? N6A NAP 401 A 1 HETATM 19 N N1A NAP . . . B 2 61.725 16.173 23.06 1 46.9 ? N1A NAP 401 A 1 HETATM 20 C C2A NAP . . . B 2 62.233 17.449 23.151 1 46.41 ? C2A NAP 401 A 1 HETATM 21 N N3A NAP . . . B 2 62.304 18.235 22.055 1 46.27 ? N3A NAP 401 A 1 HETATM 22 C C4A NAP . . . B 2 61.878 17.776 20.865 1 42.33 ? C4A NAP 401 A 1 HETATM 23 O O3 NAP . . . B 2 60.764 23.536 14.376 1 45.06 ? O3 NAP 401 A 1 HETATM 24 P PN NAP . . . B 2 60.079 25.064 14.82 1 42.1 ? PN NAP 401 A 1 HETATM 25 O O1N NAP . . . B 2 61.051 25.852 15.621 1 43.92 ? O1N NAP 401 A 1 HETATM 26 O O2N NAP . . . B 2 59.732 25.846 13.599 1 43.01 ? O2N NAP 401 A 1 HETATM 27 O O5D NAP . . . B 2 58.704 24.761 15.709 1 45.42 ? O5D NAP 401 A 1 HETATM 28 C C5D NAP . . . B 2 58.565 25.405 16.899 1 42.81 ? C5D NAP 401 A 1 HETATM 29 C C4D NAP . . . B 2 57.159 25.37 17.448 1 42.33 ? C4D NAP 401 A 1 HETATM 30 O O4D NAP . . . B 2 56.575 26.366 16.803 1 42.19 ? O4D NAP 401 A 1 HETATM 31 C C3D NAP . . . B 2 56.41 24.066 17.065 1 40.34 ? C3D NAP 401 A 1 HETATM 32 O O3D NAP . . . B 2 55.6 23.718 18.054 1 37.6 ? O3D NAP 401 A 1 HETATM 33 C C2D NAP . . . B 2 55.592 24.461 15.804 1 35.84 ? C2D NAP 401 A 1 HETATM 34 O O2D NAP . . . B 2 54.374 23.628 15.737 1 39.94 ? O2D NAP 401 A 1 HETATM 35 C C1D NAP . . . B 2 55.288 25.73 16.022 1 35.35 ? C1D NAP 401 A 1 HETATM 36 N N1N NAP . . . B 2 55.077 26.444 14.819 1 38.33 ? N1N NAP 401 A 1 HETATM 37 C C2N NAP . . . B 2 56.118 26.778 13.997 1 41.23 ? C2N NAP 401 A 1 HETATM 38 C C3N NAP . . . B 2 55.874 27.457 12.814 1 34.35 ? C3N NAP 401 A 1 HETATM 39 C C7N NAP . . . B 2 57.025 27.852 11.863 1 40.96 ? C7N NAP 401 A 1 HETATM 40 O O7N NAP . . . B 2 56.761 28.308 10.827 1 42.13 ? O7N NAP 401 A 1 HETATM 41 N N7N NAP . . . B 2 58.443 27.684 12.26 1 41.49 ? N7N NAP 401 A 1 HETATM 42 C C4N NAP . . . B 2 54.608 27.805 12.488 1 36.67 ? C4N NAP 401 A 1 HETATM 43 C C5N NAP . . . B 2 53.565 27.48 13.331 1 37.21 ? C5N NAP 401 A 1 HETATM 44 C C6N NAP . . . B 2 53.809 26.801 14.49 1 37.87 ? C6N NAP 401 A 1 HETATM 45 P P2B NAP . . . B 2 65.791 18.227 18.314 1 58.01 ? P2B NAP 401 A 1 HETATM 46 O O1X NAP . . . B 2 66.863 18.935 17.519 1 57.3 ? O1X NAP 401 A 1 HETATM 47 O O2X NAP . . . B 2 66.451 17.325 19.381 1 56.93 ? O2X NAP 401 A 1 HETATM 48 O O3X NAP . . . B 2 64.951 17.368 17.377 1 54.37 ? O3X NAP 401 A 1 HETATM 49 H H51A NAP . . . B 2 60.575 22.826 17.719 1 52.47 ? H51A NAP 401 A 1 HETATM 50 H H52A NAP . . . B 2 60.894 21.498 16.704 1 52.47 ? H52A NAP 401 A 1 HETATM 51 H H4B NAP . . . B 2 62.102 22.178 19.263 1 55.3 ? H4B NAP 401 A 1 HETATM 52 H H3B NAP . . . B 2 63.543 20.864 16.937 1 56.79 ? H3B NAP 401 A 1 HETATM 53 H HO3A NAP . . . B 2 64.25 21.83 19.674 1 58.56 ? HO3A NAP 401 A 1 HETATM 54 H H2B NAP . . . B 2 63.26 18.999 17.637 1 57.23 ? H2B NAP 401 A 1 HETATM 55 H H1B NAP . . . B 2 62.591 19.883 20.461 1 53.48 ? H1B NAP 401 A 1 HETATM 56 H H8A NAP . . . B 2 61.15 17.571 17.807 1 55.83 ? H8A NAP 401 A 1 HETATM 57 H H61A NAP . . . B 2 60.876 13.78 21.168 1 60.64 ? H61A NAP 401 A 1 HETATM 58 H H62A NAP . . . B 2 60.357 14.013 22.849 1 60.64 ? H62A NAP 401 A 1 HETATM 59 H H2A NAP . . . B 2 62.59 17.835 24.138 1 55.69 ? H2A NAP 401 A 1 HETATM 60 H H51N NAP . . . B 2 58.843 26.386 16.763 1 51.37 ? H51N NAP 401 A 1 HETATM 61 H H52N NAP . . . B 2 59.196 24.96 17.577 1 51.37 ? H52N NAP 401 A 1 HETATM 62 H H4D NAP . . . B 2 57.098 25.419 18.475 1 50.8 ? H4D NAP 401 A 1 HETATM 63 H H3D NAP . . . B 2 57.07 23.295 16.849 1 48.41 ? H3D NAP 401 A 1 HETATM 64 H HO3N NAP . . . B 2 56.098 23.181 18.688 1 45.12 ? HO3N NAP 401 A 1 HETATM 65 H H2D NAP . . . B 2 56.131 24.359 14.939 1 43.01 ? H2D NAP 401 A 1 HETATM 66 H HO2N NAP . . . B 2 54.586 22.72 15.95 1 47.93 ? HO2N NAP 401 A 1 HETATM 67 H H1D NAP . . . B 2 54.371 25.775 16.653 1 42.42 ? H1D NAP 401 A 1 HETATM 68 H H2N NAP . . . B 2 57.15 26.504 14.276 1 49.48 ? H2N NAP 401 A 1 HETATM 69 H H71N NAP . . . B 2 58.676 27.302 13.184 1 49.79 ? H71N NAP 401 A 1 HETATM 70 H H72N NAP . . . B 2 59.159 27.951 11.646 1 49.79 ? H72N NAP 401 A 1 HETATM 71 H H4N NAP . . . B 2 54.404 28.357 11.53 1 44 ? H4N NAP 401 A 1 HETATM 72 H H5N NAP . . . B 2 52.574 27.757 13.079 1 44.65 ? H5N NAP 401 A 1 HETATM 73 H H6N NAP . . . B 2 53.015 26.555 15.128 1 45.44 ? H6N NAP 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 73 #